Wall clock time and date at job start Mon Mar 30 2020 03:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47199 * 2 1 4 4 N 1.46494 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00359 * 264.50385 * 4 3 2 6 6 H 1.07998 * 120.00574 * 191.04144 * 5 4 3 7 7 C 1.38810 * 119.99898 * 11.03775 * 5 4 3 8 8 N 1.31621 * 120.00175 * 19.16565 * 7 5 4 9 9 Si 1.86801 * 120.00178 * 199.16662 * 7 5 4 10 10 H 1.48494 * 109.47234 * 84.97697 * 9 7 5 11 11 H 1.48500 * 109.46951 * 204.97672 * 9 7 5 12 12 H 1.48504 * 109.46919 * 324.97362 * 9 7 5 13 13 C 1.46504 * 120.00005 * 84.50157 * 4 3 2 14 14 C 1.50704 * 109.47262 * 270.00147 * 13 4 3 15 15 C 1.33325 * 125.95248 * 89.99646 * 14 13 4 16 16 N 1.32119 * 114.57912 * 179.97438 * 15 14 13 17 17 C 1.29684 * 116.86435 * 0.02562 * 16 15 14 18 18 N 1.38618 * 124.94842 * 179.97438 * 17 16 15 19 19 S 1.70969 * 110.10470 * 0.23524 * 17 16 15 20 20 H 1.09000 * 109.46944 * 300.00032 * 1 2 3 21 21 H 1.09000 * 109.47223 * 59.99517 * 1 2 3 22 22 H 1.08998 * 109.47272 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46944 * 239.99968 * 2 1 3 24 24 H 1.08998 * 109.46986 * 120.00007 * 2 1 3 25 25 H 1.09003 * 109.46705 * 60.00105 * 3 2 1 26 26 H 1.08998 * 109.47157 * 299.99902 * 3 2 1 27 27 H 0.96990 * 120.00558 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47062 * 149.99728 * 13 4 3 29 29 H 1.08994 * 109.47016 * 30.00068 * 13 4 3 30 30 H 1.08004 * 122.70568 * 0.02822 * 15 14 13 31 31 H 0.96994 * 119.99445 * 0.02562 * 18 17 16 32 32 H 0.96995 * 119.99935 * 179.74134 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5562 1.1813 6 1 5.2542 1.7353 1.1732 7 6 3.5140 1.4414 2.3886 8 7 2.3323 0.8632 2.4294 9 14 4.2824 2.1074 3.9556 10 1 3.9728 3.5542 4.0826 11 1 3.7307 1.3786 5.1260 12 1 5.7545 1.9188 3.9040 13 6 4.2380 1.3207 -1.2620 14 6 4.4893 -0.1353 -1.5586 15 6 3.6853 -0.9434 -2.2502 16 7 4.1271 -2.1822 -2.3758 17 6 5.2668 -2.4569 -1.8216 18 7 5.8845 -3.6976 -1.8489 19 16 5.8932 -1.0679 -1.0461 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 1.8606 0.7827 3.2730 28 1 5.1904 1.8447 -1.1812 29 1 3.6493 1.7593 -2.0676 30 1 2.7489 -0.6117 -2.6742 31 1 5.4616 -4.4398 -2.3083 32 1 6.7415 -3.8223 -1.4121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308574744.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:10 Heat of formation + Delta-G solvation = 53.125983 kcal Electronic energy + Delta-G solvation = -15639.811450 eV Core-core repulsion = 13148.387773 eV Total energy + Delta-G solvation = -2491.423677 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.36928 -38.06987 -35.47325 -33.68239 -33.42092 -30.47037 -27.33444 -26.87045 -24.87921 -23.20632 -21.74252 -20.89504 -19.46668 -18.62629 -17.11302 -16.77374 -16.58636 -15.74333 -15.38665 -15.29878 -15.19003 -14.72664 -14.17917 -13.50774 -13.28442 -13.16435 -12.80756 -12.48767 -12.26357 -12.05791 -11.87639 -11.81160 -11.54841 -11.37790 -11.01630 -10.48136 -10.23977 -9.91332 -8.79384 -8.53508 -7.70122 -5.08354 0.26203 0.43958 1.09860 1.50268 1.53003 1.58537 2.18558 2.58731 2.70205 3.37587 3.84493 4.15732 4.48411 4.53899 4.61401 4.72258 4.93372 4.94281 5.02886 5.16697 5.30475 5.40561 5.51248 5.61065 5.66602 5.96855 6.13520 6.30623 6.43351 6.51836 7.25190 7.28213 7.96556 8.36815 9.27045 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.009348 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.635845 B = 2994.596637 C = 3620.620679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.119 4.119 3 C 0.178 3.822 4 N -0.598 5.598 5 C -0.247 4.247 6 H 0.070 0.930 7 C -0.050 4.050 8 N -0.911 5.911 9 Si 0.955 3.045 10 H -0.289 1.289 11 H -0.302 1.302 12 H -0.276 1.276 13 C 0.219 3.781 14 C -0.246 4.246 15 C 0.055 3.945 16 N -0.574 5.574 17 C 0.289 3.711 18 N -0.809 5.809 19 S 0.094 5.906 20 H 0.038 0.962 21 H 0.053 0.947 22 H 0.040 0.960 23 H 0.032 0.968 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.022 0.978 27 H 0.242 0.758 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.415 0.585 32 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.103 -4.521 -8.040 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C 0.053 3.947 4 N -0.317 5.317 5 C -0.377 4.377 6 H 0.088 0.912 7 C -0.245 4.245 8 N -0.558 5.558 9 Si 0.785 3.215 10 H -0.216 1.216 11 H -0.229 1.229 12 H -0.201 1.201 13 C 0.090 3.910 14 C -0.372 4.372 15 C -0.094 4.094 16 N -0.301 5.301 17 C -0.085 4.085 18 N -0.364 5.364 19 S 0.341 5.659 20 H 0.057 0.943 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.186 0.814 31 H 0.247 0.753 32 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.614 -4.698 -7.601 10.553 hybrid contribution -0.516 -0.111 0.825 0.979 sum 5.098 -4.809 -6.776 9.748 Atomic orbital electron populations 1.21531 0.96779 0.99920 1.00407 1.22004 0.94383 0.99649 0.99849 1.20801 0.81512 0.94797 0.97589 1.44608 1.02308 1.82863 1.01924 1.19459 0.93042 1.40795 0.84442 0.91178 1.25392 0.98225 1.01139 0.99735 1.70326 1.15899 1.45222 1.24343 0.85457 0.77978 0.77856 0.80174 1.21619 1.22883 1.20104 1.19437 0.96524 0.86566 0.88480 1.26876 0.98121 1.04978 1.07243 1.21134 1.00525 0.86713 1.01071 1.66340 1.13334 1.21045 1.29395 1.23756 0.93715 0.94062 0.96935 1.41360 1.25353 1.06293 1.63415 1.83757 1.24725 1.02312 1.55127 0.94318 0.92795 0.94085 0.94949 0.92769 0.92112 0.96012 0.94773 0.92274 0.90038 0.81380 0.75296 0.74414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.91 71.98 0.71 -4.27 16 2 C -0.12 -5.44 5.57 30.60 0.17 -5.27 16 3 C 0.18 8.32 4.92 86.38 0.42 8.75 16 4 N -0.60 -28.34 2.52 -706.35 -1.78 -30.12 16 5 C -0.25 -12.90 9.74 84.03 0.82 -12.09 16 6 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 7 C -0.05 -2.67 5.02 84.86 0.43 -2.24 16 8 N -0.91 -50.72 8.25 21.65 0.18 -50.54 16 9 Si 0.96 44.28 29.60 68.60 2.03 46.31 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.22 8.58 6.23 85.63 0.53 9.11 16 14 C -0.25 -9.43 5.88 24.58 0.14 -9.28 16 15 C 0.05 2.05 9.21 83.54 0.77 2.82 16 16 N -0.57 -21.31 10.60 -202.02 -2.14 -23.45 16 17 C 0.29 9.40 8.58 179.32 1.54 10.94 16 18 N -0.81 -18.13 9.08 -59.72 -0.54 -18.67 16 19 S 0.09 3.25 23.22 -56.49 -1.31 1.94 16 20 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 23 H 0.03 1.42 4.88 -2.39 -0.01 1.41 16 24 H 0.05 2.96 6.22 -2.39 -0.01 2.95 16 25 H 0.06 3.23 5.88 -2.39 -0.01 3.22 16 26 H 0.02 0.92 7.97 -2.39 -0.02 0.90 16 27 H 0.24 13.43 8.31 -92.72 -0.77 12.66 16 28 H 0.06 2.24 8.02 -2.39 -0.02 2.22 16 29 H 0.08 2.82 7.95 -2.39 -0.02 2.80 16 30 H 0.17 5.95 7.40 -2.91 -0.02 5.93 16 31 H 0.41 7.89 8.95 -92.71 -0.83 7.06 16 32 H 0.42 6.98 8.95 -92.71 -0.83 6.15 16 Total: -1.00 -61.69 276.46 1.46 -60.23 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -0.51 Total: 15.82 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.54 Total: -1.52 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -4.29 Total: -122.78 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.31 Total: 1.94 kcal Total: -61.69 1.46 -60.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308574744.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.352 kcal (2) G-P(sol) polarization free energy of solvation -61.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds