Wall clock time and date at job start Mon Mar 30 2020 03:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47199 * 2 1 4 4 N 1.46494 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00359 * 264.50385 * 4 3 2 6 6 H 1.07998 * 120.00574 * 191.04144 * 5 4 3 7 7 C 1.38810 * 119.99898 * 11.03775 * 5 4 3 8 8 N 1.31621 * 120.00175 * 19.16565 * 7 5 4 9 9 Si 1.86801 * 120.00178 * 199.16662 * 7 5 4 10 10 H 1.48494 * 109.47234 * 84.97697 * 9 7 5 11 11 H 1.48500 * 109.46951 * 204.97672 * 9 7 5 12 12 H 1.48504 * 109.46919 * 324.97362 * 9 7 5 13 13 C 1.46504 * 120.00005 * 84.50157 * 4 3 2 14 14 C 1.50704 * 109.47262 * 270.00147 * 13 4 3 15 15 C 1.33325 * 125.95248 * 89.99646 * 14 13 4 16 16 N 1.32119 * 114.57912 * 179.97438 * 15 14 13 17 17 C 1.29684 * 116.86435 * 0.02562 * 16 15 14 18 18 N 1.38618 * 124.94842 * 179.97438 * 17 16 15 19 19 S 1.70969 * 110.10470 * 0.23524 * 17 16 15 20 20 H 1.09000 * 109.46944 * 300.00032 * 1 2 3 21 21 H 1.09000 * 109.47223 * 59.99517 * 1 2 3 22 22 H 1.08998 * 109.47272 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46944 * 239.99968 * 2 1 3 24 24 H 1.08998 * 109.46986 * 120.00007 * 2 1 3 25 25 H 1.09003 * 109.46705 * 60.00105 * 3 2 1 26 26 H 1.08998 * 109.47157 * 299.99902 * 3 2 1 27 27 H 0.96990 * 120.00558 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47062 * 149.99728 * 13 4 3 29 29 H 1.08994 * 109.47016 * 30.00068 * 13 4 3 30 30 H 1.08004 * 122.70568 * 0.02822 * 15 14 13 31 31 H 0.96994 * 119.99445 * 0.02562 * 18 17 16 32 32 H 0.96995 * 119.99935 * 179.74134 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5562 1.1813 6 1 5.2542 1.7353 1.1732 7 6 3.5140 1.4414 2.3886 8 7 2.3323 0.8632 2.4294 9 14 4.2824 2.1074 3.9556 10 1 3.9728 3.5542 4.0826 11 1 3.7307 1.3786 5.1260 12 1 5.7545 1.9188 3.9040 13 6 4.2380 1.3207 -1.2620 14 6 4.4893 -0.1353 -1.5586 15 6 3.6853 -0.9434 -2.2502 16 7 4.1271 -2.1822 -2.3758 17 6 5.2668 -2.4569 -1.8216 18 7 5.8845 -3.6976 -1.8489 19 16 5.8932 -1.0679 -1.0461 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 1.8606 0.7827 3.2730 28 1 5.1904 1.8447 -1.1812 29 1 3.6493 1.7593 -2.0676 30 1 2.7489 -0.6117 -2.6742 31 1 5.4616 -4.4398 -2.3083 32 1 6.7415 -3.8223 -1.4121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308574744.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:10 Heat of formation + Delta-G solvation = 71.159194 kcal Electronic energy + Delta-G solvation = -15639.029471 eV Core-core repulsion = 13148.387773 eV Total energy + Delta-G solvation = -2490.641698 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.90760 -36.31607 -34.14467 -31.94766 -31.61324 -28.84112 -25.55420 -25.23259 -23.36247 -21.48052 -19.96322 -19.41446 -18.09803 -16.77028 -15.56644 -15.39187 -14.96374 -14.10541 -13.84930 -13.63243 -13.40435 -13.04165 -12.56031 -11.92110 -11.59018 -11.39066 -10.97501 -10.69754 -10.59269 -10.40913 -10.26540 -9.97714 -9.88127 -9.66864 -9.18241 -8.99218 -8.46680 -8.32895 -7.21389 -6.85570 -5.74033 -3.10179 1.70634 1.86039 2.56461 3.38110 3.44888 3.45397 3.67087 3.90346 4.49339 5.35846 5.51659 5.59375 6.02324 6.08407 6.30870 6.31927 6.48310 6.62034 6.65375 6.77382 6.85950 7.02676 7.27343 7.31409 7.37917 7.62143 7.66366 7.85898 8.20701 8.36499 8.60718 9.23320 9.82594 10.27581 11.25504 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.009348 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.635845 B = 2994.596637 C = 3620.620679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.172 3.828 4 N -0.582 5.582 5 C -0.244 4.244 6 H 0.073 0.927 7 C -0.002 4.002 8 N -0.892 5.892 9 Si 0.903 3.097 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.281 1.281 13 C 0.217 3.783 14 C -0.219 4.219 15 C 0.048 3.952 16 N -0.547 5.547 17 C 0.279 3.721 18 N -0.832 5.832 19 S 0.087 5.913 20 H 0.049 0.951 21 H 0.029 0.971 22 H 0.030 0.970 23 H 0.028 0.972 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.002 0.998 27 H 0.252 0.748 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.163 0.837 31 H 0.403 0.597 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 -3.784 -6.947 9.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.048 3.952 4 N -0.300 5.300 5 C -0.374 4.374 6 H 0.091 0.909 7 C -0.200 4.200 8 N -0.537 5.537 9 Si 0.734 3.266 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.207 1.207 13 C 0.087 3.913 14 C -0.346 4.346 15 C -0.100 4.100 16 N -0.272 5.272 17 C -0.093 4.093 18 N -0.386 5.386 19 S 0.333 5.667 20 H 0.068 0.932 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.180 0.820 31 H 0.233 0.767 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.876 -3.928 -6.487 9.015 hybrid contribution -0.419 -0.223 0.633 0.791 sum 4.457 -4.150 -5.853 8.447 Atomic orbital electron populations 1.21626 0.98912 0.99071 0.99829 1.22225 0.92538 1.00498 1.01880 1.20966 0.81297 0.94694 0.98278 1.44568 1.02110 1.81883 1.01423 1.19315 0.93112 1.41515 0.83415 0.90891 1.24823 0.97454 1.00154 0.97562 1.70142 1.14929 1.43904 1.24728 0.86279 0.78513 0.78807 0.83045 1.21513 1.21903 1.20707 1.19422 0.96392 0.86036 0.89486 1.27188 0.96744 1.05069 1.05559 1.20965 1.00579 0.86610 1.01890 1.66275 1.12255 1.20987 1.27707 1.23481 0.94451 0.92999 0.98366 1.41296 1.25099 1.07683 1.64478 1.83880 1.25484 1.02170 1.55191 0.93176 0.95171 0.95072 0.95338 0.88600 0.89062 0.97971 0.93767 0.92637 0.91948 0.82036 0.76682 0.76286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.91 37.16 0.37 -2.35 16 2 C -0.13 -3.03 5.57 -26.73 -0.15 -3.18 16 3 C 0.17 4.05 4.92 -4.04 -0.02 4.03 16 4 N -0.58 -13.89 2.52 -174.61 -0.44 -14.33 16 5 C -0.24 -6.35 9.74 -15.06 -0.15 -6.50 16 6 H 0.07 1.88 7.88 -52.49 -0.41 1.47 16 7 C 0.00 -0.06 5.02 -17.43 -0.09 -0.14 16 8 N -0.89 -24.28 8.25 55.49 0.46 -23.82 16 9 Si 0.90 21.28 29.60 -169.99 -5.03 16.24 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.22 4.38 6.23 -5.19 -0.03 4.35 16 14 C -0.22 -4.35 5.88 -36.02 -0.21 -4.56 16 15 C 0.05 0.95 9.21 -19.14 -0.18 0.77 16 16 N -0.55 -10.69 10.60 -15.20 -0.16 -10.85 16 17 C 0.28 4.88 8.58 -87.67 -0.75 4.12 16 18 N -0.83 -10.60 9.08 29.77 0.27 -10.32 16 19 S 0.09 1.56 23.22 -107.50 -2.50 -0.93 16 20 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.03 0.64 4.88 -51.93 -0.25 0.38 16 24 H 0.10 2.59 6.22 -51.93 -0.32 2.27 16 25 H 0.09 2.39 5.88 -51.93 -0.31 2.09 16 26 H 0.00 0.05 7.97 -51.93 -0.41 -0.37 16 27 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.06 1.08 8.02 -51.93 -0.42 0.66 16 29 H 0.06 1.14 7.95 -51.93 -0.41 0.72 16 30 H 0.16 3.00 7.40 -52.48 -0.39 2.61 16 31 H 0.40 4.49 8.95 -40.82 -0.37 4.12 16 32 H 0.41 4.04 8.95 -40.82 -0.37 3.67 16 LS Contribution 276.46 15.07 4.17 4.17 Total: -1.00 -29.06 276.46 -8.50 -37.56 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.06 Total: 5.75 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.21 Total: -3.46 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.13 Total: -59.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.50 Total: -0.93 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.06 -8.50 -37.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308574744.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.724 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds