Wall clock time and date at job start Mon Mar 30 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47020 * 2 1 4 4 C 1.50704 * 109.46793 * 119.99582 * 2 1 3 5 5 H 1.08000 * 119.99549 * 119.99988 * 4 2 1 6 6 C 1.37877 * 120.00170 * 300.00140 * 4 2 1 7 7 N 1.31507 * 120.00035 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99771 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47472 * 59.99851 * 8 6 4 10 10 H 1.48497 * 109.47379 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47433 * 299.99992 * 8 6 4 12 12 N 1.46897 * 109.47079 * 239.99950 * 2 1 3 13 13 C 1.46898 * 111.00255 * 84.99869 * 12 2 1 14 14 C 1.52996 * 109.47269 * 179.97438 * 13 12 2 15 15 H 1.09007 * 109.46947 * 60.00223 * 14 13 12 16 16 O 1.42900 * 109.47193 * 300.00238 * 14 13 12 17 17 C 1.50702 * 109.47371 * 179.97438 * 14 13 12 18 18 C 1.33388 * 125.20547 * 265.00963 * 17 14 13 19 19 C 1.38421 * 114.92066 * 180.29144 * 18 17 14 20 20 C 1.33395 * 114.92147 * 359.48238 * 19 18 17 21 21 S 1.75885 * 125.19995 * 85.02318 * 17 14 13 22 22 H 1.08998 * 109.47099 * 60.00059 * 1 2 3 23 23 H 1.09000 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47485 * 300.00456 * 1 2 3 25 25 H 0.97003 * 120.00033 * 179.97438 * 7 6 4 26 26 H 1.00900 * 111.00081 * 208.95681 * 12 2 1 27 27 H 1.09007 * 109.46954 * 59.99840 * 13 12 2 28 28 H 1.08997 * 109.46871 * 299.99980 * 13 12 2 29 29 H 0.96698 * 114.00191 * 299.99871 * 16 14 13 30 30 H 1.08002 * 122.53671 * 0.02562 * 18 17 14 31 31 H 1.08001 * 122.54223 * 179.72513 * 19 18 17 32 32 H 1.07998 * 125.20353 * 180.21324 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.8074 -1.1189 4.0079 10 1 1.8278 -0.4191 5.2205 11 1 1.8280 -2.5197 4.0083 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5962 -0.5330 -3.5741 15 1 1.9201 -1.3568 -3.8029 16 8 3.9013 -1.0487 -3.3042 17 6 2.6600 0.4056 -4.7515 18 6 1.7054 0.5509 -5.6717 19 6 1.9896 1.4701 -6.6668 20 6 3.1705 2.0792 -6.5488 21 16 4.0050 1.4766 -5.1226 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7088 1.1615 3.4844 26 1 2.9173 -1.1205 -1.0287 27 1 2.7589 1.0462 -2.1182 28 1 1.0871 0.6162 -2.5525 29 1 4.5564 -0.3698 -3.0922 30 1 0.7825 -0.0094 -5.6448 31 1 1.3053 1.6813 -7.4753 32 1 3.5571 2.8248 -7.2278 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308599891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:59 Heat of formation + Delta-G solvation = -20.276341 kcal Electronic energy + Delta-G solvation = -14895.773245 eV Core-core repulsion = 12368.873853 eV Total energy + Delta-G solvation = -2526.899392 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.54823 -36.97000 -35.27142 -32.50670 -30.82087 -28.74356 -26.24457 -25.13970 -23.61811 -21.69316 -19.88672 -19.37923 -17.81847 -16.74624 -15.85152 -15.33963 -15.17111 -14.67140 -13.91702 -13.62704 -13.41606 -12.87618 -12.69083 -12.54820 -12.12628 -11.65874 -11.53774 -11.14746 -10.93654 -10.81491 -10.67128 -10.38353 -10.23707 -10.12550 -9.81482 -8.86392 -8.64994 -8.52769 -8.46679 -7.29926 -6.02488 -4.09035 0.93026 1.54469 1.92956 2.68577 3.32113 3.36239 3.39507 4.39044 4.53162 4.58944 4.96667 5.28643 5.32805 5.38001 5.46156 5.52383 5.72669 6.00267 6.17176 6.22263 6.29419 6.42916 6.86641 7.12557 7.21649 7.47621 7.64045 7.78231 7.89312 8.27065 8.37760 8.66607 9.01523 9.56960 11.03875 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.045801 B = 0.004873 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.195530 B = 5744.496803 C = 5928.112957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.684 5.684 13 C 0.037 3.963 14 C 0.178 3.822 15 H 0.122 0.878 16 O -0.547 6.547 17 C -0.195 4.195 18 C -0.139 4.139 19 C -0.131 4.131 20 C -0.220 4.220 21 S 0.100 5.900 22 H 0.003 0.997 23 H 0.032 0.968 24 H 0.081 0.919 25 H 0.261 0.739 26 H 0.338 0.662 27 H 0.022 0.978 28 H 0.075 0.925 29 H 0.368 0.632 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 2.402 -16.117 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.316 5.316 13 C -0.094 4.094 14 C 0.116 3.884 15 H 0.140 0.860 16 O -0.352 6.352 17 C -0.313 4.313 18 C -0.169 4.169 19 C -0.162 4.162 20 C -0.356 4.356 21 S 0.363 5.637 22 H 0.022 0.978 23 H 0.051 0.949 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.156 0.844 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.215 0.785 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.148 2.024 -15.583 16.253 hybrid contribution -0.162 0.570 0.405 0.718 sum 3.985 2.594 -15.179 15.906 Atomic orbital electron populations 1.21721 0.97881 0.99383 0.99318 1.19115 0.92640 0.92275 0.85550 0.98262 1.21229 1.31544 1.12559 0.90402 0.92175 1.24918 0.95028 0.94986 0.99057 1.69888 1.36621 1.22874 1.23582 0.86564 0.79090 0.79797 0.81978 1.20309 1.21314 1.20149 1.60658 1.32820 1.32450 1.05679 1.22557 1.00734 0.94246 0.91824 1.20591 0.85194 0.94066 0.88539 0.86002 1.86642 1.19408 1.37357 1.91759 1.25643 0.98612 1.04008 1.03067 1.20101 1.00654 1.01342 0.94780 1.20176 0.97267 0.98151 1.00615 1.25577 0.99860 1.07411 1.02724 1.84164 1.20834 1.35995 1.22692 0.97792 0.94886 0.90088 0.92871 0.84430 0.95979 0.90661 0.78488 0.84036 0.84337 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 2 C 0.21 5.42 2.60 -68.86 -0.18 5.24 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.37 8.59 -34.44 -0.30 -14.67 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.68 -14.76 6.30 -107.95 -0.68 -15.44 16 13 C 0.04 0.67 5.17 -3.83 -0.02 0.65 16 14 C 0.18 2.66 3.68 -27.88 -0.10 2.56 16 15 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 16 O -0.55 -8.33 12.58 -35.23 -0.44 -8.78 16 17 C -0.20 -2.60 5.52 -36.00 -0.20 -2.80 16 18 C -0.14 -1.68 10.05 -41.21 -0.41 -2.10 16 19 C -0.13 -1.40 10.18 -41.21 -0.42 -1.82 16 20 C -0.22 -2.30 11.23 29.04 0.33 -1.97 16 21 S 0.10 1.17 22.53 -107.50 -2.42 -1.25 16 22 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 23 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.34 7.26 7.61 -39.29 -0.30 6.97 16 27 H 0.02 0.41 8.06 -51.92 -0.42 -0.01 16 28 H 0.08 1.38 7.44 -51.93 -0.39 0.99 16 29 H 0.37 4.74 8.40 45.56 0.38 5.12 16 30 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 284.30 15.07 4.28 4.28 Total: -1.00 -29.51 284.30 -8.19 -37.70 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.48 Total: 8.16 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -1.06 Total: -16.07 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.05 Total: -40.40 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.44 Total: -8.78 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.42 Total: -1.25 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.51 -8.19 -37.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308599891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.424 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds