Wall clock time and date at job start Mon Mar 30 2020 04:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 C 1.52998 * 109.46924 * 120.00114 * 2 1 3 5 5 H 1.08999 * 109.53154 * 182.61167 * 4 2 1 6 6 C 1.51192 * 109.52789 * 302.75724 * 4 2 1 7 7 O 1.20832 * 121.43748 * 258.64302 * 6 4 2 8 8 O 1.35264 * 117.12276 * 78.62996 * 6 4 2 9 9 C 1.45471 * 114.66473 * 58.59378 * 8 6 4 10 10 C 1.50208 * 109.96518 * 317.04404 * 9 8 6 11 11 O 1.21279 * 118.38348 * 197.04541 * 10 9 8 12 12 N 1.33702 * 123.24006 * 17.04078 * 10 9 8 13 13 C 1.46506 * 118.62596 * 175.37015 * 12 10 9 14 14 C 1.50694 * 109.47197 * 275.14876 * 13 12 10 15 15 H 1.07997 * 120.00308 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99493 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99594 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00310 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46839 * 89.99907 * 18 16 14 20 20 H 1.48492 * 109.47198 * 210.00199 * 18 16 14 21 21 H 1.48501 * 109.47176 * 330.00322 * 18 16 14 22 22 H 1.09001 * 109.46838 * 60.00085 * 1 2 3 23 23 H 1.09002 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47375 * 300.00157 * 1 2 3 25 25 H 1.08995 * 109.46926 * 239.99683 * 2 1 3 26 26 H 1.09000 * 109.47063 * 183.18187 * 3 2 1 27 27 H 1.09004 * 109.47225 * 303.18531 * 3 2 1 28 28 H 1.08997 * 109.47063 * 63.18082 * 3 2 1 29 29 H 1.09007 * 109.38714 * 77.19135 * 9 8 6 30 30 H 1.08996 * 109.39168 * 196.88747 * 9 8 6 31 31 H 1.09004 * 109.46641 * 35.15026 * 13 12 10 32 32 H 1.09002 * 109.46562 * 155.14452 * 13 12 10 33 33 H 0.97000 * 120.00073 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1290 -0.6815 1.2740 6 6 1.4815 -0.0502 2.4836 7 8 2.1485 0.7113 3.1433 8 8 0.2029 -0.3389 2.8174 9 6 -0.0589 -1.7502 3.0541 10 6 0.6216 -2.5812 2.0041 11 8 0.2640 -3.7308 1.8574 12 7 1.6021 -2.1162 1.2231 13 6 2.2653 -3.0429 0.3024 14 6 3.3657 -3.7719 1.0295 15 1 3.5527 -3.5653 2.0729 16 6 4.1345 -4.7019 0.3622 17 7 5.0952 -5.3377 0.9966 18 14 3.8116 -5.0587 -1.4427 19 1 4.6302 -4.1470 -2.2816 20 1 4.1755 -6.4670 -1.7416 21 1 2.3722 -4.8457 -1.7395 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 3.1286 1.4430 -0.0570 27 1 1.6308 1.9726 -0.8601 28 1 1.7240 1.9395 0.9171 29 1 0.3201 -2.0285 4.0376 30 1 -1.1333 -1.9300 3.0178 31 1 1.5390 -3.7634 -0.0737 32 1 2.6891 -2.4846 -0.5324 33 1 5.6358 -5.9922 0.5274 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261057222.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:39 Heat of formation + Delta-G solvation = -129.030461 kcal Electronic energy + Delta-G solvation = -18482.618392 eV Core-core repulsion = 15508.250197 eV Total energy + Delta-G solvation = -2974.368195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.62085 -40.31939 -38.22548 -37.92119 -35.53647 -34.36244 -30.91893 -29.75634 -28.23072 -27.62883 -25.18099 -23.28088 -21.75989 -20.12021 -19.31504 -19.19343 -18.28170 -17.67323 -16.99554 -16.62701 -16.21818 -15.73654 -15.43301 -15.28353 -14.80827 -14.56986 -14.16137 -14.07825 -13.74555 -13.51862 -13.11808 -13.02455 -12.57949 -12.51232 -12.31804 -12.00290 -11.95432 -11.89550 -11.77000 -11.52623 -10.83370 -10.69362 -9.73833 -8.35534 -6.42516 0.27051 1.33702 1.36462 1.38190 1.48079 1.64823 2.02655 2.30713 2.73128 2.99369 3.28057 3.58370 3.81201 4.02640 4.07398 4.23442 4.32319 4.51173 4.68707 4.76681 4.88845 4.93137 4.94895 5.10518 5.17149 5.30756 5.36002 5.39917 5.46232 5.92165 6.15359 6.33786 6.58782 6.95041 7.21958 8.81340 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.009027 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.949159 B = 3101.223857 C = 3387.014497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.144 4.144 4 C 0.105 3.895 5 H 0.112 0.888 6 C 0.502 3.498 7 O -0.455 6.455 8 O -0.364 6.364 9 C 0.077 3.923 10 C 0.471 3.529 11 O -0.567 6.567 12 N -0.583 5.583 13 C 0.223 3.777 14 C -0.542 4.542 15 H 0.026 0.974 16 C 0.013 3.987 17 N -0.944 5.944 18 Si 0.948 3.052 19 H -0.251 1.251 20 H -0.284 1.284 21 H -0.248 1.248 22 H 0.083 0.917 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.124 0.876 30 H 0.182 0.818 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 12.833 -3.497 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.202 4.202 4 C 0.000 4.000 5 H 0.130 0.870 6 C 0.341 3.659 7 O -0.334 6.334 8 O -0.284 6.284 9 C 0.002 3.998 10 C 0.259 3.741 11 O -0.447 6.447 12 N -0.315 5.315 13 C 0.102 3.898 14 C -0.580 4.580 15 H 0.044 0.956 16 C -0.185 4.185 17 N -0.584 5.584 18 Si 0.770 3.230 19 H -0.175 1.175 20 H -0.210 1.210 21 H -0.172 1.172 22 H 0.102 0.898 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.141 0.859 30 H 0.199 0.801 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.313 12.646 -3.213 16.631 hybrid contribution 0.644 -0.889 -0.269 1.131 sum -9.669 11.757 -3.481 15.615 Atomic orbital electron populations 1.21943 0.93219 1.01887 1.03619 1.21542 0.97957 0.97252 0.95294 1.21840 1.01963 0.93367 1.03002 1.22118 1.01794 0.80938 0.95146 0.87013 1.23198 0.79573 0.79374 0.83724 1.90640 1.55836 1.34066 1.52826 1.86740 1.26995 1.27805 1.86898 1.23735 1.05605 0.73197 0.97283 1.21227 0.80535 0.88894 0.83475 1.90750 1.64680 1.19834 1.69467 1.47615 1.34539 1.09130 1.40199 1.19469 0.91816 0.89117 0.89388 1.21469 1.15966 1.23206 0.97408 0.95597 1.25855 0.94049 0.94694 1.03921 1.70051 1.21727 1.27263 1.39311 0.85712 0.80287 0.78288 0.78737 1.17490 1.20970 1.17155 0.89812 0.93791 0.91591 0.88504 0.91714 0.89258 0.93311 0.85851 0.80127 0.94678 0.92494 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.32 71.98 0.60 -2.66 16 2 C -0.10 -2.45 2.78 -10.79 -0.03 -2.48 16 3 C -0.14 -2.87 9.04 71.98 0.65 -2.22 16 4 C 0.11 3.34 2.51 44.45 0.11 3.45 16 5 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 6 C 0.50 15.55 5.22 71.39 0.37 15.92 16 7 O -0.46 -15.90 17.69 21.80 0.39 -15.52 16 8 O -0.36 -9.74 8.69 -62.02 -0.54 -10.28 16 9 C 0.08 1.96 7.19 71.08 0.51 2.47 16 10 C 0.47 17.60 6.79 87.67 0.60 18.20 16 11 O -0.57 -26.03 16.35 -3.03 -0.05 -26.08 16 12 N -0.58 -22.42 1.99 -808.32 -1.61 -24.02 16 13 C 0.22 10.16 3.97 85.63 0.34 10.50 16 14 C -0.54 -30.78 9.88 25.60 0.25 -30.53 16 15 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 16 C 0.01 0.76 5.47 84.66 0.46 1.22 16 17 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 18 Si 0.95 42.32 27.47 68.60 1.88 44.20 16 19 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.25 -10.39 6.54 99.48 0.65 -9.74 16 22 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.10 7.15 -2.39 -0.02 1.08 16 24 H 0.07 1.43 6.05 -2.39 -0.01 1.41 16 25 H 0.10 2.33 7.29 -2.39 -0.02 2.31 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.05 1.05 7.00 -2.39 -0.02 1.04 16 29 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 30 H 0.18 3.20 8.14 -2.39 -0.02 3.19 16 31 H 0.04 1.71 6.39 -2.39 -0.02 1.69 16 32 H 0.06 2.30 6.57 -2.39 -0.02 2.29 16 33 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -72.64 273.72 5.30 -67.35 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.06 Total: 8.72 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 3.87 Total: 13.87 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -1.31 Total: -82.25 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.20 Total: -51.88 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Total: -72.64 5.30 -67.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057222.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.685 kcal (2) G-P(sol) polarization free energy of solvation -72.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds