Wall clock time and date at job start Mon Mar 30 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47372 * 2 1 4 4 C 1.50700 * 109.47303 * 239.99927 * 2 1 3 5 5 H 1.08004 * 119.99741 * 275.00407 * 4 2 1 6 6 C 1.37880 * 120.00039 * 95.00019 * 4 2 1 7 7 N 1.31515 * 119.99935 * 184.91814 * 6 4 2 8 8 Si 1.86799 * 119.99799 * 4.91375 * 6 4 2 9 9 H 1.48496 * 109.46940 * 84.83231 * 8 6 4 10 10 H 1.48506 * 109.46739 * 204.82992 * 8 6 4 11 11 H 1.48495 * 109.47408 * 324.83157 * 8 6 4 12 12 N 1.46896 * 109.47307 * 119.99843 * 2 1 3 13 13 C 1.46903 * 110.99962 * 275.00092 * 12 2 1 14 14 C 1.53006 * 109.47182 * 179.97438 * 13 12 2 15 15 H 1.09000 * 109.47096 * 305.00350 * 14 13 12 16 16 O 1.42905 * 109.46854 * 65.00055 * 14 13 12 17 17 C 1.50697 * 109.47334 * 185.00036 * 14 13 12 18 18 C 1.33389 * 125.20248 * 100.00020 * 17 14 13 19 19 C 1.38426 * 114.91987 * 179.97438 * 18 17 14 20 20 C 1.33395 * 114.92136 * 359.97438 * 19 18 17 21 21 S 1.75887 * 109.59273 * 359.75836 * 20 19 18 22 22 H 1.09004 * 109.46969 * 175.05302 * 1 2 3 23 23 H 1.09003 * 109.47161 * 295.05380 * 1 2 3 24 24 H 1.09000 * 109.47153 * 55.05565 * 1 2 3 25 25 H 0.96993 * 120.00218 * 180.02562 * 7 6 4 26 26 H 1.00896 * 111.00315 * 151.04628 * 12 2 1 27 27 H 1.08997 * 109.47028 * 60.00195 * 13 12 2 28 28 H 1.09000 * 109.47456 * 299.99674 * 13 12 2 29 29 H 0.96703 * 113.99421 * 59.99865 * 16 14 13 30 30 H 1.07992 * 122.54020 * 0.02562 * 18 17 14 31 31 H 1.07995 * 122.53894 * 180.02562 * 19 18 17 32 32 H 1.07995 * 125.20208 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3581 7 7 2.7060 -0.6132 -3.4622 8 14 2.3135 1.8791 -2.3174 9 1 3.5990 2.3949 -1.7821 10 1 2.1058 2.3990 -3.6929 11 1 1.1985 2.3274 -1.4451 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2227 2.3468 14 6 2.5951 -0.5330 3.5745 15 1 1.9692 -1.4080 3.7501 16 8 3.9434 -0.9494 3.3488 17 6 2.5436 0.3713 4.7789 18 6 1.5892 0.3574 5.7107 19 6 1.7534 1.2822 6.7275 20 6 2.8413 2.0467 6.6218 21 16 3.7373 1.6007 5.1754 22 1 -0.3633 -1.0239 -0.0886 23 1 -0.3634 0.4352 0.9310 24 1 -0.3633 0.5886 -0.8424 25 1 2.9371 -0.1050 -4.2554 26 1 2.9173 -1.1204 1.0287 27 1 1.0871 0.6163 2.5525 28 1 2.7589 1.0463 2.1182 29 1 4.5578 -0.2208 3.1850 30 1 0.7524 -0.3243 5.6749 31 1 1.0541 1.3769 7.5450 32 1 3.1298 2.8189 7.3195 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308599892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:00 Heat of formation + Delta-G solvation = -20.406942 kcal Electronic energy + Delta-G solvation = -14968.854059 eV Core-core repulsion = 12441.949004 eV Total energy + Delta-G solvation = -2526.905055 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.61038 -37.03977 -35.42708 -32.43822 -31.04932 -29.34212 -26.43202 -25.19062 -23.66028 -21.76232 -19.85539 -19.39275 -17.87002 -17.12341 -16.01020 -15.54776 -15.38659 -14.55795 -13.92576 -13.73704 -13.49439 -12.90775 -12.78283 -12.57991 -12.27145 -12.14959 -11.82760 -11.34250 -11.04659 -10.96135 -10.79880 -10.65396 -10.38463 -10.07299 -9.77425 -9.04687 -8.75929 -8.59472 -8.58208 -7.47687 -6.13145 -4.13830 0.87159 1.49176 1.87507 2.62826 3.22320 3.31725 3.33439 4.35652 4.46743 4.49768 4.91216 5.13203 5.26200 5.32699 5.38441 5.45768 5.59415 5.92273 6.03045 6.12845 6.20705 6.36135 6.40962 6.63743 6.80415 6.86021 7.38780 7.60246 7.61171 7.91723 8.39394 8.63628 8.96868 9.50703 10.99957 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.005605 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.843577 B = 4994.128173 C = 5093.302091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.179 3.821 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.081 0.919 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.679 5.679 13 C 0.032 3.968 14 C 0.178 3.822 15 H 0.125 0.875 16 O -0.547 6.547 17 C -0.197 4.197 18 C -0.137 4.137 19 C -0.132 4.132 20 C -0.219 4.219 21 S 0.099 5.901 22 H 0.052 0.948 23 H 0.019 0.981 24 H 0.040 0.960 25 H 0.265 0.735 26 H 0.347 0.653 27 H 0.075 0.925 28 H 0.023 0.977 29 H 0.369 0.631 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 5.900 18.893 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.099 0.901 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.191 1.191 12 N -0.312 5.312 13 C -0.098 4.098 14 C 0.116 3.884 15 H 0.142 0.858 16 O -0.351 6.351 17 C -0.315 4.315 18 C -0.167 4.167 19 C -0.163 4.163 20 C -0.354 4.354 21 S 0.362 5.638 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.167 0.833 27 H 0.093 0.907 28 H 0.041 0.959 29 H 0.216 0.784 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.647 5.599 18.278 19.127 hybrid contribution -0.395 1.823 0.340 1.896 sum 0.252 7.422 18.618 20.044 Atomic orbital electron populations 1.21848 0.98080 1.00765 0.97683 1.19579 0.92464 0.92439 0.88377 0.97955 1.21075 1.43648 0.95965 0.94977 0.90133 1.25024 0.94403 0.98112 0.95341 1.69897 1.45946 1.35784 1.01646 0.86905 0.78935 0.86679 0.77272 1.20365 1.21325 1.19063 1.60653 1.33745 1.31994 1.04853 1.22641 1.00683 0.94421 0.92090 1.20580 0.84235 0.95555 0.88015 0.85783 1.86661 1.18025 1.36942 1.93481 1.25620 0.99988 1.02955 1.02920 1.20117 1.00620 1.01572 0.94363 1.20181 0.98630 0.96958 1.00499 1.25587 1.00631 1.06722 1.02491 1.84210 1.26914 1.31955 1.20720 0.92885 0.96165 0.94054 0.92538 0.83320 0.90688 0.95925 0.78413 0.84007 0.84307 0.82004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.42 37.16 0.35 -2.41 16 2 C 0.18 4.25 2.26 -68.87 -0.16 4.09 16 3 H 0.00 0.07 4.95 -51.93 -0.26 -0.19 16 4 C -0.52 -14.44 8.84 -34.44 -0.30 -14.75 16 5 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 8 Si 0.87 21.43 26.99 -169.99 -4.59 16.85 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.30 6.82 56.52 0.39 -5.91 16 12 N -0.68 -13.98 6.30 -107.95 -0.68 -14.66 16 13 C 0.03 0.55 5.14 -3.82 -0.02 0.53 16 14 C 0.18 2.56 3.65 -27.88 -0.10 2.46 16 15 H 0.12 1.80 8.12 -51.93 -0.42 1.38 16 16 O -0.55 -8.17 12.80 -35.23 -0.45 -8.63 16 17 C -0.20 -2.51 5.48 -36.00 -0.20 -2.71 16 18 C -0.14 -1.58 10.04 -41.21 -0.41 -1.99 16 19 C -0.13 -1.34 10.18 -41.21 -0.42 -1.76 16 20 C -0.22 -2.19 11.23 29.04 0.33 -1.86 16 21 S 0.10 1.12 22.63 -107.50 -2.43 -1.31 16 22 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.02 0.38 7.35 -51.93 -0.38 0.00 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.35 7.41 7.91 -39.29 -0.31 7.10 16 27 H 0.07 1.25 7.36 -51.93 -0.38 0.87 16 28 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 29 H 0.37 4.65 8.45 45.56 0.38 5.03 16 30 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 284.44 15.07 4.29 4.29 Total: -1.00 -30.32 284.44 -7.60 -37.92 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -3.48 Total: 8.27 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -1.03 Total: -16.39 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.09 Total: -41.00 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.45 Total: -8.63 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.59 Total: 16.85 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.43 Total: -1.31 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.32 -7.60 -37.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308599892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.510 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds