Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.50698 * 109.47395 * 240.00137 * 2 1 3 5 5 H 1.07999 * 120.00165 * 240.00313 * 4 2 1 6 6 C 1.37873 * 120.00194 * 59.99957 * 4 2 1 7 7 N 1.31512 * 119.99839 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47130 * 89.99894 * 8 6 4 10 10 H 1.48495 * 109.47075 * 209.99589 * 8 6 4 11 11 H 1.48496 * 109.47207 * 330.00095 * 8 6 4 12 12 N 1.46906 * 109.47112 * 119.99911 * 2 1 3 13 13 C 1.48564 * 110.99968 * 179.58323 * 12 2 1 14 14 C 1.54378 * 104.59302 * 159.04118 * 13 12 2 15 15 F 1.39893 * 110.32124 * 217.24834 * 14 13 12 16 16 F 1.39900 * 110.40841 * 95.08825 * 14 13 12 17 17 C 1.54253 * 105.06189 * 336.14918 * 14 13 12 18 18 F 1.39904 * 110.32488 * 241.10477 * 17 14 13 19 19 F 1.39900 * 110.32892 * 118.89670 * 17 14 13 20 20 C 1.48558 * 111.00058 * 295.00191 * 12 2 1 21 21 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 23 23 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 24 24 H 0.97003 * 120.00488 * 179.97438 * 7 6 4 25 25 H 1.09001 * 110.40725 * 277.82096 * 13 12 2 26 26 H 1.08996 * 110.40901 * 40.26087 * 13 12 2 27 27 H 1.09000 * 110.41168 * 319.73843 * 20 12 2 28 28 H 1.09000 * 110.41060 * 82.17881 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 7 2.0196 -0.6925 1.1995 13 6 3.5047 -0.7211 1.2288 14 6 3.8600 -0.9592 2.7121 15 9 5.0006 -0.2286 3.0619 16 9 4.0646 -2.3223 2.9520 17 6 2.6362 -0.4538 3.5036 18 9 3.0058 0.5954 4.3520 19 9 2.0684 -1.4988 4.2403 20 6 1.6445 0.0474 2.4319 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7088 1.1613 -3.4844 25 1 3.8814 -1.5369 0.6118 26 1 3.9100 0.2320 0.8891 27 1 1.7587 1.1208 2.2805 28 1 0.6206 -0.1898 2.7208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306152401.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = -203.559351 kcal Electronic energy + Delta-G solvation = -18463.243943 eV Core-core repulsion = 14820.326887 eV Total energy + Delta-G solvation = -3642.917056 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.078 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.89949 -49.68018 -48.90224 -48.00460 -39.58989 -35.43648 -32.61466 -30.06429 -28.97285 -27.09427 -24.37594 -22.76003 -21.80613 -19.67316 -19.36413 -18.44233 -17.97797 -17.75581 -17.16963 -16.76637 -16.03687 -15.58937 -15.56366 -15.16358 -15.04804 -14.81712 -14.75312 -14.70731 -14.33163 -14.07180 -13.45419 -13.24842 -13.08510 -12.85367 -12.59398 -12.31595 -12.15988 -12.05597 -11.65326 -11.01155 -10.55848 -9.55329 -8.14910 -6.27118 1.45006 1.47686 1.51415 1.55837 2.24321 2.34205 2.44810 2.47514 2.69408 3.15419 3.27816 3.47886 3.61307 4.26755 4.31562 4.43163 4.53571 4.77952 4.94862 5.00005 5.30053 5.43457 5.65458 5.95116 6.15828 6.33452 6.82489 7.42628 8.90855 Molecular weight = 241.08amu Principal moments of inertia in cm(-1) A = 0.035762 B = 0.007813 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.761314 B = 3583.030914 C = 3933.848370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.209 3.791 3 H -0.008 1.008 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.957 3.043 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.500 5.500 13 C 0.017 3.983 14 C 0.254 3.746 15 F -0.176 7.176 16 F -0.174 7.174 17 C 0.259 3.741 18 F -0.175 7.175 19 F -0.172 7.172 20 C 0.000 4.000 21 H 0.034 0.966 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.264 0.736 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -0.981 8.923 9.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.010 0.990 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 N -0.226 5.226 13 C -0.111 4.111 14 C 0.216 3.784 15 F -0.157 7.157 16 F -0.155 7.155 17 C 0.221 3.779 18 F -0.156 7.156 19 F -0.153 7.153 20 C -0.129 4.129 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.136 0.864 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.785 -1.411 8.815 9.351 hybrid contribution 0.695 0.413 -0.589 1.000 sum 3.480 -0.999 8.226 8.988 Atomic orbital electron populations 1.21668 0.96254 0.99900 1.00563 1.19390 0.93556 0.91161 0.85632 0.99023 1.21327 1.31894 1.12732 0.90593 0.91983 1.25598 0.95142 0.95569 1.01691 1.69976 1.37217 1.23816 1.24350 0.85563 0.78900 0.78211 0.79016 1.20411 1.21118 1.19233 1.65721 1.06095 1.48155 1.02584 1.23919 0.92063 1.05715 0.89447 1.22662 0.82818 0.74938 0.97996 1.93062 1.52562 1.76716 1.93377 1.93065 1.95276 1.31615 1.95529 1.22528 0.92884 0.77114 0.85340 1.93072 1.92195 1.57158 1.73156 1.93072 1.85513 1.57866 1.78861 1.24199 1.00043 0.99705 0.88972 0.94640 0.94408 0.91556 0.92713 0.86438 0.89526 0.89038 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.94 71.98 0.64 -4.85 15 2 C 0.21 9.41 1.83 44.17 0.08 9.49 15 3 H -0.01 -0.38 7.97 -2.39 -0.02 -0.40 15 4 C -0.53 -26.40 8.09 25.60 0.21 -26.19 15 5 H 0.06 3.08 6.93 -2.91 -0.02 3.06 15 6 C 0.02 1.02 5.30 84.65 0.45 1.47 15 7 N -0.91 -48.80 11.32 21.45 0.24 -48.56 15 8 Si 0.96 41.00 29.54 68.60 2.03 43.02 15 9 H -0.28 -11.83 7.11 99.48 0.71 -11.12 15 10 H -0.29 -12.11 7.11 99.48 0.71 -11.40 15 11 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 12 N -0.50 -19.05 5.19 -860.72 -4.47 -23.52 15 13 C 0.02 0.61 5.27 86.45 0.46 1.06 15 14 C 0.25 8.19 2.70 31.49 0.08 8.27 15 15 F -0.18 -5.56 16.48 44.97 0.74 -4.82 15 16 F -0.17 -5.84 16.48 44.97 0.74 -5.10 15 17 C 0.26 8.02 2.70 31.49 0.09 8.11 15 18 F -0.18 -5.25 16.48 44.97 0.74 -4.51 15 19 F -0.17 -5.49 16.48 44.97 0.74 -4.75 15 20 C 0.00 -0.01 5.14 86.45 0.44 0.43 15 21 H 0.03 1.54 8.14 -2.38 -0.02 1.52 15 22 H 0.04 1.39 7.08 -2.39 -0.02 1.38 15 23 H 0.07 3.26 6.07 -2.39 -0.01 3.24 15 24 H 0.26 13.48 8.31 -92.71 -0.77 12.71 15 25 H 0.12 4.15 7.38 -2.39 -0.02 4.13 15 26 H 0.09 2.98 7.95 -2.39 -0.02 2.96 15 27 H 0.09 2.71 7.88 -2.39 -0.02 2.69 15 28 H 0.13 3.70 7.68 -2.39 -0.02 3.68 15 Total: -1.00 -52.84 248.64 4.40 -48.44 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 1.19 Total: 2.01 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 2.45 Total: -2.21 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -4.22 Total: -72.07 kcal Atomic # 9 Polarization: -22.15 SS G_CDS: 2.96 Total: -19.19 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Total: -52.84 4.40 -48.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306152401.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.123 kcal (2) G-P(sol) polarization free energy of solvation -52.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds