Wall clock time and date at job start Mon Mar 30 2020 03:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47020 * 2 1 4 4 C 1.50704 * 109.46793 * 119.99582 * 2 1 3 5 5 H 1.08000 * 119.99549 * 119.99988 * 4 2 1 6 6 C 1.37877 * 120.00170 * 300.00140 * 4 2 1 7 7 N 1.31507 * 120.00035 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99771 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47472 * 59.99851 * 8 6 4 10 10 H 1.48497 * 109.47379 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47433 * 299.99992 * 8 6 4 12 12 N 1.46897 * 109.47079 * 239.99950 * 2 1 3 13 13 C 1.46898 * 111.00255 * 84.99869 * 12 2 1 14 14 C 1.52996 * 109.47269 * 179.97438 * 13 12 2 15 15 H 1.09007 * 109.46947 * 60.00223 * 14 13 12 16 16 O 1.42900 * 109.47193 * 300.00238 * 14 13 12 17 17 C 1.50702 * 109.47371 * 179.97438 * 14 13 12 18 18 C 1.33388 * 125.20547 * 265.00963 * 17 14 13 19 19 C 1.38421 * 114.92066 * 180.29144 * 18 17 14 20 20 C 1.33395 * 114.92147 * 359.48238 * 19 18 17 21 21 S 1.75885 * 125.19995 * 85.02318 * 17 14 13 22 22 H 1.08998 * 109.47099 * 60.00059 * 1 2 3 23 23 H 1.09000 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47485 * 300.00456 * 1 2 3 25 25 H 0.97003 * 120.00033 * 179.97438 * 7 6 4 26 26 H 1.00900 * 111.00081 * 208.95681 * 12 2 1 27 27 H 1.09007 * 109.46954 * 59.99840 * 13 12 2 28 28 H 1.08997 * 109.46871 * 299.99980 * 13 12 2 29 29 H 0.96698 * 114.00191 * 299.99871 * 16 14 13 30 30 H 1.08002 * 122.53671 * 0.02562 * 18 17 14 31 31 H 1.08001 * 122.54223 * 179.72513 * 19 18 17 32 32 H 1.07998 * 125.20353 * 180.21324 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.8074 -1.1189 4.0079 10 1 1.8278 -0.4191 5.2205 11 1 1.8280 -2.5197 4.0083 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5962 -0.5330 -3.5741 15 1 1.9201 -1.3568 -3.8029 16 8 3.9013 -1.0487 -3.3042 17 6 2.6600 0.4056 -4.7515 18 6 1.7054 0.5509 -5.6717 19 6 1.9896 1.4701 -6.6668 20 6 3.1705 2.0792 -6.5488 21 16 4.0050 1.4766 -5.1226 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7088 1.1615 3.4844 26 1 2.9173 -1.1205 -1.0287 27 1 2.7589 1.0462 -2.1182 28 1 1.0871 0.6162 -2.5525 29 1 4.5564 -0.3698 -3.0922 30 1 0.7825 -0.0094 -5.6448 31 1 1.3053 1.6813 -7.4753 32 1 3.5571 2.8248 -7.2278 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308599891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:58 Heat of formation + Delta-G solvation = -41.291848 kcal Electronic energy + Delta-G solvation = -14896.684546 eV Core-core repulsion = 12368.873853 eV Total energy + Delta-G solvation = -2527.810693 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68588 -38.10806 -36.98773 -34.41856 -32.12167 -30.36031 -27.72907 -27.09280 -24.75508 -22.97696 -21.78239 -20.34106 -18.86986 -18.67069 -17.13867 -16.79840 -16.54650 -16.20490 -15.41782 -15.18819 -14.80239 -14.42800 -13.85404 -13.61189 -13.43207 -13.28277 -12.94738 -12.80402 -12.71185 -12.40805 -12.28397 -12.18688 -12.04891 -11.68108 -11.25888 -10.90072 -10.57828 -9.62377 -9.41969 -9.10523 -8.14130 -6.28699 0.02596 0.64314 1.05636 1.42969 1.44951 1.52698 1.81417 2.41519 3.14116 3.31772 3.40377 4.00089 4.06242 4.18920 4.24436 4.60942 4.64887 4.70048 4.81097 4.92861 5.05424 5.19170 5.19906 5.35232 5.44201 5.55211 5.65069 5.83669 6.20550 6.43154 6.52921 6.74136 6.97609 7.41812 8.91428 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.045801 B = 0.004873 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.195530 B = 5744.496803 C = 5928.112957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.032 1.032 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.682 5.682 13 C 0.042 3.958 14 C 0.192 3.808 15 H 0.120 0.880 16 O -0.557 6.557 17 C -0.225 4.225 18 C -0.135 4.135 19 C -0.141 4.141 20 C -0.210 4.210 21 S 0.090 5.910 22 H 0.022 0.978 23 H 0.029 0.971 24 H 0.057 0.943 25 H 0.263 0.737 26 H 0.337 0.663 27 H 0.016 0.984 28 H 0.071 0.929 29 H 0.377 0.623 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 2.323 -17.256 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.014 1.014 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.313 5.313 13 C -0.088 4.088 14 C 0.131 3.869 15 H 0.138 0.862 16 O -0.363 6.363 17 C -0.343 4.343 18 C -0.166 4.166 19 C -0.171 4.171 20 C -0.345 4.345 21 S 0.353 5.647 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.155 0.845 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.226 0.774 30 H 0.170 0.830 31 H 0.184 0.816 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.475 1.945 -16.741 17.438 hybrid contribution -0.259 0.654 0.661 0.966 sum 4.216 2.599 -16.080 16.825 Atomic orbital electron populations 1.21547 0.97619 0.98951 0.99074 1.18933 0.92845 0.90689 0.86857 1.01426 1.21551 1.31897 1.12786 0.91612 0.92311 1.25736 0.95095 0.95646 1.02056 1.70015 1.37376 1.24011 1.24302 0.85523 0.78746 0.78645 0.78176 1.19556 1.20826 1.19642 1.60562 1.32799 1.32795 1.05177 1.22573 1.00592 0.93878 0.91789 1.20271 0.84908 0.93922 0.87814 0.86235 1.86607 1.19700 1.38161 1.91836 1.25415 1.00174 1.05322 1.03403 1.20424 1.00546 1.01099 0.94505 1.20462 0.97927 0.97729 1.01007 1.25998 0.99380 1.07180 1.01951 1.84182 1.20721 1.35919 1.23868 0.95910 0.95213 0.92409 0.92772 0.84473 0.96541 0.91080 0.77442 0.83035 0.81626 0.79222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.77 9.19 71.98 0.66 -5.11 16 2 C 0.22 11.21 2.60 44.17 0.11 11.33 16 3 H -0.03 -1.83 7.80 -2.39 -0.02 -1.84 16 4 C -0.54 -30.19 8.59 25.60 0.22 -29.97 16 5 H 0.06 3.22 7.62 -2.91 -0.02 3.20 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -53.29 11.32 21.45 0.24 -53.05 16 8 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 N -0.68 -29.62 6.30 -495.45 -3.12 -32.74 16 13 C 0.04 1.52 5.17 86.30 0.45 1.96 16 14 C 0.19 5.68 3.68 29.85 0.11 5.79 16 15 H 0.12 3.55 8.14 -2.38 -0.02 3.53 16 16 O -0.56 -16.74 12.58 -148.98 -1.87 -18.61 16 17 C -0.23 -5.77 5.52 24.59 0.14 -5.63 16 18 C -0.14 -3.02 10.05 21.22 0.21 -2.81 16 19 C -0.14 -2.61 10.18 21.22 0.22 -2.39 16 20 C -0.21 -3.79 11.23 66.72 0.75 -3.04 16 21 S 0.09 1.99 22.53 -56.49 -1.27 0.72 16 22 H 0.02 1.02 7.45 -2.39 -0.02 1.00 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 25 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.34 14.62 7.61 -89.69 -0.68 13.94 16 27 H 0.02 0.61 8.06 -2.38 -0.02 0.59 16 28 H 0.07 2.60 7.44 -2.39 -0.02 2.58 16 29 H 0.38 9.63 8.40 -74.06 -0.62 9.01 16 30 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -62.38 284.30 -0.86 -63.24 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -0.17 Total: 23.30 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 3.32 Total: -28.64 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -2.88 Total: -85.80 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -1.87 Total: -18.61 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.27 Total: 0.72 kcal Total: -62.38 -0.86 -63.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308599891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.948 kcal (2) G-P(sol) polarization free energy of solvation -62.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds