Wall clock time and date at job start Mon Mar 30 2020 03:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00040 * 2 1 4 4 H 1.48495 * 109.46930 * 239.99807 * 3 2 1 5 5 H 1.48493 * 109.47208 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47024 * 120.00031 * 3 2 1 7 7 C 1.37879 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99942 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47242 * 179.97438 * 9 7 2 11 11 C 1.47226 * 125.57305 * 89.99769 * 10 9 7 12 12 C 1.53621 * 103.57799 * 180.02562 * 11 10 9 13 13 C 1.52621 * 110.28784 * 118.96451 * 12 11 10 14 14 C 1.53199 * 109.19286 * 177.76794 * 13 12 11 15 15 O 1.42908 * 109.34701 * 303.27789 * 14 13 12 16 16 C 1.42921 * 114.21986 * 61.58051 * 15 14 13 17 17 C 1.52630 * 110.28629 * 241.05334 * 12 11 10 18 18 O 1.45206 * 104.49848 * 0.02562 * 12 11 10 19 19 C 1.33944 * 109.26031 * 359.97438 * 18 12 11 20 20 O 1.21512 * 123.09457 * 179.97438 * 19 18 12 21 21 H 0.97004 * 120.00387 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.47294 * 60.00194 * 9 7 2 23 23 H 1.08998 * 109.47569 * 300.00279 * 9 7 2 24 24 H 1.09004 * 110.60586 * 61.50482 * 11 10 9 25 25 H 1.08998 * 110.60624 * 298.54681 * 11 10 9 26 26 H 1.08995 * 109.52164 * 297.68831 * 13 12 11 27 27 H 1.09008 * 109.51815 * 57.85944 * 13 12 11 28 28 H 1.09000 * 109.49646 * 183.31833 * 14 13 12 29 29 H 1.08996 * 109.49135 * 63.24096 * 14 13 12 30 30 H 1.08993 * 109.49549 * 178.45512 * 16 15 14 31 31 H 1.08997 * 109.49231 * 58.37124 * 16 15 14 32 32 H 1.08999 * 109.51793 * 302.13109 * 17 12 11 33 33 H 1.08998 * 109.51985 * 62.25059 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 2.7603 -4.2643 1.1950 12 6 3.6859 -5.3463 0.6185 13 6 5.1257 -5.1026 1.0623 14 6 6.0166 -6.2250 0.5206 15 8 5.5157 -7.4857 0.9701 16 6 4.1926 -7.7850 0.5202 17 6 3.2218 -6.7310 1.0622 18 8 3.5624 -5.2011 -0.8210 19 6 2.7096 -4.2046 -1.0930 20 8 2.4222 -3.8675 -2.2245 21 1 -0.4851 0.8400 0.0004 22 1 0.6239 -2.5567 -0.8904 23 1 0.6245 -2.5571 0.8896 24 1 1.9669 -4.7158 1.7907 25 1 3.3294 -3.5504 1.7905 26 1 5.4696 -4.1444 0.6728 27 1 5.1743 -5.0926 2.1513 28 1 7.0352 -6.0881 0.8834 29 1 6.0117 -6.1992 -0.5691 30 1 3.8993 -8.7702 0.8828 31 1 4.1681 -7.7759 -0.5694 32 1 3.2045 -6.7776 2.1510 33 1 2.2216 -6.9218 0.6735 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260569259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:43 Heat of formation + Delta-G solvation = -144.223222 kcal Electronic energy + Delta-G solvation = -18053.705730 eV Core-core repulsion = 15078.678727 eV Total energy + Delta-G solvation = -2975.027003 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.87502 -39.92024 -38.04000 -36.73756 -34.76870 -33.94504 -32.23635 -30.11823 -27.85835 -25.39018 -24.82268 -24.20341 -22.81603 -20.69898 -18.85759 -18.19095 -17.78407 -17.60299 -16.98423 -16.79559 -16.30433 -16.08867 -15.67090 -15.09479 -14.85920 -14.77027 -14.09290 -13.81073 -13.60079 -13.30611 -13.07757 -12.94990 -12.80831 -12.63210 -12.34927 -12.26488 -11.84221 -11.68644 -11.40227 -11.36003 -10.69830 -10.57171 -9.75981 -8.29128 -6.44665 1.37013 1.41182 1.47735 1.60298 1.73888 2.34884 2.55422 2.89600 3.01669 3.18775 3.42273 3.48042 3.92957 4.03153 4.26391 4.31145 4.39893 4.45367 4.60429 4.65323 4.75980 4.82142 4.98363 4.98819 4.99527 5.07344 5.26459 5.43848 5.70475 5.93516 6.18953 6.52218 6.61241 7.05370 7.28352 8.78281 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.039802 B = 0.006279 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.316805 B = 4458.173983 C = 4645.651961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.969 3.031 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.557 4.557 8 H 0.054 0.946 9 C 0.287 3.713 10 N -0.613 5.613 11 C 0.074 3.926 12 C 0.086 3.914 13 C -0.151 4.151 14 C 0.063 3.937 15 O -0.389 6.389 16 C 0.061 3.939 17 C -0.148 4.148 18 O -0.333 6.333 19 C 0.630 3.370 20 O -0.586 6.586 21 H 0.271 0.729 22 H 0.005 0.995 23 H 0.044 0.956 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.040 0.960 30 H 0.125 0.875 31 H 0.041 0.959 32 H 0.126 0.874 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.403 -13.172 8.455 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.793 3.207 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.595 4.595 8 H 0.073 0.927 9 C 0.168 3.832 10 N -0.358 5.358 11 C -0.049 4.049 12 C 0.049 3.951 13 C -0.188 4.188 14 C -0.013 4.013 15 O -0.307 6.307 16 C -0.015 4.015 17 C -0.185 4.185 18 O -0.245 6.245 19 C 0.384 3.616 20 O -0.475 6.475 21 H 0.080 0.920 22 H 0.023 0.977 23 H 0.062 0.938 24 H 0.131 0.869 25 H 0.119 0.881 26 H 0.094 0.906 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.059 0.941 30 H 0.143 0.857 31 H 0.059 0.941 32 H 0.144 0.856 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.306 -13.152 7.883 17.937 hybrid contribution -0.248 1.390 -0.646 1.552 sum 9.059 -11.762 7.236 16.516 Atomic orbital electron populations 1.70013 1.07464 1.28651 1.50085 1.25814 0.95826 1.02941 0.93974 0.85444 0.78346 0.77888 0.79027 1.20506 1.20070 1.18282 1.21661 0.93467 0.91773 1.52632 0.92749 1.18756 0.86221 0.81287 0.96944 1.48515 1.46291 1.35342 1.05636 1.23128 0.98200 0.94721 0.88817 1.23197 0.98222 0.97792 0.75868 1.22498 0.91342 1.00662 1.04322 1.22637 0.98342 0.82105 0.98249 1.87895 1.31004 1.36906 1.74924 1.22683 0.81486 0.99049 0.98328 1.22501 1.00701 0.90916 1.04393 1.87190 1.59675 1.49812 1.27794 1.18714 0.78370 0.78864 0.85648 1.90927 1.65361 1.68000 1.23259 0.92024 0.97675 0.93775 0.86892 0.88093 0.90564 0.85723 0.85949 0.94121 0.85692 0.94074 0.85608 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.94 13.29 21.45 0.28 -53.66 16 2 C 0.01 0.82 5.46 84.66 0.46 1.28 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.56 -31.45 9.39 25.60 0.24 -31.21 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.29 15.14 5.77 85.63 0.49 15.63 16 10 N -0.61 -26.87 2.95 -955.96 -2.82 -29.70 16 11 C 0.07 2.18 6.97 86.45 0.60 2.79 16 12 C 0.09 2.25 0.93 -10.83 -0.01 2.24 16 13 C -0.15 -3.15 4.99 30.54 0.15 -3.00 16 14 C 0.06 1.26 6.75 72.05 0.49 1.75 16 15 O -0.39 -8.06 10.75 -148.98 -1.60 -9.67 16 16 C 0.06 1.15 6.75 72.05 0.49 1.63 16 17 C -0.15 -2.80 4.99 30.54 0.15 -2.64 16 18 O -0.33 -12.44 9.98 -48.92 -0.49 -12.93 16 19 C 0.63 29.64 8.85 129.90 1.15 30.79 16 20 O -0.59 -33.47 17.55 19.64 0.34 -33.12 16 21 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 22 H 0.01 0.31 7.93 -2.38 -0.02 0.29 16 23 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.11 2.71 7.71 -2.39 -0.02 2.69 16 25 H 0.10 2.80 7.71 -2.39 -0.02 2.78 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 0.96 8.00 -2.39 -0.02 0.94 16 30 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 0.92 8.00 -2.39 -0.02 0.90 16 32 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -73.35 278.70 3.06 -70.29 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.10 Total: 3.87 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 4.22 Total: 19.25 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.54 Total: -83.35 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -1.75 Total: -55.72 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -73.35 3.06 -70.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.934 kcal (2) G-P(sol) polarization free energy of solvation -73.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds