Wall clock time and date at job start Mon Mar 30 2020 03:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46009 * 118.34314 * 269.73364 * 10 9 7 12 12 C 1.53414 * 109.86548 * 159.65576 * 11 10 9 13 13 C 1.52685 * 108.37213 * 47.25652 * 12 11 10 14 14 C 1.53837 * 110.39297 * 177.67949 * 13 12 11 15 15 C 1.54646 * 103.83035 * 241.01818 * 14 13 12 16 16 O 1.44483 * 104.82793 * 23.84577 * 15 14 13 17 17 C 1.44583 * 105.38890 * 319.92993 * 16 15 14 18 18 O 1.44574 * 109.88698 * 300.02875 * 13 12 11 19 19 C 1.33708 * 118.34019 * 90.00042 * 10 9 7 20 20 O 1.21518 * 118.53491 * 3.00804 * 19 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09000 * 109.38946 * 279.98451 * 11 10 9 25 25 H 1.09003 * 109.38979 * 39.68085 * 11 10 9 26 26 H 1.09009 * 109.82276 * 287.51688 * 12 11 10 27 27 H 1.09003 * 109.73623 * 166.94474 * 12 11 10 28 28 H 1.09007 * 110.54803 * 359.60305 * 14 13 12 29 29 H 1.08999 * 110.55503 * 122.28144 * 14 13 12 30 30 H 1.09000 * 110.36405 * 142.67713 * 15 14 13 31 31 H 1.08993 * 110.36916 * 264.89539 * 15 14 13 32 32 H 1.08998 * 110.40171 * 281.08277 * 17 16 15 33 33 H 1.09002 * 110.39847 * 158.67299 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6488 -4.1435 -1.2845 12 6 3.9653 -4.9101 -1.1034 13 6 3.8176 -5.8433 0.0960 14 6 5.0951 -6.6793 0.2852 15 6 4.6095 -8.1385 0.1222 16 8 3.4029 -8.0407 -0.6666 17 6 2.7084 -6.8770 -0.1628 18 8 3.5304 -5.0736 1.2856 19 6 2.6153 -4.0951 1.1774 20 8 2.1421 -3.6278 2.1943 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 1.8874 -4.8140 -1.6829 25 1 2.8044 -3.3201 -1.9817 26 1 4.7799 -4.2084 -0.9234 27 1 4.1768 -5.4949 -1.9986 28 1 5.8305 -6.4328 -0.4807 29 1 5.5121 -6.5212 1.2797 30 1 5.3588 -8.7312 -0.4026 31 1 4.3935 -8.5775 1.0961 32 1 2.1886 -7.1168 0.7648 33 1 2.0058 -6.5021 -0.9071 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260642811.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:32 Heat of formation + Delta-G solvation = -116.528049 kcal Electronic energy + Delta-G solvation = -18167.144805 eV Core-core repulsion = 15193.318755 eV Total energy + Delta-G solvation = -2973.826050 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.06420 -38.89833 -36.34376 -35.57664 -32.87432 -32.15121 -30.40868 -28.15242 -26.81413 -24.40887 -23.55386 -22.32894 -21.65288 -18.47015 -17.49828 -16.81483 -16.76706 -16.08514 -15.53506 -15.35768 -15.01375 -14.46788 -14.41969 -13.63835 -13.43840 -12.90331 -12.74984 -12.30493 -12.25938 -11.84637 -11.54326 -11.32385 -11.09631 -11.03380 -10.81433 -10.59140 -10.31527 -10.19536 -9.89319 -9.65387 -9.43059 -8.47260 -7.88368 -6.08784 -4.13525 3.04483 3.28007 3.35644 3.38804 3.50367 3.70823 4.06919 4.22524 4.41884 4.45680 4.56034 4.84919 4.94299 5.06611 5.18209 5.26095 5.43136 5.47783 5.50251 5.61522 5.66381 5.72012 6.00245 6.05281 6.38429 6.54543 7.18968 7.32744 7.52236 7.87606 8.16534 8.54330 8.83084 8.97447 9.51565 10.99711 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.046493 B = 0.006211 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.103091 B = 4507.003873 C = 4534.745002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.250 3.750 10 N -0.604 5.604 11 C 0.108 3.892 12 C -0.154 4.154 13 C 0.084 3.916 14 C -0.145 4.145 15 C 0.045 3.955 16 O -0.367 6.367 17 C 0.028 3.972 18 O -0.342 6.342 19 C 0.644 3.356 20 O -0.527 6.527 21 H 0.264 0.736 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 -13.960 -4.583 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.131 3.869 10 N -0.348 5.348 11 C -0.015 4.015 12 C -0.192 4.192 13 C 0.046 3.954 14 C -0.183 4.183 15 C -0.032 4.032 16 O -0.286 6.286 17 C -0.049 4.049 18 O -0.255 6.255 19 C 0.397 3.603 20 O -0.412 6.412 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.477 -13.858 -4.040 16.740 hybrid contribution 0.531 1.194 -0.023 1.307 sum 9.008 -12.664 -4.063 16.063 Atomic orbital electron populations 1.69937 1.05993 1.27036 1.50243 1.24924 0.94893 0.99253 0.94929 0.86419 0.79959 0.83258 0.77643 1.19828 1.20923 1.20781 1.21441 0.93402 0.90583 1.51374 0.92374 1.19384 0.87028 0.81439 0.99012 1.47588 1.47437 1.36827 1.02970 1.21514 0.94139 0.98482 0.87399 1.22448 0.99623 0.98977 0.98172 1.23022 0.95961 0.91555 0.84868 1.22925 0.96114 0.94349 1.04879 1.23475 0.87404 0.95918 0.96371 1.89176 1.34928 1.46463 1.58024 1.23991 0.94738 0.84966 1.01209 1.86631 1.57400 1.45616 1.35837 1.17847 0.78553 0.78914 0.85032 1.90981 1.55157 1.59856 1.35182 0.92666 0.93119 0.94497 0.91919 0.88979 0.89497 0.88245 0.88916 0.88566 0.88529 0.91719 0.90794 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.91 9.38 -34.44 -0.32 -15.23 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.25 6.48 5.03 -5.19 -0.03 6.45 16 10 N -0.60 -12.96 2.81 -181.41 -0.51 -13.47 16 11 C 0.11 1.71 5.97 -4.09 -0.02 1.69 16 12 C -0.15 -1.98 4.91 -26.68 -0.13 -2.11 16 13 C 0.08 1.17 1.07 -89.92 -0.10 1.07 16 14 C -0.15 -1.51 6.54 -25.43 -0.17 -1.67 16 15 C 0.05 0.43 7.65 38.02 0.29 0.72 16 16 O -0.37 -4.51 11.66 -35.23 -0.41 -4.92 16 17 C 0.03 0.37 6.54 37.58 0.25 0.61 16 18 O -0.34 -6.47 9.85 -39.78 -0.39 -6.86 16 19 C 0.64 14.70 8.13 53.58 0.44 15.13 16 20 O -0.53 -14.46 16.40 -19.40 -0.32 -14.78 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.05 1.49 7.17 -51.93 -0.37 1.11 16 23 H 0.04 0.94 8.02 -51.93 -0.42 0.53 16 24 H 0.06 0.86 6.66 -51.93 -0.35 0.51 16 25 H 0.09 1.47 8.11 -51.93 -0.42 1.04 16 26 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 0.78 7.72 -51.93 -0.40 0.38 16 29 H 0.10 1.01 8.00 -51.93 -0.42 0.59 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.11 1.33 6.05 -51.93 -0.31 1.02 16 LS Contribution 274.05 15.07 4.13 4.13 Total: -1.00 -33.51 274.05 -6.02 -39.53 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.34 Total: -3.11 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 0.11 Total: 8.32 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.23 Total: -39.03 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.12 Total: -26.57 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.51 -6.02 -39.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642811.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.996 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds