Wall clock time and date at job start Mon Mar 30 2020 03:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.46008 * 118.34153 * 269.73194 * 10 9 7 12 12 C 1.53403 * 109.87128 * 159.69014 * 11 10 9 13 13 C 1.52688 * 108.37537 * 47.23643 * 12 11 10 14 14 C 1.53840 * 110.36763 * 62.32912 * 13 12 11 15 15 C 1.54642 * 103.82693 * 118.61057 * 14 13 12 16 16 O 1.44480 * 104.82386 * 23.88894 * 15 14 13 17 17 C 1.44585 * 105.39448 * 319.92645 * 16 15 14 18 18 O 1.44568 * 109.88550 * 300.03263 * 13 12 11 19 19 C 1.33698 * 118.33819 * 90.00004 * 10 9 7 20 20 O 1.21513 * 118.54169 * 2.98243 * 19 10 9 21 21 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.08997 * 109.38846 * 280.01005 * 11 10 9 25 25 H 1.09010 * 109.38661 * 39.70632 * 11 10 9 26 26 H 1.08998 * 109.81204 * 287.49854 * 12 11 10 27 27 H 1.08997 * 109.57156 * 166.82821 * 12 11 10 28 28 H 1.09007 * 110.55647 * 237.18872 * 14 13 12 29 29 H 1.08999 * 110.55730 * 359.87616 * 14 13 12 30 30 H 1.09008 * 110.37198 * 142.73207 * 15 14 13 31 31 H 1.09008 * 110.36715 * 265.04851 * 15 14 13 32 32 H 1.08997 * 110.39841 * 281.04235 * 17 16 15 33 33 H 1.09001 * 110.39584 * 158.64312 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.2360 -3.2271 1.2860 12 6 4.2426 -4.7504 1.1046 13 6 5.1252 -5.0885 -0.0946 14 6 6.5747 -4.6431 0.1648 15 6 7.3820 -5.9608 0.1085 16 8 6.5775 -6.8532 -0.6939 17 6 5.2121 -6.6124 -0.2838 18 8 4.6023 -4.4550 -1.2842 19 6 4.2118 -3.1734 -1.1758 20 8 4.0437 -2.5299 -2.1927 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8912 23 1 3.8752 -0.6804 -0.8888 24 1 5.1971 -2.9028 1.6850 25 1 3.4447 -2.9507 1.9828 26 1 3.2279 -5.1053 0.9243 27 1 4.6452 -5.2230 2.0005 28 1 6.9089 -3.9560 -0.6127 29 1 6.6625 -4.1795 1.1474 30 1 8.3495 -5.7931 -0.3647 31 1 7.5147 -6.3676 1.1111 32 1 5.0014 -7.1244 0.6550 33 1 4.5193 -6.9390 -1.0594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260642813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:34 Heat of formation + Delta-G solvation = -111.960938 kcal Electronic energy + Delta-G solvation = -18196.287244 eV Core-core repulsion = 15222.659238 eV Total energy + Delta-G solvation = -2973.628005 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10692 -38.94286 -36.38235 -35.70675 -32.91985 -32.16804 -30.19208 -28.96527 -27.17158 -24.00965 -23.16723 -22.86665 -21.53345 -18.36800 -17.58782 -17.06896 -16.74171 -16.26922 -15.81551 -15.44317 -15.09327 -14.62312 -14.20680 -13.77416 -13.20135 -13.13209 -12.77801 -12.52529 -12.33815 -12.00675 -11.63310 -11.34286 -11.23346 -11.12154 -10.87795 -10.53740 -10.41848 -10.16876 -9.97924 -9.64095 -9.44938 -8.62797 -7.95424 -6.12738 -4.12467 3.01101 3.26692 3.32260 3.35094 3.41984 3.68742 3.81685 4.26719 4.35953 4.46265 4.54212 4.78762 4.87504 4.99872 5.18588 5.21350 5.25442 5.39224 5.48074 5.51171 5.55674 5.74965 5.90722 5.98209 6.28881 6.50739 6.75153 7.04308 7.20421 7.54683 8.40780 8.43324 8.83248 8.90637 9.46423 11.00540 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.047391 B = 0.006422 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.686967 B = 4358.638276 C = 4374.541406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.075 0.925 9 C 0.222 3.778 10 N -0.600 5.600 11 C 0.112 3.888 12 C -0.157 4.157 13 C 0.083 3.917 14 C -0.176 4.176 15 C 0.049 3.951 16 O -0.369 6.369 17 C 0.059 3.941 18 O -0.336 6.336 19 C 0.648 3.352 20 O -0.527 6.527 21 H 0.265 0.735 22 H 0.034 0.966 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.339 -10.927 6.710 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.102 3.898 10 N -0.344 5.344 11 C -0.012 4.012 12 C -0.195 4.195 13 C 0.045 3.955 14 C -0.214 4.214 15 C -0.028 4.028 16 O -0.287 6.287 17 C -0.017 4.017 18 O -0.249 6.249 19 C 0.401 3.599 20 O -0.412 6.412 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.189 -10.823 5.827 18.029 hybrid contribution 0.130 1.128 0.396 1.202 sum 13.318 -9.695 6.223 17.610 Atomic orbital electron populations 1.69892 1.06212 1.27093 1.50153 1.24842 0.94778 0.98964 0.94295 0.86845 0.80092 0.83702 0.79012 1.19756 1.20995 1.19061 1.21296 0.89038 0.94954 1.51861 0.90717 1.19725 0.95897 0.76334 0.97879 1.47213 1.66811 1.16974 1.03373 1.21484 1.02024 0.90568 0.87124 1.22442 1.01668 0.97528 0.97879 1.23086 0.93278 0.94335 0.84796 1.23524 0.93982 0.99575 1.04316 1.23426 0.95528 0.88058 0.95805 1.89207 1.16693 1.61173 1.61657 1.23383 0.85360 0.90998 1.01999 1.86662 1.76770 1.25619 1.35822 1.17781 0.77690 0.79644 0.84749 1.90972 1.56698 1.58384 1.35150 0.92460 0.94829 0.93893 0.92002 0.88863 0.89133 0.88362 0.89287 0.88839 0.88689 0.91789 0.89855 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.53 -15.21 9.93 -34.44 -0.34 -15.55 16 8 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.22 5.37 4.10 -5.19 -0.02 5.35 16 10 N -0.60 -12.47 2.81 -181.41 -0.51 -12.98 16 11 C 0.11 1.66 6.00 -4.10 -0.02 1.63 16 12 C -0.16 -1.86 4.86 -26.68 -0.13 -1.99 16 13 C 0.08 1.11 1.07 -89.93 -0.10 1.02 16 14 C -0.18 -1.97 5.88 -25.43 -0.15 -2.12 16 15 C 0.05 0.46 7.65 38.02 0.29 0.75 16 16 O -0.37 -4.63 11.65 -35.23 -0.41 -5.04 16 17 C 0.06 0.67 6.95 37.57 0.26 0.93 16 18 O -0.34 -6.44 9.85 -39.80 -0.39 -6.84 16 19 C 0.65 14.65 8.10 53.57 0.43 15.08 16 20 O -0.53 -14.32 16.40 -19.39 -0.32 -14.64 16 21 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.03 0.75 7.08 -51.93 -0.37 0.39 16 23 H 0.04 1.12 6.60 -51.93 -0.34 0.78 16 24 H 0.06 0.75 7.01 -51.93 -0.36 0.39 16 25 H 0.09 1.42 8.11 -51.92 -0.42 0.99 16 26 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.17 7.97 -51.93 -0.41 0.76 16 29 H 0.09 0.84 6.59 -51.93 -0.34 0.50 16 30 H 0.09 0.80 8.14 -51.92 -0.42 0.37 16 31 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 33 H 0.11 1.26 8.08 -51.93 -0.42 0.84 16 LS Contribution 271.10 15.07 4.09 4.09 Total: -1.00 -35.34 271.10 -5.67 -41.02 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -4.36 Total: -2.72 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 0.12 Total: 7.14 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.26 Total: -39.63 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.12 Total: -26.52 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -35.34 -5.67 -41.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.944 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds