Wall clock time and date at job start Mon Mar 30 2020 03:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35988 * 117.00302 * 2 1 4 4 C 1.38566 * 120.06169 * 359.97438 * 3 2 1 5 5 C 1.38421 * 119.98181 * 179.77134 * 4 3 2 6 6 F 1.35096 * 119.95625 * 180.27220 * 5 4 3 7 7 C 1.38447 * 120.09131 * 0.52243 * 5 4 3 8 8 C 1.50700 * 119.94062 * 179.72440 * 7 5 4 9 9 H 1.09004 * 109.47210 * 324.72957 * 8 7 5 10 10 N 1.46899 * 109.47483 * 204.72626 * 8 7 5 11 11 C 1.50702 * 109.46869 * 84.72664 * 8 7 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.38251 * 120.12186 * 359.45523 * 7 5 4 20 20 C 1.38538 * 120.02200 * 0.29291 * 19 7 5 21 21 O 1.36040 * 120.04967 * 180.02562 * 20 19 7 22 22 H 1.09000 * 109.47638 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.47080 * 300.00173 * 1 2 3 24 24 H 1.09000 * 109.47616 * 59.99552 * 1 2 3 25 25 H 1.08007 * 120.01130 * 359.97438 * 4 3 2 26 26 H 1.00902 * 111.00292 * 176.04974 * 10 8 7 27 27 H 1.00903 * 111.00048 * 300.00270 * 10 8 7 28 28 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 29 29 H 1.08008 * 119.98786 * 180.27461 * 19 7 5 30 30 H 0.96698 * 113.99791 * 89.99455 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2930 2.3746 -0.0005 5 6 1.9232 3.6070 0.0042 6 9 1.1882 4.7405 0.0093 7 6 3.3057 3.6797 -0.0013 8 6 3.9883 5.0233 -0.0024 9 1 3.4024 5.7280 -0.5925 10 7 5.3292 4.8910 -0.5874 11 6 4.1052 5.5284 1.4126 12 1 3.7238 4.9356 2.2309 13 6 4.7047 6.7445 1.6632 14 7 5.1694 7.4662 0.6669 15 14 4.8564 7.3670 3.4179 16 1 4.2600 6.3753 4.3483 17 1 6.2904 7.5592 3.7526 18 1 4.1401 8.6614 3.5477 19 6 4.0614 2.5220 -0.0004 20 6 3.4358 1.2859 0.0001 21 8 4.1788 0.1464 0.0016 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 0.2143 2.3195 -0.0014 26 1 5.7830 5.7894 -0.6586 27 1 5.8924 4.2424 -0.0579 28 1 5.5909 8.3220 0.8432 29 1 5.1398 2.5812 -0.0003 30 1 4.3929 -0.1823 0.8854 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261071032.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:42 Heat of formation + Delta-G solvation = -101.934350 kcal Electronic energy + Delta-G solvation = -17288.623725 eV Core-core repulsion = 14191.970200 eV Total energy + Delta-G solvation = -3096.653525 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.19403 -40.00483 -37.65133 -36.41685 -34.23306 -31.53467 -29.30873 -28.95230 -27.27878 -25.76675 -23.01351 -22.13922 -20.28767 -18.30043 -17.52706 -16.80268 -16.58448 -15.77183 -15.59310 -14.91277 -14.74751 -14.45379 -14.30173 -13.95339 -13.27251 -12.91924 -12.83529 -12.45794 -11.87586 -11.51696 -11.33153 -11.16597 -10.95386 -10.85055 -10.48721 -10.42765 -9.94734 -9.68613 -8.72021 -8.35067 -7.59466 -7.23351 -6.13909 -4.30868 1.51439 1.76053 3.18799 3.27632 3.31934 3.37154 3.93329 4.30885 4.52059 4.79828 5.04327 5.09705 5.16297 5.17447 5.44218 5.54127 5.65856 5.97568 6.20100 6.36475 6.50068 6.79769 6.85193 7.12250 7.42010 7.56081 7.69132 7.99423 8.03487 8.59509 8.84990 9.03804 9.40624 10.84074 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031163 B = 0.007085 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.300026 B = 3951.038084 C = 4212.453303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.102 3.898 4 C -0.236 4.236 5 C 0.127 3.873 6 F -0.131 7.131 7 C -0.079 4.079 8 C 0.244 3.756 9 H 0.054 0.946 10 N -0.849 5.849 11 C -0.543 4.543 12 H 0.056 0.944 13 C 0.067 3.933 14 N -0.892 5.892 15 Si 0.899 3.101 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.070 4.070 20 C 0.058 3.942 21 O -0.487 6.487 22 H 0.096 0.904 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.135 0.865 26 H 0.358 0.642 27 H 0.311 0.689 28 H 0.266 0.734 29 H 0.145 0.855 30 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 -11.201 0.416 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.056 3.944 4 C -0.256 4.256 5 C 0.107 3.893 6 F -0.109 7.109 7 C -0.080 4.080 8 C 0.134 3.866 9 H 0.072 0.928 10 N -0.380 5.380 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.135 4.135 14 N -0.531 5.531 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.089 4.089 20 C 0.012 3.988 21 O -0.295 6.295 22 H 0.115 0.885 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.153 0.847 26 H 0.175 0.825 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.163 0.837 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.092 -11.375 -0.910 12.935 hybrid contribution -0.056 1.132 2.458 2.707 sum -6.148 -10.243 1.548 12.046 Atomic orbital electron populations 1.23027 0.79098 1.03476 1.01352 1.86114 1.20741 1.26219 1.89208 1.18931 0.91363 0.83963 1.00114 1.20896 1.00352 0.90972 1.13346 1.17230 0.89005 0.81276 1.01807 1.91482 1.76753 1.49164 1.93512 1.20436 0.91125 0.98568 0.97914 1.17874 0.88341 0.86282 0.94061 0.92803 1.59550 1.05603 1.17179 1.55631 1.21781 1.39305 1.04322 0.92900 0.92545 1.25011 0.94875 0.96057 0.97607 1.69746 1.39318 1.13327 1.30679 0.86430 0.77776 0.78853 0.84324 1.19734 1.20856 1.20761 1.20959 1.01140 0.89059 0.97765 1.17738 0.85833 0.86589 1.08605 1.84892 1.71976 1.39806 1.32820 0.88522 0.92806 0.92775 0.84685 0.82478 0.87867 0.92390 0.83703 0.76617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.65 10.28 -34.25 -0.35 -5.00 16 3 C 0.10 1.73 6.70 -39.13 -0.26 1.47 16 4 C -0.24 -4.07 9.01 -39.39 -0.36 -4.43 16 5 C 0.13 2.61 7.24 -39.44 -0.29 2.32 16 6 F -0.13 -2.84 16.56 2.25 0.04 -2.80 16 7 C -0.08 -1.72 5.00 -104.54 -0.52 -2.24 16 8 C 0.24 6.11 2.72 -70.02 -0.19 5.92 16 9 H 0.05 1.51 7.79 -51.93 -0.40 1.10 16 10 N -0.85 -19.93 8.78 -6.65 -0.06 -19.98 16 11 C -0.54 -14.53 8.71 -34.44 -0.30 -14.83 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.07 1.80 5.38 -17.82 -0.10 1.70 16 14 N -0.89 -24.40 11.53 55.43 0.64 -23.76 16 15 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.07 -1.36 9.20 -39.47 -0.36 -1.73 16 20 C 0.06 1.02 6.72 -39.14 -0.26 0.76 16 21 O -0.49 -7.59 13.29 -34.41 -0.46 -8.05 16 22 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.52 7.66 -51.92 -0.40 0.12 16 24 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 25 H 0.14 1.94 6.30 -52.48 -0.33 1.61 16 26 H 0.36 9.01 7.07 -39.29 -0.28 8.73 16 27 H 0.31 6.80 7.20 -39.29 -0.28 6.52 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.15 2.68 6.28 -52.48 -0.33 2.35 16 30 H 0.38 4.11 9.06 45.56 0.41 4.52 16 LS Contribution 265.00 15.07 3.99 3.99 Total: -1.00 -29.72 265.00 -4.84 -34.56 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -1.97 Total: 15.04 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.65 Total: -9.80 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.58 Total: -43.74 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.81 Total: -13.05 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.72 -4.84 -34.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071032.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.374 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds