Wall clock time and date at job start Mon Mar 30 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99875 * 2 1 4 4 H 1.48504 * 109.47230 * 240.00142 * 3 2 1 5 5 H 1.48498 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47513 * 120.00046 * 3 2 1 7 7 C 1.37875 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99986 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.62595 * 59.62067 * 9 7 2 11 11 C 1.53234 * 109.62766 * 180.02562 * 9 7 2 12 12 C 1.52960 * 109.40375 * 174.53742 * 11 9 7 13 13 C 1.52959 * 109.81412 * 296.39315 * 12 11 9 14 14 C 1.53234 * 109.40183 * 63.60777 * 13 12 11 15 15 C 1.51266 * 109.78588 * 299.14380 * 9 7 2 16 16 N 1.28011 * 120.84925 * 8.83898 * 15 9 7 17 17 N 1.40100 * 120.00168 * 173.41291 * 16 15 9 18 18 C 1.34774 * 120.00255 * 174.59814 * 17 16 15 19 19 N 1.34776 * 119.99995 * 359.97438 * 18 17 16 20 20 S 1.71205 * 120.00089 * 180.02562 * 18 17 16 21 21 H 0.97003 * 119.99923 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.48092 * 54.54865 * 11 9 7 23 23 H 1.09002 * 109.47719 * 294.51258 * 11 9 7 24 24 H 1.09000 * 109.40698 * 176.29302 * 12 11 9 25 25 H 1.08993 * 109.36045 * 56.46933 * 12 11 9 26 26 H 1.08998 * 109.48249 * 183.57674 * 13 12 11 27 27 H 1.08993 * 109.48964 * 303.62468 * 13 12 11 28 28 H 1.09001 * 109.62733 * 65.07947 * 14 13 12 29 29 H 1.08996 * 109.62905 * 185.65724 * 14 13 12 30 30 H 0.97003 * 119.99754 * 354.59420 * 17 16 15 31 31 H 0.97000 * 119.99933 * 359.97438 * 19 18 17 32 32 H 0.96997 * 120.00076 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6180 -2.5571 -0.8838 11 6 2.2436 -3.6665 0.0027 12 6 1.4787 -4.9838 0.1413 13 6 0.7608 -5.0270 1.4913 14 6 -0.2876 -3.9109 1.5463 15 6 0.3952 -2.5951 1.2453 16 7 0.2521 -1.5884 2.0229 17 7 -0.6511 -1.6519 3.0920 18 6 -0.7235 -0.6358 3.9744 19 7 0.0734 0.4413 3.8286 20 16 -1.8268 -0.7137 5.2812 21 1 -0.4850 0.8401 -0.0004 22 1 2.9331 -3.5566 0.8397 23 1 2.8039 -3.6681 -0.9323 24 1 2.1780 -5.8173 0.0759 25 1 0.7456 -5.0621 -0.6615 26 1 0.2701 -5.9929 1.6113 27 1 1.4854 -4.8850 2.2931 28 1 -1.0628 -4.0998 0.8036 29 1 -0.7312 -3.8739 2.5412 30 1 -1.2245 -2.4273 3.1971 31 1 0.6993 0.4850 3.0889 32 1 0.0216 1.1725 4.4639 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307426980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:12 Heat of formation + Delta-G solvation = 36.007433 kcal Electronic energy + Delta-G solvation = -15849.426005 eV Core-core repulsion = 13357.260012 eV Total energy + Delta-G solvation = -2492.165993 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.92144 -37.29595 -34.33981 -33.26018 -31.00856 -30.34358 -27.33803 -24.70439 -23.20289 -21.52898 -20.71151 -19.42949 -18.21315 -16.85820 -16.27980 -15.64839 -14.91837 -14.62705 -14.13216 -14.01294 -13.54208 -13.36484 -12.62766 -12.39063 -12.18204 -11.31339 -11.15950 -10.93921 -10.84553 -10.80769 -10.63514 -10.37766 -10.11679 -9.67191 -9.57171 -8.87441 -8.66506 -8.17839 -7.36823 -7.31532 -6.20447 -4.25482 1.78596 2.24411 3.14937 3.17844 3.23293 3.25658 3.40463 3.98601 4.26088 4.99325 5.07692 5.22162 5.25086 5.53227 5.77290 5.79322 5.88928 6.07109 6.16178 6.29619 6.32465 6.48467 6.64755 6.75639 6.85288 7.15964 7.23916 7.34619 7.72848 7.78323 8.04002 8.69430 8.97382 9.41398 10.87814 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.012252 C = 0.007389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.518924 B = 2284.813987 C = 3788.738065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.082 3.918 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.099 3.901 10 H 0.059 0.941 11 C -0.106 4.106 12 C -0.123 4.123 13 C -0.104 4.104 14 C -0.131 4.131 15 C 0.160 3.840 16 N -0.221 5.221 17 N -0.546 5.546 18 C 0.625 3.375 19 N -0.787 5.787 20 S -0.705 6.705 21 H 0.261 0.739 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.399 0.601 31 H 0.416 0.584 32 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 -6.043 -0.336 6.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.123 4.123 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.078 0.922 9 C 0.078 3.922 10 H 0.077 0.923 11 C -0.144 4.144 12 C -0.161 4.161 13 C -0.142 4.142 14 C -0.172 4.172 15 C -0.036 4.036 16 N -0.024 5.024 17 N -0.264 5.264 18 C 0.259 3.741 19 N -0.329 5.329 20 S -0.582 6.582 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.243 0.757 31 H 0.250 0.750 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 2.558 -4.993 0.596 5.642 hybrid contribution 0.470 0.306 -0.687 0.887 sum 3.028 -4.687 -0.091 5.581 Atomic orbital electron populations 1.69918 1.05841 1.26775 1.47826 1.24816 0.94564 0.98700 0.94182 0.86839 0.79819 0.83447 0.78982 1.20113 1.21310 1.20178 1.20831 0.92871 0.89493 1.53103 0.92214 1.17942 0.91843 0.94057 0.88326 0.92308 1.21633 0.98239 0.93219 1.01340 1.21605 0.99297 0.98494 0.96670 1.21409 0.97405 0.96861 0.98555 1.21416 0.99225 0.95368 1.01213 1.26259 0.94329 0.87652 0.95343 1.75191 1.07339 1.23960 0.95918 1.46834 1.36857 1.18480 1.24252 1.21582 0.85160 0.81243 0.86156 1.42841 1.39264 1.18393 1.32448 1.93422 1.44542 1.91892 1.28384 0.92948 0.92667 0.91998 0.92658 0.92044 0.92095 0.92116 0.89796 0.92488 0.75695 0.74964 0.74546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.75 11.36 55.43 0.63 -21.12 16 2 C 0.08 1.97 4.67 -17.82 -0.08 1.89 16 3 Si 0.88 19.05 29.54 -169.99 -5.02 14.03 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.53 -12.32 8.26 -34.44 -0.28 -12.61 16 8 H 0.06 1.41 7.75 -52.49 -0.41 1.00 16 9 C 0.10 2.03 2.37 -92.53 -0.22 1.81 16 10 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 11 C -0.11 -1.75 5.17 -26.63 -0.14 -1.89 16 12 C -0.12 -1.66 5.81 -26.77 -0.16 -1.81 16 13 C -0.10 -1.38 5.94 -26.63 -0.16 -1.54 16 14 C -0.13 -2.03 5.80 -27.48 -0.16 -2.19 16 15 C 0.16 3.12 5.93 -78.35 -0.46 2.65 16 16 N -0.22 -4.61 7.11 35.87 0.26 -4.35 16 17 N -0.55 -10.58 6.07 29.96 0.18 -10.39 16 18 C 0.63 12.29 8.13 -86.92 -0.71 11.59 16 19 N -0.79 -13.73 8.83 29.96 0.26 -13.46 16 20 S -0.71 -15.39 30.88 -107.50 -3.32 -18.71 16 21 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 0.85 5.83 -51.93 -0.30 0.54 16 30 H 0.40 7.21 6.33 -182.59 -1.16 6.05 16 31 H 0.42 7.72 7.87 -40.82 -0.32 7.40 16 32 H 0.42 6.22 8.81 -40.82 -0.36 5.86 16 LS Contribution 277.21 15.07 4.18 4.18 Total: -1.00 -27.56 277.21 -10.26 -37.82 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -5.06 Total: 14.10 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.37 Total: -2.09 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 1.33 Total: -49.32 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Atomic # 16 Polarization: -15.39 SS G_CDS: -3.32 Total: -18.71 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.56 -10.26 -37.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.827 kcal (2) G-P(sol) polarization free energy of solvation -27.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds