Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86810 * 119.99891 * 2 1 4 4 H 1.48501 * 109.46445 * 269.99966 * 3 2 1 5 5 H 1.48496 * 109.46984 * 29.99911 * 3 2 1 6 6 H 1.48491 * 109.46985 * 149.99947 * 3 2 1 7 7 C 1.37879 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00479 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99416 * 359.72886 * 7 2 1 10 10 H 1.08998 * 109.62426 * 300.27413 * 9 7 2 11 11 C 1.53230 * 109.62478 * 179.89223 * 9 7 2 12 12 C 1.52997 * 109.38198 * 185.85252 * 11 9 7 13 13 C 1.52960 * 109.98744 * 63.30994 * 12 11 9 14 14 C 1.53228 * 109.40128 * 296.48835 * 13 12 11 15 15 C 1.51264 * 109.62672 * 60.65438 * 9 7 2 16 16 N 1.28015 * 120.85000 * 351.03336 * 15 9 7 17 17 N 1.40102 * 119.99749 * 175.02601 * 16 15 9 18 18 C 1.34783 * 119.99623 * 185.07551 * 17 16 15 19 19 N 1.34774 * 120.00083 * 359.97438 * 18 17 16 20 20 S 1.71202 * 119.99522 * 180.02562 * 18 17 16 21 21 H 0.96996 * 120.00200 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.48046 * 305.63902 * 11 9 7 23 23 H 1.08997 * 109.48425 * 65.67240 * 11 9 7 24 24 H 1.09003 * 109.26149 * 303.19569 * 12 11 9 25 25 H 1.09004 * 109.33998 * 183.47493 * 12 11 9 26 26 H 1.08995 * 109.48614 * 176.50537 * 13 12 11 27 27 H 1.08999 * 109.48891 * 56.47204 * 13 12 11 28 28 H 1.08997 * 109.62483 * 294.90271 * 14 13 12 29 29 H 1.09009 * 109.77935 * 174.43400 * 14 13 12 30 30 H 0.96996 * 120.00360 * 5.06818 * 17 16 15 31 31 H 0.96997 * 119.99954 * 0.02562 * 19 18 17 32 32 H 0.97003 * 119.99660 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0073 10 1 0.6235 -2.5548 0.8967 11 6 2.2437 -3.6665 0.0038 12 6 1.4780 -4.9836 -0.1365 13 6 0.7517 -5.0254 -1.4821 14 6 -0.2969 -3.9091 -1.5293 15 6 0.3873 -2.5935 -1.2309 16 7 0.2386 -1.5856 -2.0060 17 7 -0.4793 -1.7211 -3.2014 18 6 -0.5494 -0.6895 -4.0660 19 7 0.0706 0.4725 -3.7803 20 16 -1.4273 -0.8549 -5.5264 21 1 -0.4850 0.8400 0.0004 22 1 2.9305 -3.5571 -0.8355 23 1 2.8070 -3.6675 0.9369 24 1 0.7500 -5.0641 0.6708 25 1 2.1785 -5.8166 -0.0769 26 1 0.2603 -5.9911 -1.6002 27 1 1.4712 -4.8826 -2.2883 28 1 -1.0675 -4.0989 -0.7822 29 1 -0.7496 -3.8699 -2.5202 30 1 -0.9258 -2.5573 -3.4069 31 1 0.5677 0.5663 -2.9526 32 1 0.0198 1.2151 -4.4024 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307426981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = 37.344510 kcal Electronic energy + Delta-G solvation = -15858.143674 eV Core-core repulsion = 13366.035661 eV Total energy + Delta-G solvation = -2492.108013 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.93832 -37.28742 -34.33392 -33.28311 -31.00142 -30.35552 -27.34927 -24.71404 -23.21602 -21.53749 -20.69407 -19.45479 -18.18651 -16.86522 -16.30369 -15.67275 -14.93667 -14.61302 -14.12732 -13.97494 -13.56599 -13.35279 -12.65184 -12.41074 -12.19234 -11.31972 -11.17195 -10.94455 -10.84266 -10.81228 -10.62670 -10.38812 -10.12741 -9.68891 -9.55243 -8.82068 -8.64504 -8.23823 -7.36617 -7.34299 -6.21065 -4.26206 1.78228 2.24342 3.11768 3.21895 3.23439 3.26756 3.34279 3.99500 4.24972 4.98424 5.06660 5.21126 5.24913 5.51822 5.76002 5.78646 5.88284 6.06796 6.16694 6.29123 6.32220 6.48106 6.63888 6.75144 6.84144 7.16927 7.23507 7.34863 7.72198 7.79283 8.03375 8.69162 8.97804 9.40483 10.86952 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.012347 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.661490 B = 2267.293449 C = 3778.583004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.081 3.919 3 Si 0.882 3.118 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.097 3.903 10 H 0.057 0.943 11 C -0.104 4.104 12 C -0.123 4.123 13 C -0.105 4.105 14 C -0.131 4.131 15 C 0.163 3.837 16 N -0.220 5.220 17 N -0.550 5.550 18 C 0.625 3.375 19 N -0.786 5.786 20 S -0.705 6.705 21 H 0.260 0.740 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.398 0.602 31 H 0.417 0.583 32 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -5.797 0.858 6.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.123 4.123 3 Si 0.710 3.290 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.078 0.922 9 C 0.076 3.924 10 H 0.074 0.926 11 C -0.143 4.143 12 C -0.161 4.161 13 C -0.144 4.144 14 C -0.172 4.172 15 C -0.033 4.033 16 N -0.023 5.023 17 N -0.269 5.269 18 C 0.258 3.742 19 N -0.329 5.329 20 S -0.583 6.583 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.242 0.758 31 H 0.252 0.748 32 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.018 -4.762 -0.092 5.173 hybrid contribution 0.362 0.341 0.725 0.879 sum 2.380 -4.420 0.632 5.060 Atomic orbital electron populations 1.69932 1.05816 1.26589 1.47971 1.24826 0.94566 0.98711 0.94234 0.86763 0.80264 0.83757 0.78193 1.20728 1.21250 1.19752 1.20884 0.92908 0.89504 1.52892 0.92171 1.17941 0.91563 0.94076 0.88791 0.92569 1.21621 0.98149 0.93121 1.01389 1.21610 0.99264 0.98489 0.96708 1.21428 0.97400 0.96971 0.98589 1.21407 0.99115 0.95377 1.01265 1.26259 0.93247 0.87413 0.96355 1.75267 1.10697 1.23956 0.92342 1.46929 1.49241 1.13430 1.17316 1.21587 0.82467 0.81620 0.88477 1.42888 1.51555 1.12309 1.26141 1.93418 1.57013 1.92519 1.15310 0.93034 0.92696 0.91852 0.92033 0.92631 0.92081 0.92093 0.89566 0.92601 0.75752 0.74776 0.74573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.54 11.31 55.43 0.63 -20.91 16 2 C 0.08 1.94 4.66 -17.82 -0.08 1.86 16 3 Si 0.88 18.97 29.54 -169.99 -5.02 13.95 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.52 -12.30 8.26 -34.44 -0.28 -12.58 16 8 H 0.06 1.42 7.75 -52.49 -0.41 1.02 16 9 C 0.10 1.99 2.38 -92.53 -0.22 1.77 16 10 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 11 C -0.10 -1.73 5.19 -26.61 -0.14 -1.86 16 12 C -0.12 -1.66 5.80 -26.75 -0.16 -1.81 16 13 C -0.11 -1.40 5.94 -26.63 -0.16 -1.56 16 14 C -0.13 -2.03 5.93 -27.49 -0.16 -2.19 16 15 C 0.16 3.19 5.93 -78.36 -0.46 2.72 16 16 N -0.22 -4.61 7.05 35.87 0.25 -4.35 16 17 N -0.55 -10.67 6.15 29.96 0.18 -10.48 16 18 C 0.63 12.36 8.13 -86.91 -0.71 11.65 16 19 N -0.79 -13.98 8.83 29.96 0.26 -13.72 16 20 S -0.71 -15.39 30.88 -107.50 -3.32 -18.71 16 21 H 0.26 6.41 8.31 -40.82 -0.34 6.08 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.06 0.83 5.56 -51.92 -0.29 0.54 16 30 H 0.40 7.14 6.12 -182.60 -1.12 6.02 16 31 H 0.42 7.99 7.87 -40.82 -0.32 7.67 16 32 H 0.42 6.36 8.81 -40.82 -0.36 6.00 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -27.37 276.85 -10.22 -37.59 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.01 Total: 14.46 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.37 Total: -2.00 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 1.33 Total: -49.46 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Atomic # 16 Polarization: -15.39 SS G_CDS: -3.32 Total: -18.71 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.37 -10.22 -37.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.936 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds