Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86810 * 119.99891 * 2 1 4 4 H 1.48501 * 109.46445 * 269.99966 * 3 2 1 5 5 H 1.48496 * 109.46984 * 29.99911 * 3 2 1 6 6 H 1.48491 * 109.46985 * 149.99947 * 3 2 1 7 7 C 1.37879 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00479 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99416 * 359.72886 * 7 2 1 10 10 H 1.08998 * 109.62426 * 300.27413 * 9 7 2 11 11 C 1.53230 * 109.62478 * 179.89223 * 9 7 2 12 12 C 1.52997 * 109.38198 * 185.85252 * 11 9 7 13 13 C 1.52960 * 109.98744 * 63.30994 * 12 11 9 14 14 C 1.53228 * 109.40128 * 296.48835 * 13 12 11 15 15 C 1.51264 * 109.62672 * 60.65438 * 9 7 2 16 16 N 1.28015 * 120.85000 * 351.03336 * 15 9 7 17 17 N 1.40102 * 119.99749 * 175.02601 * 16 15 9 18 18 C 1.34783 * 119.99623 * 185.07551 * 17 16 15 19 19 N 1.34774 * 120.00083 * 359.97438 * 18 17 16 20 20 S 1.71202 * 119.99522 * 180.02562 * 18 17 16 21 21 H 0.96996 * 120.00200 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.48046 * 305.63902 * 11 9 7 23 23 H 1.08997 * 109.48425 * 65.67240 * 11 9 7 24 24 H 1.09003 * 109.26149 * 303.19569 * 12 11 9 25 25 H 1.09004 * 109.33998 * 183.47493 * 12 11 9 26 26 H 1.08995 * 109.48614 * 176.50537 * 13 12 11 27 27 H 1.08999 * 109.48891 * 56.47204 * 13 12 11 28 28 H 1.08997 * 109.62483 * 294.90271 * 14 13 12 29 29 H 1.09009 * 109.77935 * 174.43400 * 14 13 12 30 30 H 0.96996 * 120.00360 * 5.06818 * 17 16 15 31 31 H 0.96997 * 119.99954 * 0.02562 * 19 18 17 32 32 H 0.97003 * 119.99660 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0073 10 1 0.6235 -2.5548 0.8967 11 6 2.2437 -3.6665 0.0038 12 6 1.4780 -4.9836 -0.1365 13 6 0.7517 -5.0254 -1.4821 14 6 -0.2969 -3.9091 -1.5293 15 6 0.3873 -2.5935 -1.2309 16 7 0.2386 -1.5856 -2.0060 17 7 -0.4793 -1.7211 -3.2014 18 6 -0.5494 -0.6895 -4.0660 19 7 0.0706 0.4725 -3.7803 20 16 -1.4273 -0.8549 -5.5264 21 1 -0.4850 0.8400 0.0004 22 1 2.9305 -3.5571 -0.8355 23 1 2.8070 -3.6675 0.9369 24 1 0.7500 -5.0641 0.6708 25 1 2.1785 -5.8166 -0.0769 26 1 0.2603 -5.9911 -1.6002 27 1 1.4712 -4.8826 -2.2883 28 1 -1.0675 -4.0989 -0.7822 29 1 -0.7496 -3.8699 -2.5202 30 1 -0.9258 -2.5573 -3.4069 31 1 0.5677 0.5663 -2.9526 32 1 0.0198 1.2151 -4.4024 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307426981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = 22.005766 kcal Electronic energy + Delta-G solvation = -15858.808812 eV Core-core repulsion = 13366.035661 eV Total energy + Delta-G solvation = -2492.773151 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.41456 -38.72492 -35.78431 -34.94303 -32.50422 -31.82979 -28.78195 -26.34640 -24.70756 -22.96659 -22.04680 -20.90937 -19.69300 -18.49416 -17.84602 -17.22172 -16.56018 -16.23454 -15.62859 -15.25991 -14.95166 -14.60764 -14.18732 -13.92875 -13.60883 -12.86541 -12.69600 -12.54644 -12.41134 -12.27550 -12.14150 -11.68325 -11.44352 -11.29243 -11.03426 -10.45789 -10.27164 -9.81892 -9.09767 -9.01694 -8.04688 -6.12938 0.21421 0.60723 1.39202 1.47405 1.52062 1.70554 1.81636 2.46604 2.50579 3.27839 3.80739 3.89865 4.12872 4.25211 4.47379 4.60795 4.68839 4.77151 4.97225 5.10216 5.20190 5.24867 5.36040 5.40668 5.44490 5.64276 5.71754 5.77303 5.93458 6.29926 6.33111 6.86384 7.44418 7.55670 9.01115 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.012347 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.661490 B = 2267.293449 C = 3778.583004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.051 3.949 3 Si 0.924 3.076 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.052 0.948 9 C 0.091 3.909 10 H 0.036 0.964 11 C -0.099 4.099 12 C -0.117 4.117 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.157 3.843 16 N -0.248 5.248 17 N -0.543 5.543 18 C 0.631 3.369 19 N -0.772 5.772 20 S -0.744 6.744 21 H 0.254 0.746 22 H 0.047 0.953 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.403 0.597 31 H 0.414 0.586 32 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -7.063 0.932 7.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.151 4.151 3 Si 0.751 3.249 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.070 3.930 10 H 0.054 0.946 11 C -0.137 4.137 12 C -0.155 4.155 13 C -0.139 4.139 14 C -0.168 4.168 15 C -0.037 4.037 16 N -0.051 5.051 17 N -0.262 5.262 18 C 0.262 3.738 19 N -0.315 5.315 20 S -0.622 6.622 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.249 0.751 31 H 0.249 0.751 32 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.447 -6.029 -0.021 6.506 hybrid contribution 0.295 0.733 0.802 1.126 sum 2.741 -5.296 0.781 6.014 Atomic orbital electron populations 1.70026 1.06571 1.26438 1.49155 1.25252 0.94997 1.00637 0.94236 0.86106 0.79073 0.81300 0.78380 1.19796 1.21973 1.20046 1.21189 0.92794 0.91141 1.52275 0.93020 1.17934 0.92033 0.94489 0.88516 0.94595 1.21548 0.97408 0.93514 1.01274 1.21574 0.99612 0.97225 0.97055 1.21448 0.96751 0.97418 0.98267 1.21464 0.99715 0.93861 1.01800 1.26380 0.92681 0.89128 0.95560 1.75262 1.11834 1.24965 0.93072 1.46838 1.48866 1.13571 1.16907 1.21340 0.82437 0.82174 0.87887 1.42832 1.50508 1.12159 1.26002 1.93472 1.58764 1.93007 1.16988 0.93697 0.93404 0.91563 0.91451 0.89926 0.88913 0.92482 0.88653 0.91945 0.75099 0.75142 0.73184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.01 11.31 21.45 0.24 -43.77 16 2 C 0.05 2.44 4.66 84.66 0.39 2.83 16 3 Si 0.92 38.70 29.54 68.60 2.03 40.73 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -25.10 8.26 25.60 0.21 -24.89 16 8 H 0.05 2.44 7.75 -2.91 -0.02 2.42 16 9 C 0.09 3.69 2.38 -12.03 -0.03 3.66 16 10 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 11 C -0.10 -3.12 5.19 30.67 0.16 -2.96 16 12 C -0.12 -2.77 5.80 30.58 0.18 -2.59 16 13 C -0.10 -2.32 5.94 30.66 0.18 -2.14 16 14 C -0.13 -3.66 5.93 30.10 0.18 -3.49 16 15 C 0.16 5.99 5.93 46.89 0.28 6.27 16 16 N -0.25 -10.21 7.05 -40.33 -0.28 -10.50 16 17 N -0.54 -20.54 6.15 -59.11 -0.36 -20.91 16 18 C 0.63 24.42 8.13 179.05 1.46 25.88 16 19 N -0.77 -26.82 8.83 -59.11 -0.52 -27.34 16 20 S -0.74 -32.02 30.88 -56.49 -1.74 -33.76 16 21 H 0.25 12.59 8.31 -92.71 -0.77 11.81 16 22 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.06 1.71 5.56 -2.38 -0.01 1.70 16 30 H 0.40 13.99 6.12 -213.32 -1.31 12.69 16 31 H 0.41 15.56 7.87 -92.71 -0.73 14.83 16 32 H 0.43 12.65 8.81 -92.71 -0.82 11.84 16 Total: -1.00 -57.56 276.85 0.67 -56.89 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -1.69 Total: 36.08 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 3.01 Total: 2.58 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -0.93 Total: -102.52 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 16 Polarization: -32.02 SS G_CDS: -1.74 Total: -33.76 kcal Total: -57.56 0.67 -56.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.900 kcal (2) G-P(sol) polarization free energy of solvation -57.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds