Wall clock time and date at job start Mon Mar 30 2020 03:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.35315 * 125.86430 * 2 1 4 4 C 1.35358 * 106.16753 * 180.11268 * 3 2 1 5 5 C 1.50697 * 126.74648 * 179.85148 * 4 3 2 6 6 O 1.42904 * 109.46951 * 154.71711 * 5 4 3 7 7 Si 1.63101 * 113.99895 * 209.99754 * 6 5 4 8 8 C 1.86302 * 109.46961 * 59.99997 * 7 6 5 9 9 C 1.86292 * 109.46998 * 179.97438 * 7 6 5 10 10 C 1.86302 * 109.47288 * 299.99942 * 7 6 5 11 11 C 1.50706 * 109.47335 * 274.71679 * 5 4 3 12 12 N 1.27936 * 120.00444 * 129.72652 * 11 5 4 13 13 Si 1.86803 * 119.99620 * 310.00222 * 11 5 4 14 14 H 1.48494 * 109.47228 * 359.97438 * 13 11 5 15 15 H 1.48500 * 109.47000 * 119.99808 * 13 11 5 16 16 H 1.48501 * 109.46793 * 239.99901 * 13 11 5 17 17 N 1.33763 * 106.49642 * 359.59416 * 4 3 2 18 18 N 1.28633 * 108.88788 * 0.25850 * 17 4 3 19 19 H 1.08997 * 109.47023 * 270.32987 * 1 2 3 20 20 H 1.09004 * 109.46802 * 30.32923 * 1 2 3 21 21 H 1.08993 * 109.46883 * 150.32332 * 1 2 3 22 22 H 1.07997 * 126.92004 * 359.97438 * 3 2 1 23 23 H 1.09000 * 109.47562 * 34.71709 * 5 4 3 24 24 H 1.09003 * 109.47232 * 59.99691 * 8 7 6 25 25 H 1.09004 * 109.47233 * 180.02562 * 8 7 6 26 26 H 1.08999 * 109.47118 * 299.99930 * 8 7 6 27 27 H 1.08999 * 109.47598 * 59.99982 * 9 7 6 28 28 H 1.09004 * 109.47549 * 180.02562 * 9 7 6 29 29 H 1.09001 * 109.47453 * 300.00042 * 9 7 6 30 30 H 1.08999 * 109.47054 * 59.99909 * 10 7 6 31 31 H 1.09004 * 109.47175 * 179.97438 * 10 7 6 32 32 H 1.08989 * 109.47116 * 300.00099 * 10 7 6 33 33 H 0.97000 * 120.00474 * 180.02562 * 12 11 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2579 1.0966 0.0000 4 6 3.5323 0.6404 -0.0026 5 6 4.7881 1.4734 -0.0067 6 8 5.8598 0.7222 0.5670 7 14 6.9816 1.6358 1.3201 8 6 6.1779 2.5913 2.7029 9 6 8.3123 0.5349 2.0183 10 6 7.7353 2.8249 0.0999 11 6 5.1387 1.8466 -1.4241 12 7 5.3859 3.0660 -1.7221 13 14 5.2047 0.5299 -2.7475 14 1 4.8753 -0.7891 -2.1503 15 1 4.2221 0.8502 -3.8139 16 1 6.5698 0.4819 -3.3303 17 7 3.4576 -0.6951 0.0051 18 7 2.2192 -1.0430 0.0065 19 1 -0.3633 0.0059 1.0276 20 1 -0.3633 0.8871 -0.5190 21 1 -0.3633 -0.8928 -0.5088 22 1 1.9382 2.1282 -0.0004 23 1 4.6254 2.3789 0.5778 24 1 5.7369 1.8956 3.4168 25 1 6.9275 3.2022 3.2059 26 1 5.3990 3.2353 2.2947 27 1 8.7826 -0.0244 1.2096 28 1 9.0618 1.1454 2.5220 29 1 7.8711 -0.1605 2.7324 30 1 6.9564 3.4690 -0.3083 31 1 8.4846 3.4358 0.6033 32 1 8.2054 2.2660 -0.7091 33 1 5.6112 3.3063 -2.6345 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307532158.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:31 Heat of formation + Delta-G solvation = 54.942389 kcal Electronic energy + Delta-G solvation = -16032.575432 eV Core-core repulsion = 13448.028358 eV Total energy + Delta-G solvation = -2584.547075 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.24897 -39.09481 -35.90658 -35.45246 -32.64141 -29.45436 -28.96375 -28.54015 -28.27144 -27.78751 -23.25142 -22.89938 -21.14363 -18.57040 -18.24123 -17.54375 -16.91959 -16.23526 -16.14682 -15.33013 -14.63800 -14.25238 -14.10163 -14.01705 -13.93259 -13.67674 -13.45163 -13.22608 -13.16097 -13.03429 -12.92668 -12.59082 -12.51739 -12.23653 -11.75375 -11.71019 -11.55175 -10.96968 -10.63742 -10.42029 -10.35459 -9.88114 0.45682 0.65966 1.01730 1.34371 1.38640 1.50921 1.54933 1.75949 1.95641 1.99297 2.17125 2.53875 3.26624 3.54777 3.82640 4.03034 4.15762 4.21862 4.37988 4.65237 4.69207 4.78655 4.79048 4.80664 4.84120 4.87848 4.90007 4.99273 5.05497 5.36878 5.59517 5.66310 5.68701 5.76182 6.66437 7.54249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.289 5.289 3 C -0.017 4.017 4 C -0.052 4.052 5 C 0.240 3.760 6 O -0.621 6.621 7 Si 1.283 2.717 8 C -0.509 4.509 9 C -0.480 4.480 10 C -0.521 4.521 11 C -0.016 4.016 12 N -0.597 5.597 13 Si 0.922 3.078 14 H -0.240 1.240 15 H -0.247 1.247 16 H -0.244 1.244 17 N -0.270 5.270 18 N -0.129 5.129 19 H 0.108 0.892 20 H 0.133 0.867 21 H 0.103 0.897 22 H 0.239 0.761 23 H 0.122 0.878 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 5.360 -0.180 7.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.082 5.082 3 C -0.170 4.170 4 C -0.192 4.192 5 C 0.180 3.820 6 O -0.577 6.577 7 Si 1.419 2.581 8 C -0.612 4.612 9 C -0.585 4.585 10 C -0.623 4.623 11 C -0.267 4.267 12 N -0.214 5.214 13 Si 0.740 3.260 14 H -0.162 1.162 15 H -0.171 1.171 16 H -0.167 1.167 17 N -0.136 5.136 18 N -0.108 5.108 19 H 0.126 0.874 20 H 0.151 0.849 21 H 0.122 0.878 22 H 0.255 0.745 23 H 0.139 0.861 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.075 3.761 -0.344 6.326 hybrid contribution 0.348 0.918 -0.399 1.060 sum -4.727 4.680 -0.744 6.693 Atomic orbital electron populations 1.22761 0.69740 1.07812 1.06760 1.47732 1.11093 1.04222 1.45132 1.23974 0.89382 0.96565 1.07108 1.21872 0.95400 0.91486 1.10447 1.18594 0.81631 0.91335 0.90422 1.85456 1.42758 1.55169 1.74323 0.76811 0.59469 0.59178 0.62626 1.26941 1.08524 1.09991 1.15695 1.26466 1.13839 1.11044 1.07188 1.27227 1.08856 1.13330 1.12875 1.30410 0.94104 0.99144 1.03060 1.67995 1.05684 1.19588 1.28148 0.85628 0.81836 0.81157 0.77408 1.16229 1.17106 1.16734 1.75158 1.09665 1.13200 1.15624 1.78355 0.96717 1.13772 1.21995 0.87384 0.84899 0.87832 0.74455 0.86130 0.91518 0.90249 0.90426 0.91311 0.89744 0.91340 0.89137 0.90680 0.92175 0.82768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.73 11.39 127.77 1.46 0.73 16 2 N -0.29 0.03 3.74 -369.21 -1.38 -1.35 16 3 C -0.02 0.04 11.55 83.49 0.96 1.01 16 4 C -0.05 -0.23 4.90 41.60 0.20 -0.03 16 5 C 0.24 0.42 2.34 29.10 0.07 0.49 16 6 O -0.62 -2.81 7.95 -148.98 -1.18 -3.99 16 7 Si 1.28 -0.73 12.68 68.60 0.87 0.14 16 8 C -0.51 0.71 8.56 113.37 0.97 1.68 16 9 C -0.48 -0.71 8.65 113.37 0.98 0.27 16 10 C -0.52 -0.02 7.98 113.37 0.91 0.89 16 11 C -0.02 -0.02 4.11 88.68 0.36 0.35 16 12 N -0.60 0.80 11.42 24.11 0.28 1.08 16 13 Si 0.92 4.24 28.05 68.60 1.92 6.16 16 14 H -0.24 -2.61 6.51 99.48 0.65 -1.96 16 15 H -0.25 -1.00 7.11 99.48 0.71 -0.30 16 16 H -0.24 -1.19 7.11 99.48 0.71 -0.48 16 17 N -0.27 -3.26 11.45 -48.60 -0.56 -3.82 16 18 N -0.13 -1.23 13.16 37.02 0.49 -0.74 16 19 H 0.11 -1.41 8.14 -2.39 -0.02 -1.43 16 20 H 0.13 -2.27 8.14 -2.38 -0.02 -2.29 16 21 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 22 H 0.24 -3.07 8.06 -2.91 -0.02 -3.09 16 23 H 0.12 -0.47 6.12 -2.39 -0.01 -0.49 16 24 H 0.07 0.00 7.96 -2.39 -0.02 -0.02 16 25 H 0.08 -0.18 7.96 -2.38 -0.02 -0.20 16 26 H 0.08 -0.24 7.10 -2.39 -0.02 -0.26 16 27 H 0.07 0.17 7.96 -2.39 -0.02 0.15 16 28 H 0.08 -0.06 7.96 -2.39 -0.02 -0.08 16 29 H 0.07 0.18 7.96 -2.39 -0.02 0.16 16 30 H 0.09 0.01 5.49 -2.39 -0.01 -0.01 16 31 H 0.07 -0.08 7.96 -2.38 -0.02 -0.09 16 32 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 33 H 0.35 -1.52 8.23 -92.71 -0.76 -2.28 16 Total: 0.00 -18.24 283.84 7.39 -10.85 By element: Atomic # 1 Polarization: -14.74 SS G_CDS: 1.04 Total: -13.70 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.91 Total: 5.38 kcal Atomic # 7 Polarization: -3.66 SS G_CDS: -1.17 Total: -4.83 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -1.18 Total: -3.99 kcal Atomic # 14 Polarization: 3.50 SS G_CDS: 2.79 Total: 6.30 kcal Total: -18.24 7.39 -10.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307532158.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.791 kcal (2) G-P(sol) polarization free energy of solvation -18.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds