Wall clock time and date at job start Mon Mar 30 2020 03:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46009 * 118.34314 * 269.73364 * 10 9 7 12 12 C 1.53414 * 109.86548 * 159.65576 * 11 10 9 13 13 C 1.52685 * 108.37213 * 47.25652 * 12 11 10 14 14 C 1.53837 * 110.39297 * 177.67949 * 13 12 11 15 15 C 1.54646 * 103.83035 * 241.01818 * 14 13 12 16 16 O 1.44483 * 104.82793 * 23.84577 * 15 14 13 17 17 C 1.44583 * 105.38890 * 319.92993 * 16 15 14 18 18 O 1.44574 * 109.88698 * 300.02875 * 13 12 11 19 19 C 1.33708 * 118.34019 * 90.00042 * 10 9 7 20 20 O 1.21518 * 118.53491 * 3.00804 * 19 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09000 * 109.38946 * 279.98451 * 11 10 9 25 25 H 1.09003 * 109.38979 * 39.68085 * 11 10 9 26 26 H 1.09009 * 109.82276 * 287.51688 * 12 11 10 27 27 H 1.09003 * 109.73623 * 166.94474 * 12 11 10 28 28 H 1.09007 * 110.54803 * 359.60305 * 14 13 12 29 29 H 1.08999 * 110.55503 * 122.28144 * 14 13 12 30 30 H 1.09000 * 110.36405 * 142.67713 * 15 14 13 31 31 H 1.08993 * 110.36916 * 264.89539 * 15 14 13 32 32 H 1.08998 * 110.40171 * 281.08277 * 17 16 15 33 33 H 1.09002 * 110.39847 * 158.67299 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6488 -4.1435 -1.2845 12 6 3.9653 -4.9101 -1.1034 13 6 3.8176 -5.8433 0.0960 14 6 5.0951 -6.6793 0.2852 15 6 4.6095 -8.1385 0.1222 16 8 3.4029 -8.0407 -0.6666 17 6 2.7084 -6.8770 -0.1628 18 8 3.5304 -5.0736 1.2856 19 6 2.6153 -4.0951 1.1774 20 8 2.1421 -3.6278 2.1943 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 1.8874 -4.8140 -1.6829 25 1 2.8044 -3.3201 -1.9817 26 1 4.7799 -4.2084 -0.9234 27 1 4.1768 -5.4949 -1.9986 28 1 5.8305 -6.4328 -0.4807 29 1 5.5121 -6.5212 1.2797 30 1 5.3588 -8.7312 -0.4026 31 1 4.3935 -8.5775 1.0961 32 1 2.1886 -7.1168 0.7648 33 1 2.0058 -6.5021 -0.9071 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260642811.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:32 Heat of formation + Delta-G solvation = -140.752726 kcal Electronic energy + Delta-G solvation = -18168.195266 eV Core-core repulsion = 15193.318755 eV Total energy + Delta-G solvation = -2974.876511 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.43448 -40.19940 -37.86817 -37.25030 -34.86654 -33.50774 -31.55633 -29.56821 -28.49595 -25.66944 -25.31172 -23.68774 -22.89134 -19.71115 -19.08211 -18.81752 -18.10459 -17.38097 -16.93068 -16.81772 -16.40857 -16.16302 -15.63112 -15.09582 -14.74348 -14.35728 -14.03643 -13.84572 -13.64432 -13.24270 -12.92988 -12.84616 -12.62832 -12.43798 -12.37823 -12.21723 -12.15626 -11.72168 -11.40874 -11.15363 -10.84895 -10.65100 -9.69999 -8.24835 -6.38808 1.37171 1.40002 1.50633 1.56886 1.76554 2.34946 2.43208 2.97331 3.06577 3.21660 3.42919 3.53440 3.80565 4.00315 4.10646 4.22425 4.38135 4.43076 4.55743 4.74011 4.78225 4.84441 4.86391 4.94164 4.99722 5.15886 5.37949 5.50597 5.65144 5.75815 6.01105 6.68196 6.87710 7.14364 7.33201 8.83490 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.046493 B = 0.006211 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.103091 B = 4507.003873 C = 4534.745002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.282 1.282 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.264 3.736 10 N -0.601 5.601 11 C 0.097 3.903 12 C -0.143 4.143 13 C 0.067 3.933 14 C -0.139 4.139 15 C 0.043 3.957 16 O -0.373 6.373 17 C 0.031 3.969 18 O -0.346 6.346 19 C 0.645 3.355 20 O -0.589 6.589 21 H 0.269 0.731 22 H 0.006 0.994 23 H 0.038 0.962 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.895 -14.734 -6.373 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.143 3.857 10 N -0.344 5.344 11 C -0.025 4.025 12 C -0.180 4.180 13 C 0.030 3.970 14 C -0.176 4.176 15 C -0.033 4.033 16 O -0.291 6.291 17 C -0.046 4.046 18 O -0.259 6.259 19 C 0.399 3.601 20 O -0.479 6.479 21 H 0.077 0.923 22 H 0.024 0.976 23 H 0.056 0.944 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.160 0.840 28 H 0.140 0.860 29 H 0.112 0.888 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.615 -14.684 -5.881 19.049 hybrid contribution -0.098 1.306 0.505 1.404 sum 10.517 -13.378 -5.375 17.845 Atomic orbital electron populations 1.70044 1.07499 1.28254 1.50716 1.25819 0.95799 1.02954 0.94266 0.85350 0.78670 0.78621 0.78039 1.19275 1.19172 1.20828 1.21673 0.93232 0.91818 1.51703 0.92935 1.18907 0.87372 0.82586 0.96792 1.47477 1.46488 1.35637 1.04833 1.21911 0.96712 0.99313 0.84554 1.22478 0.97468 0.98706 0.99360 1.23616 0.98160 0.91653 0.83563 1.23019 0.94768 0.93963 1.05852 1.23714 0.87041 0.95731 0.96860 1.89181 1.35881 1.45754 1.58328 1.23869 0.94694 0.85289 1.00739 1.86603 1.55655 1.44759 1.38862 1.17892 0.78537 0.79222 0.84453 1.90922 1.57621 1.62134 1.37199 0.92252 0.97575 0.94381 0.89418 0.88870 0.89629 0.83950 0.86015 0.88795 0.85233 0.91590 0.92370 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 2 C 0.01 0.63 5.46 84.66 0.46 1.09 16 3 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.55 -31.30 9.38 25.60 0.24 -31.06 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.26 14.17 5.03 85.63 0.43 14.60 16 10 N -0.60 -26.17 2.81 -959.56 -2.69 -28.86 16 11 C 0.10 2.90 5.97 86.61 0.52 3.42 16 12 C -0.14 -3.22 4.91 30.63 0.15 -3.07 16 13 C 0.07 1.71 1.07 -10.34 -0.01 1.70 16 14 C -0.14 -2.41 6.54 31.44 0.21 -2.20 16 15 C 0.04 0.66 7.65 72.54 0.55 1.21 16 16 O -0.37 -8.01 11.66 -148.98 -1.74 -9.75 16 17 C 0.03 0.77 6.54 72.26 0.47 1.24 16 18 O -0.35 -13.09 9.85 -53.06 -0.52 -13.61 16 19 C 0.65 30.28 8.13 129.96 1.06 31.33 16 20 O -0.59 -34.09 16.40 19.89 0.33 -33.76 16 21 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 22 H 0.01 0.38 7.17 -2.39 -0.02 0.36 16 23 H 0.04 2.01 8.02 -2.39 -0.02 1.99 16 24 H 0.09 2.21 6.66 -2.39 -0.02 2.20 16 25 H 0.09 2.81 8.11 -2.39 -0.02 2.79 16 26 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.12 1.45 7.72 -2.38 -0.02 1.43 16 29 H 0.09 1.72 8.00 -2.39 -0.02 1.70 16 30 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.60 8.09 -2.39 -0.02 1.58 16 33 H 0.11 2.56 6.05 -2.39 -0.01 2.55 16 Total: -1.00 -75.40 274.05 2.87 -72.53 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.11 Total: 3.64 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 4.08 Total: 18.27 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -2.41 Total: -83.92 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -1.93 Total: -57.12 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -75.40 2.87 -72.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642811.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.220 kcal (2) G-P(sol) polarization free energy of solvation -75.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds