Wall clock time and date at job start Mon Mar 30 2020 03:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99791 * 2 1 4 4 H 1.48500 * 109.47008 * 239.99786 * 3 2 1 5 5 H 1.48498 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47272 * 119.99917 * 3 2 1 7 7 C 1.37877 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99465 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00228 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99835 * 96.62267 * 10 9 7 12 12 C 1.53006 * 109.46737 * 93.28121 * 11 10 9 13 13 C 1.53786 * 113.61351 * 86.67496 * 12 11 10 14 14 C 1.54054 * 86.98421 * 140.01707 * 13 12 11 15 15 C 1.53778 * 87.07792 * 334.57028 * 14 13 12 16 16 C 1.34771 * 119.99963 * 276.62641 * 10 9 7 17 17 O 1.21353 * 120.00057 * 176.14556 * 16 10 9 18 18 C 1.49440 * 119.99847 * 356.14491 * 16 10 9 19 19 O 1.21246 * 120.00180 * 5.76531 * 18 16 10 20 20 O 1.34541 * 119.99458 * 185.76628 * 18 16 10 21 21 H 0.96997 * 120.00261 * 0.02562 * 1 2 3 22 22 H 1.08990 * 109.47450 * 60.00158 * 9 7 2 23 23 H 1.09007 * 109.47307 * 299.99559 * 9 7 2 24 24 H 1.08997 * 109.47682 * 333.28490 * 11 10 9 25 25 H 1.08998 * 109.46755 * 213.27849 * 11 10 9 26 26 H 1.08997 * 112.85011 * 315.48244 * 12 11 10 27 27 H 1.08999 * 113.61478 * 254.61387 * 13 12 11 28 28 H 1.08998 * 113.60973 * 25.51675 * 13 12 11 29 29 H 1.09000 * 113.61596 * 220.02046 * 14 13 12 30 30 H 1.09002 * 113.60737 * 89.11504 * 14 13 12 31 31 H 1.09003 * 113.61581 * 270.88256 * 15 14 13 32 32 H 1.08994 * 113.68935 * 139.98744 * 15 14 13 33 33 H 0.96697 * 116.99651 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.5679 -4.2645 1.2609 12 6 1.6576 -5.4723 1.4924 13 6 2.1651 -6.7627 0.8272 14 6 1.7082 -7.5016 2.0995 15 6 1.8894 -6.1683 2.8440 16 6 2.7434 -4.0373 -1.1588 17 8 3.5841 -4.9124 -1.1519 18 6 2.3071 -3.4305 -2.4529 19 8 1.5463 -2.4865 -2.4539 20 8 2.7587 -3.9319 -3.6169 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 2.4504 -3.5582 2.0826 25 1 3.6053 -4.5955 1.2117 26 1 0.6091 -5.2579 1.2858 27 1 1.6066 -7.0422 -0.0661 28 1 3.2443 -6.7805 0.6758 29 1 2.3986 -8.2802 2.4239 30 1 0.6735 -7.8419 2.0589 31 1 2.8935 -6.0239 3.2429 32 1 1.1093 -5.9671 3.5781 33 1 2.4490 -3.5059 -4.4279 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308856660.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:16 Heat of formation + Delta-G solvation = -92.627470 kcal Electronic energy + Delta-G solvation = -17908.595966 eV Core-core repulsion = 14935.806322 eV Total energy + Delta-G solvation = -2972.789643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.25354 -38.90303 -37.67439 -36.04972 -34.59305 -32.49851 -28.85374 -27.06570 -25.39945 -24.89779 -22.99512 -22.36608 -19.41688 -19.10286 -17.54423 -16.84372 -16.34999 -15.96935 -15.40584 -15.04224 -14.64201 -14.56787 -13.97539 -13.32353 -12.98879 -12.52819 -12.32871 -12.20969 -11.83720 -11.75821 -11.21100 -11.04320 -10.96739 -10.85050 -10.62198 -10.35230 -10.21183 -9.99958 -9.93330 -9.61795 -9.01488 -8.37158 -7.85504 -6.08014 -4.11896 1.93155 2.79915 3.29452 3.33686 3.36661 3.75017 4.31416 4.48785 4.85145 4.93814 4.98442 5.10957 5.27869 5.48726 5.70914 5.73917 5.91366 5.95706 5.99266 6.06489 6.23674 6.32683 6.42932 6.63066 6.73912 6.78994 7.36897 7.41484 7.81032 8.01170 8.14117 8.24920 8.65163 8.90435 9.51842 11.00565 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.008425 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.205649 B = 3322.787263 C = 4170.775946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.219 3.781 10 N -0.557 5.557 11 C 0.128 3.872 12 C -0.127 4.127 13 C -0.128 4.128 14 C -0.144 4.144 15 C -0.131 4.131 16 C 0.532 3.468 17 O -0.533 6.533 18 C 0.452 3.548 19 O -0.434 6.434 20 O -0.505 6.505 21 H 0.263 0.737 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -9.849 0.985 10.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.101 3.899 10 N -0.289 5.289 11 C 0.006 3.994 12 C -0.147 4.147 13 C -0.165 4.165 14 C -0.182 4.182 15 C -0.169 4.169 16 C 0.314 3.686 17 O -0.412 6.412 18 C 0.287 3.713 19 O -0.316 6.316 20 O -0.316 6.316 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.053 0.947 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.305 -10.054 1.363 10.404 hybrid contribution 0.116 1.498 -0.610 1.621 sum 2.421 -8.556 0.752 8.924 Atomic orbital electron populations 1.69908 1.05930 1.27074 1.49861 1.24835 0.94802 0.98952 0.94796 0.86605 0.79557 0.82900 0.78612 1.20297 1.21140 1.20243 1.21231 0.92963 0.90404 1.51774 0.92701 1.20122 0.87800 0.81866 1.00145 1.48186 1.43082 1.33452 1.04157 1.21529 0.98563 0.93780 0.85561 1.22996 1.00568 0.94408 0.96706 1.22979 1.01721 0.95430 0.96419 1.22873 1.01079 0.96560 0.97649 1.22848 1.01927 0.96017 0.96108 1.18621 0.83181 0.83174 0.83621 1.90680 1.32245 1.31562 1.86682 1.23376 0.79686 0.82375 0.85854 1.91023 1.29753 1.23892 1.86930 1.84613 1.69648 1.60973 1.16339 0.92685 0.91031 0.94683 0.89486 0.90419 0.89012 0.92196 0.89450 0.91850 0.90638 0.90073 0.91550 0.73582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.23 8.35 -34.44 -0.29 -14.52 16 8 H 0.05 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.22 5.38 4.75 -5.19 -0.02 5.35 16 10 N -0.56 -11.73 2.48 -175.57 -0.44 -12.16 16 11 C 0.13 2.24 5.21 -4.04 -0.02 2.22 16 12 C -0.13 -1.92 3.94 -89.80 -0.35 -2.27 16 13 C -0.13 -1.84 6.91 -25.77 -0.18 -2.02 16 14 C -0.14 -1.69 8.09 -25.78 -0.21 -1.90 16 15 C -0.13 -1.59 7.64 -25.92 -0.20 -1.79 16 16 C 0.53 11.33 7.66 -11.59 -0.09 11.24 16 17 O -0.53 -11.57 15.55 -7.59 -0.12 -11.69 16 18 C 0.45 9.25 8.28 35.40 0.29 9.55 16 19 O -0.43 -10.12 13.18 -19.07 -0.25 -10.37 16 20 O -0.50 -8.31 13.30 -45.06 -0.60 -8.91 16 21 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 22 H 0.07 1.90 5.38 -51.94 -0.28 1.62 16 23 H 0.04 0.88 8.02 -51.92 -0.42 0.46 16 24 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 25 H 0.08 1.34 7.19 -51.93 -0.37 0.97 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.34 7.64 -51.93 -0.40 0.94 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.41 4.43 9.11 45.56 0.41 4.84 16 LS Contribution 285.27 15.07 4.30 4.30 Total: -1.00 -31.24 285.27 -6.10 -37.34 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -3.55 Total: 2.19 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -1.16 Total: 7.67 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.30 Total: -36.93 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.97 Total: -30.97 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.24 -6.10 -37.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308856660.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.287 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds