Wall clock time and date at job start Mon Mar 30 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47372 * 2 1 4 4 C 1.50700 * 109.47303 * 239.99927 * 2 1 3 5 5 H 1.08004 * 119.99741 * 275.00407 * 4 2 1 6 6 C 1.37880 * 120.00039 * 95.00019 * 4 2 1 7 7 N 1.31515 * 119.99935 * 184.91814 * 6 4 2 8 8 Si 1.86799 * 119.99799 * 4.91375 * 6 4 2 9 9 H 1.48496 * 109.46940 * 84.83231 * 8 6 4 10 10 H 1.48506 * 109.46739 * 204.82992 * 8 6 4 11 11 H 1.48495 * 109.47408 * 324.83157 * 8 6 4 12 12 N 1.46896 * 109.47307 * 119.99843 * 2 1 3 13 13 C 1.46903 * 110.99962 * 275.00092 * 12 2 1 14 14 C 1.53006 * 109.47182 * 179.97438 * 13 12 2 15 15 H 1.09000 * 109.47096 * 305.00350 * 14 13 12 16 16 O 1.42905 * 109.46854 * 65.00055 * 14 13 12 17 17 C 1.50697 * 109.47334 * 185.00036 * 14 13 12 18 18 C 1.33389 * 125.20248 * 100.00020 * 17 14 13 19 19 C 1.38426 * 114.91987 * 179.97438 * 18 17 14 20 20 C 1.33395 * 114.92136 * 359.97438 * 19 18 17 21 21 S 1.75887 * 109.59273 * 359.75836 * 20 19 18 22 22 H 1.09004 * 109.46969 * 175.05302 * 1 2 3 23 23 H 1.09003 * 109.47161 * 295.05380 * 1 2 3 24 24 H 1.09000 * 109.47153 * 55.05565 * 1 2 3 25 25 H 0.96993 * 120.00218 * 180.02562 * 7 6 4 26 26 H 1.00896 * 111.00315 * 151.04628 * 12 2 1 27 27 H 1.08997 * 109.47028 * 60.00195 * 13 12 2 28 28 H 1.09000 * 109.47456 * 299.99674 * 13 12 2 29 29 H 0.96703 * 113.99421 * 59.99865 * 16 14 13 30 30 H 1.07992 * 122.54020 * 0.02562 * 18 17 14 31 31 H 1.07995 * 122.53894 * 180.02562 * 19 18 17 32 32 H 1.07995 * 125.20208 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3581 7 7 2.7060 -0.6132 -3.4622 8 14 2.3135 1.8791 -2.3174 9 1 3.5990 2.3949 -1.7821 10 1 2.1058 2.3990 -3.6929 11 1 1.1985 2.3274 -1.4451 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2227 2.3468 14 6 2.5951 -0.5330 3.5745 15 1 1.9692 -1.4080 3.7501 16 8 3.9434 -0.9494 3.3488 17 6 2.5436 0.3713 4.7789 18 6 1.5892 0.3574 5.7107 19 6 1.7534 1.2822 6.7275 20 6 2.8413 2.0467 6.6218 21 16 3.7373 1.6007 5.1754 22 1 -0.3633 -1.0239 -0.0886 23 1 -0.3634 0.4352 0.9310 24 1 -0.3633 0.5886 -0.8424 25 1 2.9371 -0.1050 -4.2554 26 1 2.9173 -1.1204 1.0287 27 1 1.0871 0.6163 2.5525 28 1 2.7589 1.0463 2.1182 29 1 4.5578 -0.2208 3.1850 30 1 0.7524 -0.3243 5.6749 31 1 1.0541 1.3769 7.5450 32 1 3.1298 2.8189 7.3195 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308599892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:00 Heat of formation + Delta-G solvation = -43.235689 kcal Electronic energy + Delta-G solvation = -14969.843988 eV Core-core repulsion = 12441.949004 eV Total energy + Delta-G solvation = -2527.894984 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.68648 -38.12533 -37.02257 -34.43504 -32.39716 -30.73743 -27.74199 -27.11474 -24.71844 -22.96507 -21.60999 -20.33206 -19.20265 -18.82303 -17.38401 -16.76662 -16.56017 -15.98358 -15.65841 -15.03659 -14.81746 -14.60567 -14.05179 -13.79868 -13.61014 -13.34762 -12.99834 -12.84238 -12.71825 -12.64970 -12.37316 -12.15255 -11.83616 -11.66477 -11.30953 -11.03559 -10.76897 -9.63343 -9.42463 -9.13743 -8.32824 -6.38606 0.02666 0.64601 1.05788 1.29875 1.32150 1.42817 1.81699 2.29843 2.98871 3.30502 3.42152 3.94561 4.05035 4.18075 4.24646 4.47040 4.60870 4.68061 4.70042 4.86958 4.90382 4.98766 5.09435 5.20395 5.35583 5.48694 5.55812 5.68166 6.00214 6.50597 6.54603 6.66266 6.81691 7.30544 8.84087 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.005605 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.843577 B = 4994.128173 C = 5093.302091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.182 3.818 3 H 0.003 0.997 4 C -0.522 4.522 5 H 0.036 0.964 6 C 0.017 3.983 7 N -0.944 5.944 8 Si 0.940 3.060 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.248 1.248 12 N -0.682 5.682 13 C 0.036 3.964 14 C 0.189 3.811 15 H 0.120 0.880 16 O -0.561 6.561 17 C -0.224 4.224 18 C -0.132 4.132 19 C -0.141 4.141 20 C -0.209 4.209 21 S 0.086 5.914 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.037 0.963 25 H 0.267 0.733 26 H 0.340 0.660 27 H 0.081 0.919 28 H 0.022 0.978 29 H 0.378 0.622 30 H 0.153 0.847 31 H 0.166 0.834 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 8.019 21.234 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 H 0.021 0.979 4 C -0.561 4.561 5 H 0.054 0.946 6 C -0.181 4.181 7 N -0.583 5.583 8 Si 0.764 3.236 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.172 1.172 12 N -0.314 5.314 13 C -0.094 4.094 14 C 0.128 3.872 15 H 0.138 0.862 16 O -0.367 6.367 17 C -0.342 4.342 18 C -0.163 4.163 19 C -0.171 4.171 20 C -0.345 4.345 21 S 0.349 5.651 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.158 0.842 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.226 0.774 30 H 0.171 0.829 31 H 0.183 0.817 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.012 7.719 20.647 22.042 hybrid contribution -0.181 1.086 -0.297 1.141 sum -0.193 8.805 20.349 22.174 Atomic orbital electron populations 1.21754 0.96599 1.00498 0.99110 1.19475 0.93558 0.91898 0.87764 0.97896 1.21281 1.43456 0.94256 0.97096 0.94557 1.25877 0.94070 1.03415 0.94734 1.70045 1.47720 1.37976 1.02603 0.85847 0.79816 0.80202 0.77715 1.19372 1.20988 1.17159 1.60565 1.33345 1.32693 1.04832 1.22693 1.01209 0.93952 0.91553 1.20315 0.83729 0.95446 0.87744 0.86200 1.86629 1.18549 1.37901 1.93576 1.25379 1.01536 1.04138 1.03148 1.20434 1.00269 1.01520 0.94068 1.20466 0.99273 0.96469 1.00877 1.25990 0.99887 1.06787 1.01788 1.84245 1.27124 1.31756 1.21977 0.93781 0.93162 0.94409 0.92365 0.84172 0.90055 0.95951 0.77401 0.82908 0.81654 0.79344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 9.42 71.98 0.68 -4.46 16 2 C 0.18 8.48 2.26 44.17 0.10 8.58 16 3 H 0.00 0.16 4.95 -2.38 -0.01 0.15 16 4 C -0.52 -29.76 8.84 25.60 0.23 -29.54 16 5 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 6 C 0.02 1.00 5.47 84.66 0.46 1.46 16 7 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 8 Si 0.94 43.78 26.99 68.60 1.85 45.63 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.25 -10.75 6.82 99.48 0.68 -10.07 16 12 N -0.68 -27.82 6.30 -495.44 -3.12 -30.94 16 13 C 0.04 1.17 5.14 86.30 0.44 1.61 16 14 C 0.19 5.24 3.65 29.85 0.11 5.35 16 15 H 0.12 3.37 8.12 -2.39 -0.02 3.35 16 16 O -0.56 -16.50 12.80 -148.98 -1.91 -18.40 16 17 C -0.22 -5.32 5.48 24.59 0.13 -5.19 16 18 C -0.13 -2.71 10.04 21.22 0.21 -2.49 16 19 C -0.14 -2.37 10.18 21.22 0.22 -2.16 16 20 C -0.21 -3.49 11.23 66.72 0.75 -2.74 16 21 S 0.09 1.78 22.63 -56.49 -1.28 0.50 16 22 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 23 H 0.05 1.81 7.35 -2.39 -0.02 1.79 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 25 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 26 H 0.34 14.70 7.91 -89.70 -0.71 13.99 16 27 H 0.08 2.53 7.36 -2.39 -0.02 2.51 16 28 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16 29 H 0.38 9.35 8.45 -74.06 -0.63 8.72 16 30 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -65.50 284.44 -1.06 -66.55 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.23 Total: 24.54 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.33 Total: -29.57 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -2.82 Total: -89.27 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -1.91 Total: -18.40 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.85 Total: 45.63 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -1.28 Total: 0.50 kcal Total: -65.50 -1.06 -66.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308599892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.319 kcal (2) G-P(sol) polarization free energy of solvation -65.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds