Wall clock time and date at job start Mon Mar 30 2020 03:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36034 * 117.00142 * 2 1 4 4 C 1.38636 * 120.00872 * 0.28227 * 3 2 1 5 5 C 1.38169 * 120.02528 * 180.27719 * 4 3 2 6 6 C 1.50691 * 119.97922 * 179.73202 * 5 4 3 7 7 H 1.09006 * 109.47113 * 219.72633 * 6 5 4 8 8 N 1.46897 * 109.47637 * 339.72688 * 6 5 4 9 9 C 1.50699 * 109.47367 * 99.72896 * 6 5 4 10 10 H 1.07994 * 120.00084 * 335.57313 * 9 6 5 11 11 C 1.37878 * 120.00283 * 155.56914 * 9 6 5 12 12 N 1.31513 * 119.99655 * 7.09092 * 11 9 6 13 13 Si 1.86801 * 119.99978 * 187.09051 * 11 9 6 14 14 H 1.48491 * 109.47094 * 269.99876 * 13 11 9 15 15 H 1.48492 * 109.47167 * 30.00380 * 13 11 9 16 16 H 1.48504 * 109.46989 * 150.00219 * 13 11 9 17 17 C 1.38703 * 120.03668 * 359.46268 * 5 4 3 18 18 O 1.35976 * 119.99274 * 180.27538 * 17 5 4 19 19 C 1.38680 * 120.01690 * 0.24268 * 17 5 4 20 20 C 1.38317 * 119.97516 * 0.02984 * 19 17 5 21 21 F 1.35099 * 120.01731 * 179.97438 * 20 19 17 22 22 H 1.09006 * 109.47295 * 60.00560 * 1 2 3 23 23 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47536 * 300.00508 * 1 2 3 25 25 H 1.08000 * 119.98654 * 0.02562 * 4 3 2 26 26 H 1.00905 * 110.99840 * 66.93839 * 8 6 5 27 27 H 1.00899 * 111.00679 * 190.89307 * 8 6 5 28 28 H 0.97001 * 120.00663 * 355.37483 * 12 11 9 29 29 H 0.96701 * 114.00405 * 89.98977 * 18 17 5 30 30 H 1.07997 * 120.01307 * 180.02562 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.2917 2.3749 0.0059 5 6 1.9186 3.6061 0.0001 6 6 1.0971 4.8694 0.0005 7 1 1.5588 5.6033 -0.6602 8 7 -0.2611 4.5705 -0.4728 9 6 1.0304 5.4250 1.3997 10 1 1.1664 4.7703 2.2477 11 6 0.7960 6.7693 1.5973 12 7 0.4925 7.5408 0.5765 13 14 0.9094 7.4945 3.3151 14 1 -0.4199 7.4199 3.9726 15 1 1.8997 6.7270 4.1120 16 1 1.3386 8.9134 3.2260 17 6 3.3037 3.6800 -0.0003 18 8 3.9197 4.8922 -0.0004 19 6 4.0604 2.5179 -0.0001 20 6 3.4334 1.2850 0.0000 21 9 4.1698 0.1523 -0.0003 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.2132 2.3183 0.0109 26 1 -0.7509 3.9806 0.1831 27 1 -0.7769 5.4192 -0.6511 28 1 0.4992 7.1793 -0.3237 29 1 4.0981 5.2429 0.8830 30 1 5.1388 2.5755 0.0000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260856665.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:33 Heat of formation + Delta-G solvation = -128.027424 kcal Electronic energy + Delta-G solvation = -17429.809633 eV Core-core repulsion = 14332.024627 eV Total energy + Delta-G solvation = -3097.785006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.85055 -41.28512 -39.56373 -37.23928 -36.34898 -33.57053 -31.00809 -30.34150 -28.43661 -27.21052 -24.82404 -23.39750 -22.23636 -19.73488 -19.13502 -18.76544 -18.24805 -17.26074 -17.11499 -16.65669 -16.05984 -15.72563 -15.63232 -15.41585 -15.16160 -14.79167 -14.56022 -13.98529 -13.89859 -13.04210 -12.84296 -12.70531 -12.46604 -12.07062 -11.93943 -11.87541 -11.40342 -11.37673 -10.74691 -9.86385 -9.40857 -9.00473 -8.55459 -6.43497 0.10692 0.14924 1.54241 1.59800 1.78161 2.17505 2.40287 2.55799 3.05051 3.12852 3.48150 3.76454 3.82683 4.03766 4.36955 4.39543 4.46216 4.48447 4.69521 4.76246 4.85021 5.07279 5.12121 5.50742 5.59089 5.82402 6.06563 6.22788 6.50411 6.51298 6.79043 6.84037 7.37350 8.70602 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027602 B = 0.007810 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.171181 B = 3584.179214 C = 4023.688148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C 0.084 3.916 4 C -0.159 4.159 5 C -0.046 4.046 6 C 0.232 3.768 7 H 0.027 0.973 8 N -0.843 5.843 9 C -0.623 4.623 10 H 0.043 0.957 11 C -0.012 4.012 12 N -0.925 5.925 13 Si 1.113 2.887 14 H -0.279 1.279 15 H -0.271 1.271 16 H -0.287 1.287 17 C 0.086 3.914 18 O -0.497 6.497 19 C -0.137 4.137 20 C 0.049 3.951 21 F -0.138 7.138 22 H 0.062 0.938 23 H 0.130 0.870 24 H 0.061 0.939 25 H 0.153 0.847 26 H 0.329 0.671 27 H 0.329 0.671 28 H 0.261 0.739 29 H 0.401 0.599 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -10.803 1.462 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.240 6.240 3 C 0.037 3.963 4 C -0.178 4.178 5 C -0.047 4.047 6 C 0.122 3.878 7 H 0.045 0.955 8 N -0.370 5.370 9 C -0.663 4.663 10 H 0.061 0.939 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.936 3.064 14 H -0.205 1.205 15 H -0.196 1.196 16 H -0.212 1.212 17 C 0.040 3.960 18 O -0.309 6.309 19 C -0.156 4.156 20 C 0.029 3.971 21 F -0.117 7.117 22 H 0.081 0.919 23 H 0.148 0.852 24 H 0.080 0.920 25 H 0.171 0.829 26 H 0.141 0.859 27 H 0.140 0.860 28 H 0.072 0.928 29 H 0.258 0.742 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.837 -10.073 1.065 10.295 hybrid contribution -0.175 -0.607 0.304 0.701 sum 1.662 -10.680 1.369 10.895 Atomic orbital electron populations 1.23401 0.76031 1.05903 1.02303 1.86071 1.23803 1.25178 1.88927 1.19017 0.90754 0.85919 1.00563 1.20917 1.01171 0.89636 1.06042 1.20552 0.93720 0.96029 0.94425 1.17824 0.86813 0.89172 0.93967 0.95467 1.59487 1.05071 1.21682 1.50787 1.22586 1.55143 0.95990 0.92582 0.93902 1.27080 0.91866 0.94521 1.07852 1.70913 1.44432 1.40504 1.00264 0.82950 0.77462 0.75349 0.70611 1.20512 1.19620 1.21230 1.17954 0.89431 0.85180 1.03436 1.84708 1.79320 1.32127 1.34726 1.21208 1.01983 0.89097 1.03310 1.16668 0.86027 0.82540 1.11883 1.91442 1.76612 1.48914 1.94736 0.91912 0.85202 0.92018 0.82943 0.85926 0.86026 0.92792 0.74161 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.50 16 2 O -0.33 -10.09 10.36 -93.93 -0.97 -11.06 16 3 C 0.08 2.92 6.69 22.52 0.15 3.07 16 4 C -0.16 -5.85 8.26 22.35 0.18 -5.66 16 5 C -0.05 -1.92 5.08 -19.77 -0.10 -2.02 16 6 C 0.23 10.95 2.21 43.42 0.10 11.04 16 7 H 0.03 1.49 6.75 -2.38 -0.02 1.47 16 8 N -0.84 -35.92 8.52 -174.97 -1.49 -37.41 16 9 C -0.62 -31.33 8.51 25.60 0.22 -31.11 16 10 H 0.04 2.18 7.81 -2.91 -0.02 2.16 16 11 C -0.01 -0.61 5.45 84.66 0.46 -0.14 16 12 N -0.92 -51.61 13.63 21.45 0.29 -51.32 16 13 Si 1.11 46.27 29.91 68.60 2.05 48.32 16 14 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 15 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 16 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 17 C 0.09 3.35 6.67 22.49 0.15 3.50 16 18 O -0.50 -19.40 12.73 -93.28 -1.19 -20.59 16 19 C -0.14 -4.64 9.96 22.39 0.22 -4.42 16 20 C 0.05 1.70 7.31 22.44 0.16 1.86 16 21 F -0.14 -4.68 17.11 44.97 0.77 -3.91 16 22 H 0.06 1.33 7.67 -2.38 -0.02 1.31 16 23 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.06 1.30 7.65 -2.39 -0.02 1.28 16 25 H 0.15 5.14 4.66 -2.91 -0.01 5.13 16 26 H 0.33 12.97 7.63 -89.69 -0.68 12.28 16 27 H 0.33 14.69 8.43 -89.69 -0.76 13.93 16 28 H 0.26 14.81 6.21 -92.71 -0.58 14.24 16 29 H 0.40 13.20 9.06 -74.06 -0.67 12.53 16 30 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -60.47 265.60 1.42 -59.05 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.70 Total: 39.31 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 2.66 Total: -22.38 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -1.20 Total: -88.73 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -2.16 Total: -31.65 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.77 Total: -3.91 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.05 Total: 48.32 kcal Total: -60.47 1.42 -59.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856665.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.978 kcal (2) G-P(sol) polarization free energy of solvation -60.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds