Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35989 * 116.99915 * 2 1 4 4 C 1.38561 * 120.05972 * 0.02562 * 3 2 1 5 5 C 1.38423 * 119.97516 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.95720 * 179.97438 * 5 4 3 7 7 C 1.38452 * 120.09723 * 359.97298 * 5 4 3 8 8 C 1.50703 * 119.94255 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47145 * 40.00213 * 8 7 5 10 10 N 1.46900 * 109.47047 * 160.00437 * 8 7 5 11 11 C 1.50700 * 109.47148 * 280.00191 * 8 7 5 12 12 H 1.08002 * 119.99770 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00083 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47228 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46793 * 300.00001 * 15 13 11 18 18 H 1.48500 * 109.47000 * 60.00094 * 15 13 11 19 19 C 1.38251 * 120.12035 * 0.28228 * 7 5 4 20 20 C 1.38546 * 120.02096 * 359.48508 * 19 7 5 21 21 O 1.36037 * 120.04613 * 180.25623 * 20 19 7 22 22 H 1.09002 * 109.47339 * 299.99923 * 1 2 3 23 23 H 1.08999 * 109.47690 * 59.99921 * 1 2 3 24 24 H 1.09008 * 109.47427 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.01390 * 359.94948 * 4 3 2 26 26 H 1.00907 * 110.99867 * 296.04432 * 10 8 7 27 27 H 1.00896 * 111.00376 * 59.99771 * 10 8 7 28 28 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 29 29 H 1.08003 * 119.99082 * 179.74145 * 19 7 5 30 30 H 0.96696 * 114.00021 * 270.23128 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2928 2.3745 0.0005 5 6 1.9231 3.6070 0.0011 6 9 1.1881 4.7405 0.0011 7 6 3.3057 3.6797 0.0016 8 6 3.9882 5.0234 0.0016 9 1 3.4506 5.7040 0.6618 10 7 5.3701 4.8706 0.4758 11 6 3.9963 5.5827 -1.3977 12 1 3.5513 5.0215 -2.2061 13 6 4.5708 6.8112 -1.6458 14 7 5.1122 7.4948 -0.6613 15 14 4.5802 7.5049 -3.3802 16 1 5.2517 8.8293 -3.3800 17 1 5.3127 6.5781 -4.2800 18 1 3.1830 7.6590 -3.8592 19 6 4.0613 2.5221 -0.0042 20 6 3.4357 1.2859 0.0001 21 8 4.1788 0.1464 -0.0004 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2142 2.3194 0.0001 26 1 5.3908 4.5579 1.4350 27 1 5.8897 4.2438 -0.1201 28 1 5.1070 7.1347 0.2395 29 1 5.1397 2.5813 -0.0080 30 1 4.3937 -0.1826 -0.8839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261071033.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -123.748126 kcal Electronic energy + Delta-G solvation = -17339.172948 eV Core-core repulsion = 14241.573506 eV Total energy + Delta-G solvation = -3097.599441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.90442 -41.45904 -39.11091 -38.07192 -36.06680 -33.46850 -30.84903 -30.49147 -28.60219 -27.21832 -24.61148 -23.64098 -22.19308 -19.74641 -19.21712 -18.70369 -18.29840 -17.22359 -17.01124 -16.36377 -16.29132 -16.21482 -15.66501 -15.54852 -15.23924 -15.05178 -14.33560 -13.98605 -13.74335 -13.03234 -12.79055 -12.64484 -12.54528 -12.39004 -11.97090 -11.89547 -11.65010 -10.79984 -10.50175 -9.93159 -9.45159 -9.05026 -8.39747 -6.27131 -0.07163 0.15158 1.55226 1.62942 1.82075 2.14950 2.32480 2.64296 3.09735 3.24448 3.29755 3.62704 3.89463 4.02522 4.11998 4.32546 4.34141 4.44643 4.62724 4.67612 4.87063 4.95058 5.04319 5.31306 5.51615 5.88468 6.13579 6.17134 6.60622 6.74396 6.77755 6.98937 7.63741 8.95813 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031057 B = 0.007169 C = 0.006661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.352860 B = 3904.963123 C = 4202.511943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.314 6.314 3 C 0.115 3.885 4 C -0.221 4.221 5 C 0.108 3.892 6 F -0.145 7.145 7 C -0.146 4.146 8 C 0.250 3.750 9 H 0.006 0.994 10 N -0.834 5.834 11 C -0.615 4.615 12 H 0.036 0.964 13 C -0.010 4.010 14 N -0.916 5.916 15 Si 1.109 2.891 16 H -0.284 1.284 17 H -0.272 1.272 18 H -0.278 1.278 19 C -0.091 4.091 20 C 0.070 3.930 21 O -0.489 6.489 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.129 0.871 25 H 0.166 0.834 26 H 0.321 0.679 27 H 0.334 0.666 28 H 0.278 0.722 29 H 0.147 0.853 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 -15.399 -0.106 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.227 6.227 3 C 0.069 3.931 4 C -0.241 4.241 5 C 0.088 3.912 6 F -0.123 7.123 7 C -0.149 4.149 8 C 0.140 3.860 9 H 0.024 0.976 10 N -0.363 5.363 11 C -0.653 4.653 12 H 0.054 0.946 13 C -0.213 4.213 14 N -0.551 5.551 15 Si 0.932 3.068 16 H -0.210 1.210 17 H -0.197 1.197 18 H -0.204 1.204 19 C -0.110 4.110 20 C 0.025 3.975 21 O -0.300 6.300 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.147 0.853 25 H 0.184 0.816 26 H 0.133 0.867 27 H 0.149 0.851 28 H 0.089 0.911 29 H 0.164 0.836 30 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -6.910 -13.426 -0.508 15.108 hybrid contribution -1.066 -1.714 0.717 2.141 sum -7.975 -15.139 0.209 17.113 Atomic orbital electron populations 1.23458 0.76288 1.06108 1.02346 1.86136 1.23516 1.24624 1.88441 1.18983 0.91340 0.84756 0.98059 1.21153 1.02031 0.89613 1.11269 1.17521 0.88929 0.82009 1.02782 1.91449 1.76900 1.50224 1.93747 1.21163 0.92839 0.99065 1.01859 1.17841 0.85432 0.87169 0.95575 0.97623 1.59120 1.14865 1.57203 1.05159 1.21891 1.43648 1.06702 0.93072 0.94605 1.26980 0.92204 0.94265 1.07886 1.70672 1.40853 1.40664 1.02954 0.83052 0.76977 0.75860 0.70915 1.20955 1.19694 1.20411 1.20955 1.00977 0.89460 0.99599 1.17619 0.86499 0.86473 1.06938 1.84823 1.71544 1.38597 1.35072 0.91821 0.91693 0.85303 0.81611 0.86713 0.85099 0.91071 0.83595 0.73681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.31 16 2 O -0.31 -7.97 10.28 -79.52 -0.82 -8.78 16 3 C 0.12 3.48 6.70 22.56 0.15 3.63 16 4 C -0.22 -7.01 9.01 22.39 0.20 -6.80 16 5 C 0.11 4.34 7.23 22.36 0.16 4.51 16 6 F -0.14 -6.42 16.65 44.97 0.75 -5.67 16 7 C -0.15 -6.22 5.02 -19.81 -0.10 -6.32 16 8 C 0.25 12.65 2.18 43.42 0.09 12.75 16 9 H 0.01 0.35 7.80 -2.39 -0.02 0.33 16 10 N -0.83 -38.12 7.28 -174.95 -1.27 -39.39 16 11 C -0.61 -34.79 8.70 25.60 0.22 -34.57 16 12 H 0.04 2.04 7.74 -2.91 -0.02 2.02 16 13 C -0.01 -0.55 5.39 84.65 0.46 -0.09 16 14 N -0.92 -56.40 13.51 21.45 0.29 -56.11 16 15 Si 1.11 51.03 29.90 68.60 2.05 53.09 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.09 -3.27 9.18 22.35 0.21 -3.07 16 20 C 0.07 2.23 6.72 22.56 0.15 2.39 16 21 O -0.49 -13.12 13.29 -80.07 -1.06 -14.19 16 22 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 23 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 24 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.17 4.15 6.30 -2.91 -0.02 4.13 16 26 H 0.32 12.86 9.06 -89.69 -0.81 12.05 16 27 H 0.33 14.32 7.27 -89.70 -0.65 13.67 16 28 H 0.28 17.30 6.39 -92.70 -0.59 16.70 16 29 H 0.15 4.90 6.24 -2.91 -0.02 4.88 16 30 H 0.41 7.02 9.06 -74.06 -0.67 6.35 16 Total: -1.00 -70.61 265.50 1.85 -68.76 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.74 Total: 28.56 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 2.66 Total: -26.27 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -0.98 Total: -95.50 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.88 Total: -22.97 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.75 Total: -5.67 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.09 kcal Total: -70.61 1.85 -68.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071033.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.989 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds