Wall clock time and date at job start Mon Mar 30 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99875 * 2 1 4 4 H 1.48504 * 109.47230 * 240.00142 * 3 2 1 5 5 H 1.48498 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47513 * 120.00046 * 3 2 1 7 7 C 1.37875 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99986 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.62595 * 59.62067 * 9 7 2 11 11 C 1.53234 * 109.62766 * 180.02562 * 9 7 2 12 12 C 1.52960 * 109.40375 * 174.53742 * 11 9 7 13 13 C 1.52959 * 109.81412 * 296.39315 * 12 11 9 14 14 C 1.53234 * 109.40183 * 63.60777 * 13 12 11 15 15 C 1.51266 * 109.78588 * 299.14380 * 9 7 2 16 16 N 1.28011 * 120.84925 * 8.83898 * 15 9 7 17 17 N 1.40100 * 120.00168 * 173.41291 * 16 15 9 18 18 C 1.34774 * 120.00255 * 174.59814 * 17 16 15 19 19 N 1.34776 * 119.99995 * 359.97438 * 18 17 16 20 20 S 1.71205 * 120.00089 * 180.02562 * 18 17 16 21 21 H 0.97003 * 119.99923 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.48092 * 54.54865 * 11 9 7 23 23 H 1.09002 * 109.47719 * 294.51258 * 11 9 7 24 24 H 1.09000 * 109.40698 * 176.29302 * 12 11 9 25 25 H 1.08993 * 109.36045 * 56.46933 * 12 11 9 26 26 H 1.08998 * 109.48249 * 183.57674 * 13 12 11 27 27 H 1.08993 * 109.48964 * 303.62468 * 13 12 11 28 28 H 1.09001 * 109.62733 * 65.07947 * 14 13 12 29 29 H 1.08996 * 109.62905 * 185.65724 * 14 13 12 30 30 H 0.97003 * 119.99754 * 354.59420 * 17 16 15 31 31 H 0.97000 * 119.99933 * 359.97438 * 19 18 17 32 32 H 0.96997 * 120.00076 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6180 -2.5571 -0.8838 11 6 2.2436 -3.6665 0.0027 12 6 1.4787 -4.9838 0.1413 13 6 0.7608 -5.0270 1.4913 14 6 -0.2876 -3.9109 1.5463 15 6 0.3952 -2.5951 1.2453 16 7 0.2521 -1.5884 2.0229 17 7 -0.6511 -1.6519 3.0920 18 6 -0.7235 -0.6358 3.9744 19 7 0.0734 0.4413 3.8286 20 16 -1.8268 -0.7137 5.2812 21 1 -0.4850 0.8401 -0.0004 22 1 2.9331 -3.5566 0.8397 23 1 2.8039 -3.6681 -0.9323 24 1 2.1780 -5.8173 0.0759 25 1 0.7456 -5.0621 -0.6615 26 1 0.2701 -5.9929 1.6113 27 1 1.4854 -4.8850 2.2931 28 1 -1.0628 -4.0998 0.8036 29 1 -0.7312 -3.8739 2.5412 30 1 -1.2245 -2.4273 3.1971 31 1 0.6993 0.4850 3.0889 32 1 0.0216 1.1725 4.4639 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307426980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:12 Heat of formation + Delta-G solvation = 20.474159 kcal Electronic energy + Delta-G solvation = -15850.099579 eV Core-core repulsion = 13357.260012 eV Total energy + Delta-G solvation = -2492.839566 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.39569 -38.72897 -35.78159 -34.92933 -32.50647 -31.81991 -28.76985 -26.34123 -24.69087 -22.96005 -22.06022 -20.87832 -19.71917 -18.49160 -17.81597 -17.19118 -16.54134 -16.24884 -15.63052 -15.28803 -14.93801 -14.62301 -14.17197 -13.92393 -13.58086 -12.84100 -12.70734 -12.54835 -12.42317 -12.27770 -12.12832 -11.68291 -11.43380 -11.28525 -11.05444 -10.45329 -10.34898 -9.75776 -9.09785 -8.99018 -8.05088 -6.12966 0.22362 0.61087 1.41072 1.47535 1.50351 1.64969 1.88324 2.46878 2.51219 3.28171 3.81551 3.91519 4.12436 4.26941 4.49309 4.61418 4.69366 4.77027 4.97552 5.10465 5.20130 5.25576 5.36598 5.40752 5.45376 5.64421 5.72554 5.77745 5.92638 6.30419 6.33968 6.86113 7.43827 7.55794 9.00558 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.012252 C = 0.007389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.518924 B = 2284.813987 C = 3788.738065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.051 3.949 3 Si 0.924 3.076 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.093 3.907 10 H 0.039 0.961 11 C -0.100 4.100 12 C -0.117 4.117 13 C -0.099 4.099 14 C -0.128 4.128 15 C 0.154 3.846 16 N -0.248 5.248 17 N -0.539 5.539 18 C 0.631 3.369 19 N -0.772 5.772 20 S -0.747 6.747 21 H 0.253 0.747 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.404 0.596 31 H 0.414 0.586 32 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -7.345 -0.412 8.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.151 4.151 3 Si 0.752 3.248 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.071 0.929 9 C 0.072 3.928 10 H 0.056 0.944 11 C -0.139 4.139 12 C -0.155 4.155 13 C -0.137 4.137 14 C -0.169 4.169 15 C -0.041 4.041 16 N -0.051 5.051 17 N -0.257 5.257 18 C 0.262 3.738 19 N -0.314 5.314 20 S -0.625 6.625 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.249 0.751 31 H 0.248 0.752 32 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.157 -6.296 0.520 7.062 hybrid contribution 0.366 0.701 -0.756 1.094 sum 3.523 -5.594 -0.235 6.616 Atomic orbital electron populations 1.70023 1.06634 1.26454 1.49213 1.25252 0.94977 1.00668 0.94232 0.86154 0.78792 0.80937 0.78922 1.20440 1.21968 1.19446 1.21158 0.92846 0.91071 1.52257 0.92873 1.17924 0.92311 0.94482 0.88082 0.94369 1.21557 0.97496 0.93576 1.01258 1.21569 0.99639 0.97262 0.96994 1.21432 0.96772 0.97295 0.98245 1.21474 0.99869 0.93830 1.01722 1.26373 0.93869 0.89280 0.94543 1.75186 1.08279 1.24912 0.96738 1.46749 1.36638 1.18544 1.23817 1.21319 0.85022 0.81792 0.85670 1.42781 1.38232 1.18119 1.32285 1.93480 1.46377 1.92514 1.30079 0.93819 0.93294 0.91717 0.89944 0.91508 0.88959 0.92481 0.88885 0.91871 0.75134 0.75183 0.73131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.50 11.36 21.45 0.24 -44.26 16 2 C 0.05 2.44 4.67 84.65 0.39 2.84 16 3 Si 0.92 38.89 29.54 68.60 2.03 40.92 16 4 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.54 -24.99 8.26 25.60 0.21 -24.78 16 8 H 0.05 2.49 7.75 -2.91 -0.02 2.47 16 9 C 0.09 3.75 2.37 -12.03 -0.03 3.72 16 10 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 11 C -0.10 -3.15 5.17 30.66 0.16 -2.99 16 12 C -0.12 -2.77 5.81 30.57 0.18 -2.59 16 13 C -0.10 -2.29 5.94 30.66 0.18 -2.11 16 14 C -0.13 -3.68 5.80 30.11 0.17 -3.50 16 15 C 0.15 5.85 5.93 46.89 0.28 6.13 16 16 N -0.25 -10.13 7.11 -40.33 -0.29 -10.42 16 17 N -0.54 -20.43 6.07 -59.11 -0.36 -20.79 16 18 C 0.63 24.35 8.13 179.06 1.46 25.81 16 19 N -0.77 -26.28 8.83 -59.11 -0.52 -26.81 16 20 S -0.75 -32.22 30.88 -56.49 -1.74 -33.96 16 21 H 0.25 12.79 8.31 -92.71 -0.77 12.02 16 22 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.06 1.73 5.83 -2.39 -0.01 1.72 16 30 H 0.40 14.16 6.33 -213.32 -1.35 12.81 16 31 H 0.41 15.06 7.87 -92.71 -0.73 14.33 16 32 H 0.43 12.38 8.81 -92.71 -0.82 11.57 16 Total: -1.00 -57.98 277.21 0.62 -57.35 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: -1.74 Total: 35.45 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 3.00 Total: 2.52 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -0.92 Total: -102.28 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Atomic # 16 Polarization: -32.22 SS G_CDS: -1.74 Total: -33.96 kcal Total: -57.98 0.62 -57.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.827 kcal (2) G-P(sol) polarization free energy of solvation -57.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds