Wall clock time and date at job start Mon Mar 30 2020 03:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36047 * 116.99953 * 2 1 4 4 C 1.38756 * 120.08199 * 270.01881 * 3 2 1 5 5 F 1.35098 * 120.01379 * 0.02562 * 4 3 2 6 6 C 1.38403 * 119.96524 * 179.97438 * 4 3 2 7 7 C 1.38271 * 120.12070 * 359.74272 * 6 4 3 8 8 C 1.38218 * 120.15563 * 0.51351 * 7 6 4 9 9 C 1.50694 * 119.97875 * 179.76558 * 8 7 6 10 10 H 1.09007 * 109.47027 * 219.72273 * 9 8 7 11 11 N 1.46897 * 109.47620 * 339.72231 * 9 8 7 12 12 C 1.50699 * 109.47365 * 99.72433 * 9 8 7 13 13 H 1.08006 * 119.99845 * 335.57714 * 12 9 8 14 14 C 1.37878 * 120.00430 * 155.57389 * 12 9 8 15 15 N 1.31518 * 119.99729 * 7.07009 * 14 12 9 16 16 Si 1.86797 * 120.00319 * 187.06613 * 14 12 9 17 17 H 1.48501 * 109.47403 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47169 * 300.00029 * 16 14 12 19 19 H 1.48505 * 109.47087 * 60.00086 * 16 14 12 20 20 C 1.38625 * 120.03670 * 359.48978 * 8 7 6 21 21 O 1.36002 * 120.05667 * 180.23375 * 20 8 7 22 22 H 1.08993 * 109.47413 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47026 * 300.00112 * 1 2 3 24 24 H 1.08998 * 109.47134 * 59.99753 * 1 2 3 25 25 H 1.08005 * 119.94529 * 180.02562 * 6 4 3 26 26 H 1.07994 * 119.92337 * 180.25641 * 7 6 4 27 27 H 1.00905 * 110.99840 * 66.94527 * 11 9 8 28 28 H 1.00899 * 111.00679 * 190.89995 * 11 9 8 29 29 H 0.97004 * 119.99941 * 355.37474 * 15 14 12 30 30 H 0.96698 * 113.99964 * 90.00372 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 2.3620 1.8321 -1.2007 5 9 2.0555 1.2324 -2.3718 6 6 2.9899 3.0655 -1.1979 7 6 3.2989 3.6841 -0.0004 8 6 2.9917 3.0687 1.1985 9 6 3.3351 3.7441 2.5011 10 1 3.6978 3.0008 3.2112 11 7 4.3793 4.7512 2.2704 12 6 2.1058 4.4139 3.0590 13 1 1.3034 4.7067 2.3981 14 6 2.0053 4.6528 4.4132 15 7 3.0349 4.4250 5.1993 16 14 0.4071 5.3000 5.1315 17 1 0.5576 5.4722 6.5988 18 1 0.0798 6.6089 4.5111 19 1 -0.6866 4.3341 4.8556 20 6 2.3630 1.8333 1.2033 21 8 2.0563 1.2296 2.3828 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 3.2349 3.5479 -2.1326 26 1 3.7851 4.6484 -0.0020 27 1 4.0303 5.5110 1.7055 28 1 4.7526 5.0917 3.1437 29 1 3.8420 4.0262 4.8380 30 1 1.1803 1.4557 2.7242 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260777006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:40 Heat of formation + Delta-G solvation = -125.979942 kcal Electronic energy + Delta-G solvation = -17543.455926 eV Core-core repulsion = 14445.759706 eV Total energy + Delta-G solvation = -3097.696220 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.95462 -41.30257 -38.93417 -37.58275 -36.52887 -33.44971 -30.80731 -30.58120 -27.80313 -27.49274 -24.83177 -23.74046 -22.10306 -19.80754 -19.09687 -18.58129 -18.18006 -17.48562 -17.21071 -16.77785 -16.00273 -15.70459 -15.53006 -15.43100 -15.01807 -14.88280 -14.49867 -14.07194 -13.63663 -13.24506 -12.78952 -12.66131 -12.57488 -12.03677 -11.93334 -11.80725 -11.43527 -10.91072 -10.73622 -9.73515 -9.61168 -9.23992 -8.56574 -6.43247 -0.03067 0.06973 1.53975 1.58042 1.78238 2.27091 2.53920 2.64057 2.88279 3.13374 3.48922 3.80334 3.93586 4.25122 4.30003 4.35106 4.38341 4.50588 4.67009 4.74021 4.92810 5.06599 5.22954 5.50589 5.66670 5.81958 6.06698 6.22038 6.50718 6.52737 6.75655 6.83642 7.38096 8.70776 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027646 B = 0.008208 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.577838 B = 3410.361525 C = 3925.660352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.025 3.975 4 C 0.063 3.937 5 F -0.136 7.136 6 C -0.135 4.135 7 C -0.077 4.077 8 C -0.071 4.071 9 C 0.233 3.767 10 H 0.022 0.978 11 N -0.843 5.843 12 C -0.624 4.624 13 H 0.045 0.955 14 C -0.013 4.013 15 N -0.925 5.925 16 Si 1.110 2.890 17 H -0.290 1.290 18 H -0.274 1.274 19 H -0.269 1.269 20 C 0.100 3.900 21 O -0.491 6.491 22 H 0.121 0.879 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.173 0.827 26 H 0.153 0.847 27 H 0.333 0.667 28 H 0.328 0.672 29 H 0.260 0.740 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 -2.521 -10.649 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C -0.020 4.020 4 C 0.044 3.956 5 F -0.115 7.115 6 C -0.154 4.154 7 C -0.095 4.095 8 C -0.073 4.073 9 C 0.123 3.877 10 H 0.040 0.960 11 N -0.370 5.370 12 C -0.664 4.664 13 H 0.063 0.937 14 C -0.215 4.215 15 N -0.562 5.562 16 Si 0.933 3.067 17 H -0.216 1.216 18 H -0.200 1.200 19 H -0.194 1.194 20 C 0.054 3.946 21 O -0.302 6.302 22 H 0.139 0.861 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.190 0.810 26 H 0.171 0.829 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.071 0.929 30 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -5.003 -3.075 -9.727 11.363 hybrid contribution -0.444 0.168 -0.658 0.811 sum -5.448 -2.907 -10.385 12.082 Atomic orbital electron populations 1.23256 0.77246 1.05122 1.01063 1.86076 1.21874 1.23586 1.94328 1.18985 1.02768 0.89117 0.91113 1.17866 1.04199 0.93588 0.79991 1.91448 1.91471 1.83470 1.45086 1.21343 1.00090 0.93226 1.00736 1.20974 0.97999 1.00919 0.89655 1.20648 0.96668 0.92456 0.97509 1.17778 0.89970 0.90949 0.88964 0.95995 1.59467 1.37545 1.17994 1.21985 1.22602 1.05284 1.43382 0.95116 0.93667 1.27100 1.04728 0.95083 0.94569 1.70946 1.04794 1.40432 1.40012 0.82994 0.71633 0.76782 0.75288 1.21571 1.19986 1.19447 1.18435 1.00217 0.91105 0.84816 1.84740 1.40444 1.69768 1.35290 0.86091 0.93198 0.92994 0.80995 0.82901 0.85571 0.86085 0.92869 0.74544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.13 113.37 1.26 1.93 16 2 O -0.34 -11.90 10.07 -80.18 -0.81 -12.70 16 3 C 0.03 0.94 5.74 22.59 0.13 1.07 16 4 C 0.06 2.11 7.31 22.43 0.16 2.28 16 5 F -0.14 -4.32 17.11 44.97 0.77 -3.55 16 6 C -0.14 -4.03 10.02 22.32 0.22 -3.80 16 7 C -0.08 -2.66 9.27 22.27 0.21 -2.45 16 8 C -0.07 -2.97 5.07 -19.78 -0.10 -3.07 16 9 C 0.23 11.02 2.21 43.42 0.10 11.12 16 10 H 0.02 1.22 6.75 -2.38 -0.02 1.20 16 11 N -0.84 -35.80 8.52 -174.96 -1.49 -37.29 16 12 C -0.62 -31.29 8.51 25.60 0.22 -31.07 16 13 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 14 C -0.01 -0.70 5.45 84.65 0.46 -0.24 16 15 N -0.93 -52.10 13.63 21.45 0.29 -51.80 16 16 Si 1.11 46.13 29.91 68.60 2.05 48.18 16 17 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 20 C 0.10 4.10 6.68 22.56 0.15 4.25 16 21 O -0.49 -20.52 12.52 -79.67 -1.00 -21.52 16 22 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 26 H 0.15 4.76 6.42 -2.91 -0.02 4.74 16 27 H 0.33 12.90 7.63 -89.69 -0.68 12.22 16 28 H 0.33 14.73 8.43 -89.69 -0.76 13.97 16 29 H 0.26 14.93 6.21 -92.71 -0.58 14.36 16 30 H 0.40 14.17 9.06 -74.06 -0.67 13.50 16 Total: -1.00 -61.31 269.28 1.92 -59.39 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -0.71 Total: 39.29 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 2.81 Total: -19.99 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -1.20 Total: -89.09 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.80 Total: -34.22 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.77 Total: -3.55 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.05 Total: 48.18 kcal Total: -61.31 1.92 -59.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260777006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.594 kcal (2) G-P(sol) polarization free energy of solvation -61.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds