Wall clock time and date at job start Mon Mar 30 2020 03:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31473 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48508 * 109.46733 * 239.99909 * 3 2 1 5 5 H 1.48502 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47690 * 119.99795 * 3 2 1 7 7 C 1.38886 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99792 * 195.57509 * 7 2 1 9 9 N 1.37194 * 120.00050 * 15.57506 * 7 2 1 10 10 C 1.46047 * 118.47886 * 21.82535 * 9 7 2 11 11 C 1.53161 * 109.84742 * 160.33032 * 10 9 7 12 12 C 1.53257 * 108.41062 * 47.77112 * 11 10 9 13 13 C 1.52941 * 109.64568 * 178.76292 * 12 11 10 14 14 C 1.53127 * 109.19831 * 183.18660 * 13 12 11 15 15 O 1.42902 * 109.39230 * 57.31016 * 14 13 12 16 16 C 1.42911 * 114.12868 * 298.72114 * 15 14 13 17 17 C 1.52954 * 109.61262 * 58.59284 * 12 11 10 18 18 O 1.45194 * 108.52509 * 298.70287 * 12 11 10 19 19 C 1.33614 * 118.39082 * 201.89694 * 9 7 2 20 20 O 1.21507 * 118.51935 * 2.45272 * 19 9 7 21 21 H 0.96997 * 119.99715 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.39866 * 40.23422 * 10 9 7 23 23 H 1.08996 * 109.39692 * 280.42145 * 10 9 7 24 24 H 1.09000 * 109.68017 * 167.50514 * 11 10 9 25 25 H 1.09006 * 109.67601 * 288.00959 * 11 10 9 26 26 H 1.09001 * 109.51209 * 303.10232 * 13 12 11 27 27 H 1.08995 * 109.51235 * 63.26978 * 13 12 11 28 28 H 1.09002 * 109.48603 * 297.33098 * 14 13 12 29 29 H 1.09005 * 109.49542 * 177.29263 * 14 13 12 30 30 H 1.09000 * 109.48629 * 301.31265 * 16 15 14 31 31 H 1.08996 * 109.50354 * 181.26895 * 16 15 14 32 32 H 1.08993 * 109.51931 * 296.76621 * 17 12 11 33 33 H 1.09010 * 109.51258 * 56.87547 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.1025 1.6962 -1.2126 5 1 1.2838 2.7464 -0.0006 6 1 3.1025 1.6965 1.2124 7 6 2.0091 -1.2028 0.0005 8 1 3.0593 -1.2199 0.2517 9 7 1.3609 -2.3693 -0.3180 10 6 0.1297 -2.2907 -1.0997 11 6 -0.1595 -3.6460 -1.7518 12 6 -0.0101 -4.7375 -0.6864 13 6 -0.3234 -6.1025 -1.3011 14 6 -0.2489 -7.1749 -0.2107 15 8 -1.1571 -6.8451 0.8421 16 6 -0.8759 -5.6016 1.4880 17 6 -0.9765 -4.4646 0.4673 18 8 1.3568 -4.7204 -0.1970 19 6 1.8859 -3.5234 0.1035 20 8 2.8890 -3.4886 0.7884 21 1 -0.4849 0.8400 -0.0004 22 1 0.2407 -1.5324 -1.8747 23 1 -0.6983 -2.0201 -0.4446 24 1 -1.1758 -3.6544 -2.1458 25 1 0.5492 -3.8227 -2.5609 26 1 -1.3257 -6.0875 -1.7293 27 1 0.4037 -6.3257 -2.0818 28 1 0.7656 -7.2209 0.1853 29 1 -0.5184 -8.1429 -0.6334 30 1 0.1308 -5.6280 1.9050 31 1 -1.5968 -5.4363 2.2887 32 1 -0.7147 -3.5211 0.9462 33 1 -1.9951 -4.4078 0.0834 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260519339.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:35 Heat of formation + Delta-G solvation = -137.904924 kcal Electronic energy + Delta-G solvation = -18763.898907 eV Core-core repulsion = 15789.145886 eV Total energy + Delta-G solvation = -2974.753021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.23341 -39.92065 -37.74016 -37.30416 -34.44970 -33.53976 -32.19210 -30.84804 -27.16507 -26.08446 -24.72894 -23.96172 -22.43077 -20.46175 -18.74671 -18.57996 -17.49160 -17.23878 -16.98015 -16.82112 -16.29255 -15.90163 -15.66212 -15.19431 -14.92588 -14.64558 -13.83527 -13.53112 -13.43697 -13.26313 -12.90724 -12.84838 -12.47888 -12.36325 -12.25177 -12.08041 -12.02604 -11.55227 -11.27996 -11.01275 -10.94496 -10.44312 -9.84616 -8.35782 -6.07013 1.38959 1.41325 1.51357 1.85886 2.16023 2.37895 2.86632 2.97805 3.08878 3.52035 3.58221 3.62658 3.94762 4.16279 4.22074 4.27468 4.45186 4.54285 4.63957 4.67335 4.73498 4.83280 4.94551 4.97088 5.03816 5.10702 5.38873 5.42030 5.51560 6.16315 6.21344 6.58085 7.02905 7.48181 7.83715 8.63913 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.042249 B = 0.007817 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.577009 B = 3581.039648 C = 3724.238910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.004 3.996 3 Si 0.994 3.006 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.278 1.278 7 C -0.348 4.348 8 H 0.073 0.927 9 N -0.457 5.457 10 C 0.136 3.864 11 C -0.158 4.158 12 C 0.104 3.896 13 C -0.131 4.131 14 C 0.056 3.944 15 O -0.387 6.387 16 C 0.069 3.931 17 C -0.168 4.168 18 O -0.358 6.358 19 C 0.589 3.411 20 O -0.628 6.628 21 H 0.276 0.724 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.130 0.870 25 H 0.077 0.923 26 H 0.123 0.877 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.130 0.870 30 H 0.027 0.973 31 H 0.114 0.886 32 H 0.053 0.947 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.946 -7.962 -5.444 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.199 4.199 3 Si 0.817 3.183 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.203 1.203 7 C -0.476 4.476 8 H 0.091 0.909 9 N -0.188 5.188 10 C 0.014 3.986 11 C -0.196 4.196 12 C 0.068 3.932 13 C -0.168 4.168 14 C -0.020 4.020 15 O -0.306 6.306 16 C -0.008 4.008 17 C -0.206 4.206 18 O -0.271 6.271 19 C 0.344 3.656 20 O -0.523 6.523 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.148 0.852 25 H 0.096 0.904 26 H 0.141 0.859 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.147 0.853 30 H 0.046 0.954 31 H 0.132 0.868 32 H 0.072 0.928 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.762 -8.200 -5.089 12.385 hybrid contribution 0.903 1.371 0.193 1.653 sum -6.859 -6.829 -4.896 10.847 Atomic orbital electron populations 1.70053 1.06504 1.28841 1.47590 1.26064 0.96515 1.02107 0.95171 0.85000 0.77949 0.76441 0.78959 1.19224 1.19051 1.20312 1.19558 0.94641 0.83928 1.49443 0.90894 1.43117 1.24507 1.03786 1.47377 1.21459 0.86748 0.95660 0.94782 1.22708 1.05827 0.93406 0.97670 1.22529 0.78007 0.98669 0.94028 1.22266 1.05126 0.90473 0.98946 1.22744 0.93025 0.99006 0.87254 1.87861 1.54306 1.38082 1.50342 1.22457 1.00582 0.83034 0.94739 1.22666 1.01315 0.99287 0.97336 1.86520 1.31368 1.28646 1.80603 1.17854 0.85466 0.80210 0.82112 1.90729 1.30012 1.86108 1.45430 0.91404 0.92162 0.90259 0.85180 0.90427 0.85916 0.88692 0.94509 0.85253 0.95446 0.86845 0.92799 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.78 10.57 21.66 0.23 -45.56 16 2 C 0.00 0.20 5.04 84.90 0.43 0.62 16 3 Si 0.99 42.01 29.58 68.60 2.03 44.04 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.35 -20.16 9.11 84.01 0.76 -19.40 16 8 H 0.07 4.54 7.25 -2.91 -0.02 4.52 16 9 N -0.46 -24.38 2.90 -768.38 -2.23 -26.60 16 10 C 0.14 5.90 4.04 86.52 0.35 6.25 16 11 C -0.16 -5.04 5.12 30.73 0.16 -4.88 16 12 C 0.10 3.45 0.69 -10.74 -0.01 3.44 16 13 C -0.13 -3.07 5.17 30.62 0.16 -2.91 16 14 C 0.06 1.38 6.71 72.02 0.48 1.86 16 15 O -0.39 -10.97 10.76 -148.98 -1.60 -12.58 16 16 C 0.07 2.13 6.71 72.02 0.48 2.61 16 17 C -0.17 -5.44 4.49 30.62 0.14 -5.31 16 18 O -0.36 -16.18 9.01 -51.91 -0.47 -16.65 16 19 C 0.59 32.35 7.73 129.97 1.00 33.36 16 20 O -0.63 -40.02 16.55 19.93 0.33 -39.69 16 21 H 0.28 13.20 8.31 -92.71 -0.77 12.43 16 22 H 0.06 2.73 7.54 -2.39 -0.02 2.71 16 23 H 0.08 3.62 5.89 -2.39 -0.01 3.61 16 24 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 25 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 26 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.04 1.07 7.87 -2.39 -0.02 1.05 16 29 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.03 1.01 7.87 -2.39 -0.02 0.99 16 31 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.05 2.17 6.41 -2.39 -0.02 2.16 16 33 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 Total: -1.00 -70.91 263.64 3.36 -67.55 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.11 Total: 13.83 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 3.96 Total: 15.66 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -2.00 Total: -72.16 kcal Atomic # 8 Polarization: -67.18 SS G_CDS: -1.74 Total: -68.92 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -70.91 3.36 -67.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260519339.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.353 kcal (2) G-P(sol) polarization free energy of solvation -70.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds