Wall clock time and date at job start Mon Mar 30 2020 03:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.46008 * 118.34153 * 269.73194 * 10 9 7 12 12 C 1.53403 * 109.87128 * 159.69014 * 11 10 9 13 13 C 1.52688 * 108.37537 * 47.23643 * 12 11 10 14 14 C 1.53840 * 110.36763 * 62.32912 * 13 12 11 15 15 C 1.54642 * 103.82693 * 118.61057 * 14 13 12 16 16 O 1.44480 * 104.82386 * 23.88894 * 15 14 13 17 17 C 1.44585 * 105.39448 * 319.92645 * 16 15 14 18 18 O 1.44568 * 109.88550 * 300.03263 * 13 12 11 19 19 C 1.33698 * 118.33819 * 90.00004 * 10 9 7 20 20 O 1.21513 * 118.54169 * 2.98243 * 19 10 9 21 21 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.08997 * 109.38846 * 280.01005 * 11 10 9 25 25 H 1.09010 * 109.38661 * 39.70632 * 11 10 9 26 26 H 1.08998 * 109.81204 * 287.49854 * 12 11 10 27 27 H 1.08997 * 109.57156 * 166.82821 * 12 11 10 28 28 H 1.09007 * 110.55647 * 237.18872 * 14 13 12 29 29 H 1.08999 * 110.55730 * 359.87616 * 14 13 12 30 30 H 1.09008 * 110.37198 * 142.73207 * 15 14 13 31 31 H 1.09008 * 110.36715 * 265.04851 * 15 14 13 32 32 H 1.08997 * 110.39841 * 281.04235 * 17 16 15 33 33 H 1.09001 * 110.39584 * 158.64312 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.2360 -3.2271 1.2860 12 6 4.2426 -4.7504 1.1046 13 6 5.1252 -5.0885 -0.0946 14 6 6.5747 -4.6431 0.1648 15 6 7.3820 -5.9608 0.1085 16 8 6.5775 -6.8532 -0.6939 17 6 5.2121 -6.6124 -0.2838 18 8 4.6023 -4.4550 -1.2842 19 6 4.2118 -3.1734 -1.1758 20 8 4.0437 -2.5299 -2.1927 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8912 23 1 3.8752 -0.6804 -0.8888 24 1 5.1971 -2.9028 1.6850 25 1 3.4447 -2.9507 1.9828 26 1 3.2279 -5.1053 0.9243 27 1 4.6452 -5.2230 2.0005 28 1 6.9089 -3.9560 -0.6127 29 1 6.6625 -4.1795 1.1474 30 1 8.3495 -5.7931 -0.3647 31 1 7.5147 -6.3676 1.1111 32 1 5.0014 -7.1244 0.6550 33 1 4.5193 -6.9390 -1.0594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260642813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:34 Heat of formation + Delta-G solvation = -139.309547 kcal Electronic energy + Delta-G solvation = -18197.473168 eV Core-core repulsion = 15222.659238 eV Total energy + Delta-G solvation = -2974.813930 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.42137 -40.17939 -37.84543 -37.29927 -34.84744 -33.66186 -31.21320 -30.39550 -28.71423 -25.43790 -24.43956 -24.00079 -23.06357 -19.55632 -19.22727 -19.04909 -18.13541 -17.32087 -17.04470 -16.84497 -16.23170 -16.16469 -15.69423 -15.33380 -14.61029 -14.37296 -14.17989 -13.95068 -13.70402 -13.33874 -12.94501 -12.80798 -12.60129 -12.31747 -12.28161 -12.19414 -12.00662 -11.75329 -11.50582 -11.22382 -10.83892 -10.74574 -9.67469 -8.35087 -6.41496 1.33217 1.39361 1.46256 1.58879 1.73352 2.31098 2.46222 2.85900 2.99697 3.26825 3.50300 3.59329 3.87722 4.02715 4.14130 4.26864 4.36202 4.48025 4.64898 4.67023 4.73063 4.76704 4.81149 4.86193 4.91066 5.04155 5.31964 5.40009 5.56068 5.74093 6.19015 6.59413 6.85398 7.10154 7.25046 8.81912 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.047391 B = 0.006422 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.686967 B = 4358.638276 C = 4374.541406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.231 1.231 7 C -0.541 4.541 8 H 0.027 0.973 9 C 0.229 3.771 10 N -0.599 5.599 11 C 0.097 3.903 12 C -0.147 4.147 13 C 0.064 3.936 14 C -0.173 4.173 15 C 0.049 3.951 16 O -0.396 6.396 17 C 0.062 3.938 18 O -0.353 6.353 19 C 0.647 3.353 20 O -0.592 6.592 21 H 0.269 0.731 22 H 0.066 0.934 23 H 0.023 0.977 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.156 0.844 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.863 -11.308 9.429 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.199 1.199 6 H -0.154 1.154 7 C -0.580 4.580 8 H 0.045 0.955 9 C 0.108 3.892 10 N -0.342 5.342 11 C -0.024 4.024 12 C -0.184 4.184 13 C 0.028 3.972 14 C -0.211 4.211 15 C -0.027 4.027 16 O -0.315 6.315 17 C -0.014 4.014 18 O -0.265 6.265 19 C 0.402 3.598 20 O -0.481 6.481 21 H 0.078 0.922 22 H 0.084 0.916 23 H 0.041 0.959 24 H 0.120 0.880 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.174 0.826 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.746 -11.267 8.608 21.189 hybrid contribution -0.678 1.081 -0.433 1.348 sum 15.068 -10.186 8.175 19.940 Atomic orbital electron populations 1.70047 1.08312 1.28473 1.51586 1.25857 0.95687 1.03412 0.93611 0.85710 0.80114 0.78102 0.78992 1.20493 1.19865 1.15365 1.21510 0.91452 0.93297 1.51725 0.95492 1.19460 0.92889 0.78685 0.98175 1.47224 1.65708 1.16115 1.05111 1.21966 1.03895 0.92443 0.84079 1.22503 1.01060 0.95488 0.99397 1.23748 0.94737 0.95411 0.83350 1.23560 0.92325 1.00236 1.04985 1.23651 0.94953 0.86625 0.97429 1.89186 1.17386 1.61835 1.63063 1.23526 0.84849 0.89507 1.03555 1.86618 1.76697 1.23711 1.39522 1.17892 0.77150 0.80366 0.84430 1.90902 1.59341 1.60606 1.37292 0.92157 0.91574 0.95857 0.87979 0.89192 0.90579 0.82642 0.92033 0.85709 0.88003 0.88078 0.85540 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.51 13.96 21.45 0.30 -59.21 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.95 43.64 27.47 68.60 1.88 45.52 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.23 -9.25 6.54 99.48 0.65 -8.60 16 7 C -0.54 -31.74 9.93 25.60 0.25 -31.49 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 9 C 0.23 11.04 4.10 85.63 0.35 11.39 16 10 N -0.60 -24.65 2.81 -959.58 -2.69 -27.35 16 11 C 0.10 2.61 6.00 86.61 0.52 3.13 16 12 C -0.15 -2.96 4.86 30.63 0.15 -2.81 16 13 C 0.06 1.57 1.07 -10.34 -0.01 1.56 16 14 C -0.17 -3.32 5.88 31.44 0.18 -3.14 16 15 C 0.05 0.75 7.65 72.54 0.55 1.31 16 16 O -0.40 -8.93 11.65 -148.98 -1.74 -10.67 16 17 C 0.06 1.23 6.95 72.25 0.50 1.74 16 18 O -0.35 -13.75 9.85 -53.11 -0.52 -14.28 16 19 C 0.65 30.04 8.10 129.96 1.05 31.10 16 20 O -0.59 -33.80 16.40 19.90 0.33 -33.47 16 21 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 22 H 0.07 2.77 7.08 -2.39 -0.02 2.75 16 23 H 0.02 1.22 6.60 -2.39 -0.02 1.21 16 24 H 0.10 1.96 7.01 -2.39 -0.02 1.95 16 25 H 0.09 2.51 8.11 -2.38 -0.02 2.49 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.54 7.97 -2.38 -0.02 1.52 16 29 H 0.12 1.56 6.59 -2.39 -0.02 1.55 16 30 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.13 1.44 7.85 -2.39 -0.02 1.43 16 33 H 0.09 2.10 8.08 -2.39 -0.02 2.08 16 Total: -1.00 -83.39 271.10 2.63 -80.77 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.05 Total: 4.71 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 4.02 Total: 13.98 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -2.39 Total: -86.56 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -1.93 Total: -58.41 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Total: -83.39 2.63 -80.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.544 kcal (2) G-P(sol) polarization free energy of solvation -83.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds