Wall clock time and date at job start Mon Mar 30 2020 03:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35988 * 117.00302 * 2 1 4 4 C 1.38566 * 120.06169 * 359.97438 * 3 2 1 5 5 C 1.38421 * 119.98181 * 179.77134 * 4 3 2 6 6 F 1.35096 * 119.95625 * 180.27220 * 5 4 3 7 7 C 1.38447 * 120.09131 * 0.52243 * 5 4 3 8 8 C 1.50700 * 119.94062 * 179.72440 * 7 5 4 9 9 H 1.09004 * 109.47210 * 324.72957 * 8 7 5 10 10 N 1.46899 * 109.47483 * 204.72626 * 8 7 5 11 11 C 1.50702 * 109.46869 * 84.72664 * 8 7 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.38251 * 120.12186 * 359.45523 * 7 5 4 20 20 C 1.38538 * 120.02200 * 0.29291 * 19 7 5 21 21 O 1.36040 * 120.04967 * 180.02562 * 20 19 7 22 22 H 1.09000 * 109.47638 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.47080 * 300.00173 * 1 2 3 24 24 H 1.09000 * 109.47616 * 59.99552 * 1 2 3 25 25 H 1.08007 * 120.01130 * 359.97438 * 4 3 2 26 26 H 1.00902 * 111.00292 * 176.04974 * 10 8 7 27 27 H 1.00903 * 111.00048 * 300.00270 * 10 8 7 28 28 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 29 29 H 1.08008 * 119.98786 * 180.27461 * 19 7 5 30 30 H 0.96698 * 113.99791 * 89.99455 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2930 2.3746 -0.0005 5 6 1.9232 3.6070 0.0042 6 9 1.1882 4.7405 0.0093 7 6 3.3057 3.6797 -0.0013 8 6 3.9883 5.0233 -0.0024 9 1 3.4024 5.7280 -0.5925 10 7 5.3292 4.8910 -0.5874 11 6 4.1052 5.5284 1.4126 12 1 3.7238 4.9356 2.2309 13 6 4.7047 6.7445 1.6632 14 7 5.1694 7.4662 0.6669 15 14 4.8564 7.3670 3.4179 16 1 4.2600 6.3753 4.3483 17 1 6.2904 7.5592 3.7526 18 1 4.1401 8.6614 3.5477 19 6 4.0614 2.5220 -0.0004 20 6 3.4358 1.2859 0.0001 21 8 4.1788 0.1464 0.0016 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 0.2143 2.3195 -0.0014 26 1 5.7830 5.7894 -0.6586 27 1 5.8924 4.2424 -0.0579 28 1 5.5909 8.3220 0.8432 29 1 5.1398 2.5812 -0.0003 30 1 4.3929 -0.1823 0.8854 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261071032.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:41 Heat of formation + Delta-G solvation = -124.416824 kcal Electronic energy + Delta-G solvation = -17289.598638 eV Core-core repulsion = 14191.970200 eV Total energy + Delta-G solvation = -3097.628438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.80981 -41.32166 -38.94026 -37.88436 -35.98245 -33.44079 -30.79260 -30.37528 -28.56423 -27.53489 -24.65856 -23.56730 -21.91060 -19.60879 -18.95686 -18.59425 -18.22723 -17.20389 -16.98557 -16.52195 -16.23873 -16.03113 -15.59357 -15.42582 -14.79633 -14.75852 -14.31517 -14.14155 -13.30327 -13.05297 -12.86294 -12.77930 -12.54599 -12.45754 -12.08310 -12.01854 -11.59539 -11.36480 -10.74869 -9.79033 -9.31630 -8.94748 -8.14216 -6.41261 0.06870 0.30640 1.35474 1.38458 1.49487 2.24869 2.32758 2.53069 3.02244 3.21570 3.36310 3.77328 3.97399 4.13757 4.40388 4.40764 4.51328 4.68551 4.74173 4.79354 4.97863 5.15326 5.24565 5.60859 5.61333 5.71437 5.98963 6.24274 6.59597 6.85625 6.89559 7.07582 7.34688 8.80237 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031163 B = 0.007085 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.300026 B = 3951.038084 C = 4212.453303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.315 6.315 3 C 0.112 3.888 4 C -0.222 4.222 5 C 0.102 3.898 6 F -0.146 7.146 7 C -0.108 4.108 8 C 0.250 3.750 9 H 0.011 0.989 10 N -0.840 5.840 11 C -0.558 4.558 12 H 0.048 0.952 13 C 0.022 3.978 14 N -0.915 5.915 15 Si 0.961 3.039 16 H -0.271 1.271 17 H -0.274 1.274 18 H -0.281 1.281 19 C -0.074 4.074 20 C 0.066 3.934 21 O -0.489 6.489 22 H 0.127 0.873 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.166 0.834 26 H 0.348 0.652 27 H 0.321 0.679 28 H 0.269 0.731 29 H 0.147 0.853 30 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.535 -13.135 1.278 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.229 6.229 3 C 0.066 3.934 4 C -0.242 4.242 5 C 0.083 3.917 6 F -0.124 7.124 7 C -0.110 4.110 8 C 0.140 3.860 9 H 0.028 0.972 10 N -0.370 5.370 11 C -0.597 4.597 12 H 0.066 0.934 13 C -0.178 4.178 14 N -0.555 5.555 15 Si 0.787 3.213 16 H -0.196 1.196 17 H -0.199 1.199 18 H -0.206 1.206 19 C -0.093 4.093 20 C 0.020 3.980 21 O -0.301 6.301 22 H 0.145 0.855 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.184 0.816 26 H 0.163 0.837 27 H 0.132 0.868 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.815 -13.345 -0.036 14.985 hybrid contribution 0.107 1.565 2.157 2.667 sum -6.708 -11.781 2.120 13.721 Atomic orbital electron populations 1.23436 0.76452 1.05961 1.02307 1.86127 1.23388 1.24754 1.88585 1.18963 0.91302 0.84706 0.98423 1.21080 1.01887 0.89519 1.11672 1.17495 0.88768 0.82040 1.03436 1.91435 1.76923 1.50217 1.93869 1.20219 0.91987 0.97707 1.01103 1.17584 0.88446 0.87525 0.92482 0.97155 1.59495 1.05262 1.16612 1.55623 1.21981 1.39448 1.04719 0.93593 0.93418 1.25757 0.94548 0.96192 1.01301 1.69846 1.39648 1.13588 1.32375 0.85459 0.78015 0.78024 0.79834 1.19595 1.19904 1.20647 1.20930 1.01131 0.89164 0.98099 1.17674 0.86478 0.86504 1.07340 1.84829 1.71646 1.38672 1.34933 0.85453 0.91693 0.91908 0.81647 0.83708 0.86791 0.92170 0.83528 0.73863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.31 -8.34 10.28 -79.51 -0.82 -9.15 16 3 C 0.11 3.54 6.70 22.56 0.15 3.69 16 4 C -0.22 -7.24 9.01 22.39 0.20 -7.04 16 5 C 0.10 4.23 7.24 22.36 0.16 4.39 16 6 F -0.15 -6.50 16.56 44.97 0.74 -5.75 16 7 C -0.11 -4.82 5.00 -19.81 -0.10 -4.92 16 8 C 0.25 12.95 2.72 43.42 0.12 13.07 16 9 H 0.01 0.62 7.79 -2.38 -0.02 0.61 16 10 N -0.84 -40.54 8.78 -174.95 -1.54 -42.08 16 11 C -0.56 -30.55 8.71 25.60 0.22 -30.32 16 12 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 13 C 0.02 1.21 5.38 84.66 0.46 1.67 16 14 N -0.92 -51.02 11.53 21.45 0.25 -50.78 16 15 Si 0.96 42.92 29.54 68.60 2.03 44.94 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 C -0.07 -2.85 9.20 22.34 0.21 -2.64 16 20 C 0.07 2.20 6.72 22.56 0.15 2.35 16 21 O -0.49 -13.93 13.29 -80.10 -1.06 -14.99 16 22 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 0.99 7.66 -2.38 -0.02 0.97 16 24 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 25 H 0.17 4.25 6.30 -2.91 -0.02 4.23 16 26 H 0.35 18.04 7.07 -89.69 -0.63 17.40 16 27 H 0.32 14.26 7.20 -89.69 -0.65 13.61 16 28 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 29 H 0.15 5.40 6.28 -2.91 -0.02 5.38 16 30 H 0.40 7.47 9.06 -74.06 -0.67 6.80 16 Total: -1.00 -64.45 265.00 1.55 -62.90 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -0.73 Total: 33.35 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 2.68 Total: -18.43 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -1.29 Total: -92.86 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -1.88 Total: -24.15 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.74 Total: -5.75 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -64.45 1.55 -62.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071032.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.517 kcal (2) G-P(sol) polarization free energy of solvation -64.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds