Wall clock time and date at job start Mon Mar 30 2020 03:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47171 * 2 1 4 4 C 1.50700 * 109.47498 * 119.99963 * 2 1 3 5 5 H 1.08005 * 120.00241 * 120.00112 * 4 2 1 6 6 C 1.37878 * 119.99823 * 300.00437 * 4 2 1 7 7 N 1.31516 * 119.99700 * 180.27190 * 6 4 2 8 8 Si 1.86798 * 120.00144 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.46979 * 89.99888 * 8 6 4 10 10 H 1.48499 * 109.47052 * 210.00437 * 8 6 4 11 11 H 1.48504 * 109.46915 * 330.00409 * 8 6 4 12 12 N 1.46906 * 109.47274 * 240.00159 * 2 1 3 13 13 C 1.48557 * 110.99977 * 60.69849 * 12 2 1 14 14 C 1.54382 * 104.59615 * 159.04062 * 13 12 2 15 15 F 1.39892 * 110.32556 * 217.25092 * 14 13 12 16 16 F 1.39902 * 110.32328 * 95.04112 * 14 13 12 17 17 C 1.54260 * 105.05752 * 336.14728 * 14 13 12 18 18 F 1.39901 * 110.32322 * 241.10233 * 17 14 13 19 19 F 1.39902 * 110.32066 * 118.89470 * 17 14 13 20 20 C 1.48556 * 111.00071 * 176.11779 * 12 2 1 21 21 H 1.08996 * 109.47171 * 294.62504 * 1 2 3 22 22 H 1.08999 * 109.47362 * 54.62901 * 1 2 3 23 23 H 1.09010 * 109.47006 * 174.62191 * 1 2 3 24 24 H 0.96998 * 119.99966 * 179.71891 * 7 6 4 25 25 H 1.09001 * 110.41427 * 277.82156 * 13 12 2 26 26 H 1.08999 * 110.41381 * 40.26010 * 13 12 2 27 27 H 1.09006 * 110.41354 * 319.73483 * 20 12 2 28 28 H 1.09002 * 110.41409 * 82.05825 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1421 -0.8562 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8743 2.6993 10 1 0.9771 1.9953 3.9070 11 1 0.8489 2.1772 1.4922 12 7 2.0197 -0.6925 -1.1995 13 6 1.5572 -0.0091 -2.4348 14 6 2.5404 -0.4768 -3.5294 15 9 2.8150 0.5704 -4.4154 16 9 2.0130 -1.5733 -4.2200 17 6 3.8196 -0.8862 -2.7707 18 9 4.9002 -0.0969 -3.1789 19 9 4.0981 -2.2406 -2.9834 20 6 3.5017 -0.6315 -1.2817 21 1 -0.3633 0.4282 0.9342 22 1 -0.3634 0.5949 -0.8380 23 1 -0.3633 -1.0232 -0.0963 24 1 1.9112 -0.5225 4.4375 25 1 0.5405 -0.3155 -2.6809 26 1 1.6101 1.0728 -2.3134 27 1 3.8590 0.3531 -0.9797 28 1 3.9492 -1.4052 -0.6578 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306152398.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:52 Heat of formation + Delta-G solvation = -197.343455 kcal Electronic energy + Delta-G solvation = -18515.299063 eV Core-core repulsion = 14872.651548 eV Total energy + Delta-G solvation = -3642.647514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.078 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.90338 -49.68339 -48.91084 -48.01239 -39.73038 -35.40839 -33.23257 -30.09348 -29.39085 -26.98062 -24.45707 -22.74689 -21.81167 -19.70755 -19.34314 -18.83942 -18.00564 -17.80780 -17.36740 -16.73736 -16.15415 -15.60500 -15.58883 -15.20901 -15.07826 -14.81125 -14.71404 -14.65042 -14.58873 -14.34298 -14.02738 -13.43791 -13.14613 -13.05568 -12.58535 -12.50569 -12.12623 -11.75352 -11.45526 -11.19460 -10.74717 -9.63244 -8.28791 -6.34968 1.34669 1.38770 1.48871 1.50292 2.21423 2.31929 2.32496 2.43795 2.68303 3.05393 3.17639 3.46217 3.59987 4.18071 4.25501 4.39297 4.46895 4.55025 4.61813 4.72736 4.91098 5.20767 5.53974 5.69465 5.76716 6.40878 6.72254 7.30041 8.87260 Molecular weight = 241.08amu Principal moments of inertia in cm(-1) A = 0.037080 B = 0.008133 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.947056 B = 3442.069712 C = 3713.208513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.177 3.823 3 H 0.019 0.981 4 C -0.515 4.515 5 H 0.042 0.958 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.947 3.053 9 H -0.265 1.265 10 H -0.303 1.303 11 H -0.240 1.240 12 N -0.496 5.496 13 C -0.003 4.003 14 C 0.261 3.739 15 F -0.173 7.173 16 F -0.173 7.173 17 C 0.252 3.748 18 F -0.176 7.176 19 F -0.177 7.177 20 C 0.016 3.984 21 H 0.040 0.960 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.267 0.733 25 H 0.139 0.861 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.369 4.897 -13.130 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.070 3.930 3 H 0.036 0.964 4 C -0.554 4.554 5 H 0.061 0.939 6 C -0.182 4.182 7 N -0.584 5.584 8 Si 0.774 3.226 9 H -0.191 1.191 10 H -0.231 1.231 11 H -0.164 1.164 12 N -0.221 5.221 13 C -0.131 4.131 14 C 0.222 3.778 15 F -0.154 7.154 16 F -0.153 7.153 17 C 0.214 3.786 18 F -0.156 7.156 19 F -0.157 7.157 20 C -0.113 4.113 21 H 0.059 0.941 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.157 0.843 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.540 4.327 -12.965 13.754 hybrid contribution 0.319 0.874 0.340 0.990 sum -1.221 5.201 -12.624 13.708 Atomic orbital electron populations 1.22141 0.95691 1.02342 1.00406 1.19867 0.93698 0.92492 0.86959 0.96383 1.21081 1.31666 1.12831 0.89788 0.93937 1.25773 0.97224 0.99957 0.95259 1.70026 1.47282 1.42426 0.98698 0.85889 0.79233 0.79841 0.77667 1.19071 1.23089 1.16383 1.65536 1.04396 1.50236 1.01977 1.24309 1.00008 1.01030 0.87799 1.22501 0.93475 0.76216 0.85562 1.93078 1.94357 1.57036 1.70892 1.93080 1.87065 1.54066 1.81131 1.22678 0.83916 0.74431 0.97569 1.93068 1.57267 1.73464 1.91834 1.93070 1.94197 1.32535 1.95926 1.23913 0.92281 1.05556 0.89547 0.94128 0.90946 0.92032 0.92423 0.84333 0.87801 0.88827 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 8.43 71.98 0.61 -4.69 15 2 C 0.18 7.15 1.42 44.17 0.06 7.21 15 3 H 0.02 0.73 7.03 -2.39 -0.02 0.71 15 4 C -0.52 -26.81 8.73 25.60 0.22 -26.58 15 5 H 0.04 2.50 7.44 -2.91 -0.02 2.48 15 6 C 0.02 0.86 5.45 84.65 0.46 1.32 15 7 N -0.94 -56.11 13.96 21.45 0.30 -55.81 15 8 Si 0.95 40.84 24.41 68.60 1.67 42.51 15 9 H -0.26 -10.88 6.83 99.48 0.68 -10.20 15 10 H -0.30 -13.38 7.11 99.48 0.71 -12.67 15 11 H -0.24 -9.19 6.53 99.48 0.65 -8.54 15 12 N -0.50 -17.64 5.19 -860.72 -4.47 -22.11 15 13 C 0.00 -0.08 4.98 86.45 0.43 0.35 15 14 C 0.26 7.42 2.70 31.49 0.09 7.51 15 15 F -0.17 -4.71 16.48 44.97 0.74 -3.97 15 16 F -0.17 -5.20 16.48 44.97 0.74 -4.46 15 17 C 0.25 7.89 2.70 31.49 0.09 7.97 15 18 F -0.18 -5.35 16.48 44.97 0.74 -4.61 15 19 F -0.18 -5.98 16.48 44.97 0.74 -5.24 15 20 C 0.02 0.54 5.38 86.45 0.47 1.01 15 21 H 0.04 1.54 3.22 -2.39 -0.01 1.53 15 22 H 0.07 1.98 7.25 -2.39 -0.02 1.96 15 23 H 0.06 2.24 8.14 -2.38 -0.02 2.22 15 24 H 0.27 14.91 8.31 -92.71 -0.77 14.14 15 25 H 0.14 3.19 7.77 -2.39 -0.02 3.18 15 26 H 0.10 2.40 7.94 -2.39 -0.02 2.38 15 27 H 0.09 3.00 7.89 -2.38 -0.02 2.98 15 28 H 0.11 4.05 7.58 -2.39 -0.02 4.04 15 Total: -1.00 -59.39 242.31 4.00 -55.39 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.11 Total: 4.20 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 2.42 Total: -5.91 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -4.17 Total: -77.92 kcal Atomic # 9 Polarization: -21.25 SS G_CDS: 2.96 Total: -18.28 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.67 Total: 42.51 kcal Total: -59.39 4.00 -55.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306152398.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.953 kcal (2) G-P(sol) polarization free energy of solvation -59.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds