Wall clock time and date at job start Mon Mar 30 2020 03:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00040 * 2 1 4 4 H 1.48495 * 109.46930 * 239.99807 * 3 2 1 5 5 H 1.48493 * 109.47208 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47024 * 120.00031 * 3 2 1 7 7 C 1.37879 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99942 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47242 * 179.97438 * 9 7 2 11 11 C 1.47226 * 125.57305 * 89.99769 * 10 9 7 12 12 C 1.53621 * 103.57799 * 180.02562 * 11 10 9 13 13 C 1.52621 * 110.28784 * 118.96451 * 12 11 10 14 14 C 1.53199 * 109.19286 * 177.76794 * 13 12 11 15 15 O 1.42908 * 109.34701 * 303.27789 * 14 13 12 16 16 C 1.42921 * 114.21986 * 61.58051 * 15 14 13 17 17 C 1.52630 * 110.28629 * 241.05334 * 12 11 10 18 18 O 1.45206 * 104.49848 * 0.02562 * 12 11 10 19 19 C 1.33944 * 109.26031 * 359.97438 * 18 12 11 20 20 O 1.21512 * 123.09457 * 179.97438 * 19 18 12 21 21 H 0.97004 * 120.00387 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.47294 * 60.00194 * 9 7 2 23 23 H 1.08998 * 109.47569 * 300.00279 * 9 7 2 24 24 H 1.09004 * 110.60586 * 61.50482 * 11 10 9 25 25 H 1.08998 * 110.60624 * 298.54681 * 11 10 9 26 26 H 1.08995 * 109.52164 * 297.68831 * 13 12 11 27 27 H 1.09008 * 109.51815 * 57.85944 * 13 12 11 28 28 H 1.09000 * 109.49646 * 183.31833 * 14 13 12 29 29 H 1.08996 * 109.49135 * 63.24096 * 14 13 12 30 30 H 1.08993 * 109.49549 * 178.45512 * 16 15 14 31 31 H 1.08997 * 109.49231 * 58.37124 * 16 15 14 32 32 H 1.08999 * 109.51793 * 302.13109 * 17 12 11 33 33 H 1.08998 * 109.51985 * 62.25059 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 2.7603 -4.2643 1.1950 12 6 3.6859 -5.3463 0.6185 13 6 5.1257 -5.1026 1.0623 14 6 6.0166 -6.2250 0.5206 15 8 5.5157 -7.4857 0.9701 16 6 4.1926 -7.7850 0.5202 17 6 3.2218 -6.7310 1.0622 18 8 3.5624 -5.2011 -0.8210 19 6 2.7096 -4.2046 -1.0930 20 8 2.4222 -3.8675 -2.2245 21 1 -0.4851 0.8400 0.0004 22 1 0.6239 -2.5567 -0.8904 23 1 0.6245 -2.5571 0.8896 24 1 1.9669 -4.7158 1.7907 25 1 3.3294 -3.5504 1.7905 26 1 5.4696 -4.1444 0.6728 27 1 5.1743 -5.0926 2.1513 28 1 7.0352 -6.0881 0.8834 29 1 6.0117 -6.1992 -0.5691 30 1 3.8993 -8.7702 0.8828 31 1 4.1681 -7.7759 -0.5694 32 1 3.2045 -6.7776 2.1510 33 1 2.2216 -6.9218 0.6735 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260569259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:44 Heat of formation + Delta-G solvation = -120.979066 kcal Electronic energy + Delta-G solvation = -18052.697788 eV Core-core repulsion = 15078.678727 eV Total energy + Delta-G solvation = -2974.019061 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.42046 -38.76025 -36.40992 -34.96474 -33.01719 -32.43927 -31.35846 -28.30673 -26.36890 -23.93080 -23.41052 -22.99375 -21.36026 -19.27196 -16.91372 -16.75820 -16.32955 -16.15279 -15.88793 -15.34986 -14.83408 -14.59476 -14.40141 -13.77653 -13.37992 -13.13414 -12.73429 -12.52195 -12.15303 -12.04215 -11.57267 -11.47834 -11.37733 -11.02783 -10.73694 -10.52236 -10.25071 -10.12910 -9.84676 -9.75725 -9.60777 -8.54634 -7.95359 -6.16201 -4.22414 3.18363 3.26337 3.31089 3.34829 3.49929 3.73380 3.98935 4.35648 4.36042 4.45525 4.53947 4.81013 5.11421 5.17003 5.22918 5.35408 5.43918 5.48101 5.56391 5.57687 5.74623 5.84498 5.92532 5.93909 6.05302 7.05882 7.06145 7.27472 7.37927 7.79885 8.06121 8.21493 8.73795 8.92185 9.43838 10.91772 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.039802 B = 0.006279 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.316805 B = 4458.173983 C = 4645.651961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.273 3.727 10 N -0.608 5.608 11 C 0.078 3.922 12 C 0.093 3.907 13 C -0.153 4.153 14 C 0.063 3.937 15 O -0.384 6.384 16 C 0.063 3.937 17 C -0.152 4.152 18 O -0.334 6.334 19 C 0.632 3.368 20 O -0.528 6.528 21 H 0.266 0.734 22 H 0.047 0.953 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.067 -12.702 6.248 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.077 0.923 9 C 0.156 3.844 10 N -0.354 5.354 11 C -0.046 4.046 12 C 0.055 3.945 13 C -0.191 4.191 14 C -0.014 4.014 15 O -0.303 6.303 16 C -0.014 4.014 17 C -0.190 4.190 18 O -0.246 6.246 19 C 0.385 3.615 20 O -0.413 6.413 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.942 -12.638 5.620 15.949 hybrid contribution 0.158 1.329 -0.003 1.338 sum 8.100 -11.308 5.617 15.001 Atomic orbital electron populations 1.69911 1.06023 1.27494 1.49733 1.24932 0.94934 0.99341 0.94706 0.86490 0.79509 0.82317 0.78752 1.20029 1.21010 1.20149 1.21407 0.93549 0.90530 1.52123 0.92264 1.19220 0.85946 0.80370 0.98863 1.48653 1.47038 1.36171 1.03557 1.22704 0.96992 0.94265 0.90636 1.22642 0.96790 0.96389 0.78716 1.22425 0.93110 1.00999 1.02554 1.22576 0.97134 0.82445 0.99214 1.87889 1.30558 1.36805 1.75046 1.22565 0.81879 0.97733 0.99196 1.22424 1.00841 0.93200 1.02544 1.87194 1.61262 1.51743 1.24364 1.18590 0.78273 0.78430 0.86219 1.90991 1.63287 1.66025 1.21030 0.92394 0.93506 0.94160 0.89795 0.89216 0.89414 0.88797 0.88482 0.92270 0.88530 0.92284 0.88807 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.54 -15.00 9.39 -34.44 -0.32 -15.32 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.27 7.02 5.77 -5.19 -0.03 6.99 16 10 N -0.61 -13.23 2.95 -180.33 -0.53 -13.76 16 11 C 0.08 1.24 6.97 -3.32 -0.02 1.22 16 12 C 0.09 1.31 0.93 -90.68 -0.08 1.22 16 13 C -0.15 -1.81 4.99 -26.82 -0.13 -1.94 16 14 C 0.06 0.70 6.75 37.26 0.25 0.96 16 15 O -0.38 -4.57 10.75 -35.23 -0.38 -4.95 16 16 C 0.06 0.68 6.75 37.26 0.25 0.93 16 17 C -0.15 -1.68 4.99 -26.82 -0.13 -1.82 16 18 O -0.33 -6.22 9.98 -38.27 -0.38 -6.60 16 19 C 0.63 14.48 8.85 53.75 0.48 14.96 16 20 O -0.53 -14.38 17.55 -19.11 -0.34 -14.71 16 21 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.05 1.34 7.93 -51.92 -0.41 0.93 16 23 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.08 1.13 7.71 -51.93 -0.40 0.73 16 25 H 0.09 1.36 7.71 -51.93 -0.40 0.96 16 26 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.72 8.00 -51.93 -0.42 0.31 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.70 8.00 -51.93 -0.42 0.28 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 278.70 15.07 4.20 4.20 Total: -1.00 -32.98 278.70 -6.11 -39.08 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -4.55 Total: -3.41 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 0.15 Total: 8.88 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.20 Total: -38.90 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.10 Total: -26.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.98 -6.11 -39.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.896 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds