Wall clock time and date at job start Mon Mar 30 2020 03:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.35315 * 125.86430 * 2 1 4 4 C 1.35358 * 106.16753 * 180.11268 * 3 2 1 5 5 C 1.50697 * 126.74648 * 179.85148 * 4 3 2 6 6 O 1.42904 * 109.46951 * 154.71711 * 5 4 3 7 7 Si 1.63101 * 113.99895 * 209.99754 * 6 5 4 8 8 C 1.86302 * 109.46961 * 59.99997 * 7 6 5 9 9 C 1.86292 * 109.46998 * 179.97438 * 7 6 5 10 10 C 1.86302 * 109.47288 * 299.99942 * 7 6 5 11 11 C 1.50706 * 109.47335 * 274.71679 * 5 4 3 12 12 N 1.27936 * 120.00444 * 129.72652 * 11 5 4 13 13 Si 1.86803 * 119.99620 * 310.00222 * 11 5 4 14 14 H 1.48494 * 109.47228 * 359.97438 * 13 11 5 15 15 H 1.48500 * 109.47000 * 119.99808 * 13 11 5 16 16 H 1.48501 * 109.46793 * 239.99901 * 13 11 5 17 17 N 1.33763 * 106.49642 * 359.59416 * 4 3 2 18 18 N 1.28633 * 108.88788 * 0.25850 * 17 4 3 19 19 H 1.08997 * 109.47023 * 270.32987 * 1 2 3 20 20 H 1.09004 * 109.46802 * 30.32923 * 1 2 3 21 21 H 1.08993 * 109.46883 * 150.32332 * 1 2 3 22 22 H 1.07997 * 126.92004 * 359.97438 * 3 2 1 23 23 H 1.09000 * 109.47562 * 34.71709 * 5 4 3 24 24 H 1.09003 * 109.47232 * 59.99691 * 8 7 6 25 25 H 1.09004 * 109.47233 * 180.02562 * 8 7 6 26 26 H 1.08999 * 109.47118 * 299.99930 * 8 7 6 27 27 H 1.08999 * 109.47598 * 59.99982 * 9 7 6 28 28 H 1.09004 * 109.47549 * 180.02562 * 9 7 6 29 29 H 1.09001 * 109.47453 * 300.00042 * 9 7 6 30 30 H 1.08999 * 109.47054 * 59.99909 * 10 7 6 31 31 H 1.09004 * 109.47175 * 179.97438 * 10 7 6 32 32 H 1.08989 * 109.47116 * 300.00099 * 10 7 6 33 33 H 0.97000 * 120.00474 * 180.02562 * 12 11 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2579 1.0966 0.0000 4 6 3.5323 0.6404 -0.0026 5 6 4.7881 1.4734 -0.0067 6 8 5.8598 0.7222 0.5670 7 14 6.9816 1.6358 1.3201 8 6 6.1779 2.5913 2.7029 9 6 8.3123 0.5349 2.0183 10 6 7.7353 2.8249 0.0999 11 6 5.1387 1.8466 -1.4241 12 7 5.3859 3.0660 -1.7221 13 14 5.2047 0.5299 -2.7475 14 1 4.8753 -0.7891 -2.1503 15 1 4.2221 0.8502 -3.8139 16 1 6.5698 0.4819 -3.3303 17 7 3.4576 -0.6951 0.0051 18 7 2.2192 -1.0430 0.0065 19 1 -0.3633 0.0059 1.0276 20 1 -0.3633 0.8871 -0.5190 21 1 -0.3633 -0.8928 -0.5088 22 1 1.9382 2.1282 -0.0004 23 1 4.6254 2.3789 0.5778 24 1 5.7369 1.8956 3.4168 25 1 6.9275 3.2022 3.2059 26 1 5.3990 3.2353 2.2947 27 1 8.7826 -0.0244 1.2096 28 1 9.0618 1.1454 2.5220 29 1 7.8711 -0.1605 2.7324 30 1 6.9564 3.4690 -0.3083 31 1 8.4846 3.4358 0.6033 32 1 8.2054 2.2660 -0.7091 33 1 5.6112 3.3063 -2.6345 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307532157.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:27 Heat of formation + Delta-G solvation = 51.265772 kcal Electronic energy + Delta-G solvation = -16032.734862 eV Core-core repulsion = 13448.028358 eV Total energy + Delta-G solvation = -2584.706505 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.23635 -39.07753 -35.88560 -35.51427 -32.62171 -29.46968 -29.14193 -28.58020 -28.28747 -27.78003 -23.25442 -22.91143 -21.13341 -18.56476 -18.32360 -17.57950 -16.92666 -16.24973 -16.11656 -15.39139 -14.53880 -14.36000 -14.29515 -14.17513 -13.98137 -13.69945 -13.54051 -13.21911 -13.19451 -13.01143 -12.88556 -12.56898 -12.44765 -12.09438 -11.71209 -11.64273 -11.52173 -10.98406 -10.64019 -10.40478 -10.34455 -9.84747 0.46734 0.64861 1.10779 1.30398 1.48627 1.54379 1.60645 1.76741 1.94975 2.10785 2.14016 2.52747 3.22166 3.48342 3.59858 3.85150 3.91840 4.04053 4.17643 4.22782 4.61738 4.69939 4.75851 4.79288 4.83589 4.85129 4.88490 4.98998 5.06088 5.34286 5.55045 5.55954 5.65978 5.76881 6.64463 7.59588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.294 5.294 3 C -0.035 4.035 4 C -0.030 4.030 5 C 0.245 3.755 6 O -0.599 6.599 7 Si 1.256 2.744 8 C -0.508 4.508 9 C -0.467 4.467 10 C -0.518 4.518 11 C -0.024 4.024 12 N -0.607 5.607 13 Si 0.910 3.090 14 H -0.203 1.203 15 H -0.248 1.248 16 H -0.239 1.239 17 N -0.226 5.226 18 N -0.086 5.086 19 H 0.094 0.906 20 H 0.100 0.900 21 H 0.104 0.896 22 H 0.195 0.805 23 H 0.097 0.903 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 3.332 -0.363 5.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.087 5.087 3 C -0.186 4.186 4 C -0.169 4.169 5 C 0.185 3.815 6 O -0.555 6.555 7 Si 1.393 2.607 8 C -0.610 4.610 9 C -0.573 4.573 10 C -0.620 4.620 11 C -0.274 4.274 12 N -0.223 5.223 13 Si 0.725 3.275 14 H -0.124 1.124 15 H -0.171 1.171 16 H -0.162 1.162 17 N -0.093 5.093 18 N -0.066 5.066 19 H 0.112 0.888 20 H 0.119 0.881 21 H 0.122 0.878 22 H 0.212 0.788 23 H 0.114 0.886 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.178 1.758 -0.508 4.561 hybrid contribution 0.105 1.551 -0.323 1.587 sum -4.072 3.309 -0.832 5.313 Atomic orbital electron populations 1.22342 0.72282 1.06214 1.05340 1.47334 1.09660 1.04739 1.46935 1.23313 0.90473 0.95140 1.09709 1.21492 0.93793 0.92154 1.09510 1.18390 0.82122 0.90783 0.90208 1.85457 1.42092 1.54024 1.73962 0.77296 0.60413 0.59940 0.63070 1.26950 1.08150 1.09912 1.15955 1.26303 1.12973 1.10718 1.07294 1.27188 1.08714 1.13225 1.12897 1.30743 0.93373 0.99709 1.03562 1.68035 1.06469 1.20351 1.27438 0.85797 0.82421 0.82254 0.77024 1.12396 1.17139 1.16171 1.75236 1.08722 1.11150 1.14152 1.78448 0.96444 1.12022 1.19702 0.88763 0.88104 0.87751 0.78795 0.88580 0.91002 0.90739 0.91312 0.90726 0.90588 0.90714 0.89127 0.91181 0.91597 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.38 11.39 59.85 0.68 0.31 16 2 N -0.29 -0.03 3.74 -68.05 -0.25 -0.28 16 3 C -0.03 0.02 11.55 -17.04 -0.20 -0.17 16 4 C -0.03 -0.06 4.90 -82.78 -0.41 -0.47 16 5 C 0.25 0.24 2.34 -29.03 -0.07 0.17 16 6 O -0.60 -1.12 7.95 -35.23 -0.28 -1.40 16 7 Si 1.26 -0.42 12.68 -169.99 -2.16 -2.57 16 8 C -0.51 0.14 8.56 101.05 0.87 1.01 16 9 C -0.47 -0.13 8.65 101.05 0.87 0.74 16 10 C -0.52 -0.13 7.98 101.05 0.81 0.67 16 11 C -0.02 -0.02 4.11 -13.90 -0.06 -0.07 16 12 N -0.61 0.06 11.42 56.22 0.64 0.70 16 13 Si 0.91 1.52 28.05 -169.99 -4.77 -3.25 16 14 H -0.20 -0.77 6.51 56.52 0.37 -0.40 16 15 H -0.25 -0.42 7.11 56.52 0.40 -0.02 16 16 H -0.24 -0.43 7.11 56.52 0.40 -0.03 16 17 N -0.23 -1.15 11.45 33.29 0.38 -0.77 16 18 N -0.09 -0.35 13.16 60.35 0.79 0.45 16 19 H 0.09 -0.55 8.14 -51.93 -0.42 -0.98 16 20 H 0.10 -0.73 8.14 -51.93 -0.42 -1.15 16 21 H 0.10 -0.53 8.14 -51.93 -0.42 -0.95 16 22 H 0.20 -0.92 8.06 -52.49 -0.42 -1.35 16 23 H 0.10 -0.12 6.12 -51.93 -0.32 -0.43 16 24 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 25 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 26 H 0.07 -0.05 7.10 -51.93 -0.37 -0.42 16 27 H 0.07 0.04 7.96 -51.93 -0.41 -0.38 16 28 H 0.08 -0.04 7.96 -51.93 -0.41 -0.45 16 29 H 0.07 0.05 7.96 -51.93 -0.41 -0.37 16 30 H 0.09 0.05 5.49 -51.93 -0.29 -0.23 16 31 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 32 H 0.06 0.04 7.96 -51.94 -0.41 -0.37 16 33 H 0.34 -0.54 8.23 -40.82 -0.34 -0.88 16 LS Contribution 283.84 15.07 4.28 4.28 Total: 0.00 -6.76 283.84 -3.59 -10.35 By element: Atomic # 1 Polarization: -4.97 SS G_CDS: -4.72 Total: -9.69 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 2.50 Total: 2.18 kcal Atomic # 7 Polarization: -1.46 SS G_CDS: 1.56 Total: 0.10 kcal Atomic # 8 Polarization: -1.12 SS G_CDS: -0.28 Total: -1.40 kcal Atomic # 14 Polarization: 1.10 SS G_CDS: -6.92 Total: -5.82 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -6.76 -3.59 -10.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307532157.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.614 kcal (2) G-P(sol) polarization free energy of solvation -6.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds