Wall clock time and date at job start Mon Mar 30 2020 03:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99791 * 2 1 4 4 H 1.48500 * 109.47008 * 239.99786 * 3 2 1 5 5 H 1.48498 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47272 * 119.99917 * 3 2 1 7 7 C 1.37877 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99465 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00228 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99835 * 96.62267 * 10 9 7 12 12 C 1.53006 * 109.46737 * 93.28121 * 11 10 9 13 13 C 1.53786 * 113.61351 * 86.67496 * 12 11 10 14 14 C 1.54054 * 86.98421 * 140.01707 * 13 12 11 15 15 C 1.53778 * 87.07792 * 334.57028 * 14 13 12 16 16 C 1.34771 * 119.99963 * 276.62641 * 10 9 7 17 17 O 1.21353 * 120.00057 * 176.14556 * 16 10 9 18 18 C 1.49440 * 119.99847 * 356.14491 * 16 10 9 19 19 O 1.21246 * 120.00180 * 5.76531 * 18 16 10 20 20 O 1.34541 * 119.99458 * 185.76628 * 18 16 10 21 21 H 0.96997 * 120.00261 * 0.02562 * 1 2 3 22 22 H 1.08990 * 109.47450 * 60.00158 * 9 7 2 23 23 H 1.09007 * 109.47307 * 299.99559 * 9 7 2 24 24 H 1.08997 * 109.47682 * 333.28490 * 11 10 9 25 25 H 1.08998 * 109.46755 * 213.27849 * 11 10 9 26 26 H 1.08997 * 112.85011 * 315.48244 * 12 11 10 27 27 H 1.08999 * 113.61478 * 254.61387 * 13 12 11 28 28 H 1.08998 * 113.60973 * 25.51675 * 13 12 11 29 29 H 1.09000 * 113.61596 * 220.02046 * 14 13 12 30 30 H 1.09002 * 113.60737 * 89.11504 * 14 13 12 31 31 H 1.09003 * 113.61581 * 270.88256 * 15 14 13 32 32 H 1.08994 * 113.68935 * 139.98744 * 15 14 13 33 33 H 0.96697 * 116.99651 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.5679 -4.2645 1.2609 12 6 1.6576 -5.4723 1.4924 13 6 2.1651 -6.7627 0.8272 14 6 1.7082 -7.5016 2.0995 15 6 1.8894 -6.1683 2.8440 16 6 2.7434 -4.0373 -1.1588 17 8 3.5841 -4.9124 -1.1519 18 6 2.3071 -3.4305 -2.4529 19 8 1.5463 -2.4865 -2.4539 20 8 2.7587 -3.9319 -3.6169 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 2.4504 -3.5582 2.0826 25 1 3.6053 -4.5955 1.2117 26 1 0.6091 -5.2579 1.2858 27 1 1.6066 -7.0422 -0.0661 28 1 3.2443 -6.7805 0.6758 29 1 2.3986 -8.2802 2.4239 30 1 0.6735 -7.8419 2.0589 31 1 2.8935 -6.0239 3.2429 32 1 1.1093 -5.9671 3.5781 33 1 2.4490 -3.5059 -4.4279 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308856660.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:15 Heat of formation + Delta-G solvation = -112.590246 kcal Electronic energy + Delta-G solvation = -17909.461616 eV Core-core repulsion = 14935.806322 eV Total energy + Delta-G solvation = -2973.655294 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.88254 -40.29020 -39.08317 -37.65449 -36.27789 -34.51535 -30.39305 -28.94180 -26.60753 -26.32117 -24.88034 -23.73617 -20.94894 -20.27236 -19.13974 -18.78315 -18.09619 -17.55150 -17.08881 -16.57122 -16.14847 -15.93065 -15.61185 -14.80869 -14.54164 -14.31994 -13.94220 -13.66788 -13.28473 -13.16608 -12.78910 -12.74927 -12.56093 -12.37435 -12.30124 -11.99279 -11.81217 -11.44841 -11.24353 -11.04096 -10.81446 -10.36850 -9.58493 -8.17224 -6.28050 0.26411 1.26544 1.40052 1.41497 1.49031 2.07722 2.39980 2.80713 3.15745 3.72961 3.83232 3.86481 3.99121 4.03634 4.42324 4.53419 4.69040 4.78990 4.89442 4.95904 5.00526 5.13448 5.14543 5.15823 5.39429 5.44092 5.64194 5.69618 5.74951 6.07568 6.22968 6.67285 6.80377 7.06798 7.39363 8.90464 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.008425 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.205649 B = 3322.787263 C = 4170.775946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.047 0.953 9 C 0.237 3.763 10 N -0.558 5.558 11 C 0.124 3.876 12 C -0.133 4.133 13 C -0.132 4.132 14 C -0.130 4.130 15 C -0.121 4.121 16 C 0.525 3.475 17 O -0.538 6.538 18 C 0.460 3.540 19 O -0.469 6.469 20 O -0.491 6.491 21 H 0.265 0.735 22 H 0.053 0.947 23 H 0.025 0.975 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -10.340 1.470 10.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.178 4.178 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.065 0.935 9 C 0.117 3.883 10 N -0.289 5.289 11 C 0.003 3.997 12 C -0.153 4.153 13 C -0.169 4.169 14 C -0.167 4.167 15 C -0.158 4.158 16 C 0.307 3.693 17 O -0.418 6.418 18 C 0.297 3.703 19 O -0.354 6.354 20 O -0.305 6.305 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 3.064 -10.572 1.832 11.159 hybrid contribution -0.078 1.583 -0.842 1.795 sum 2.986 -8.989 0.990 9.524 Atomic orbital electron populations 1.70009 1.07195 1.27902 1.50754 1.25586 0.95590 1.02146 0.94514 0.85671 0.78464 0.79155 0.78719 1.20404 1.20470 1.19180 1.21442 0.92670 0.91677 1.51443 0.93495 1.19674 0.87845 0.82216 0.98599 1.48173 1.42431 1.32850 1.05495 1.21762 0.99356 0.94568 0.84043 1.23003 0.99249 0.93596 0.99417 1.22958 1.00902 0.95782 0.97295 1.22825 1.01995 0.96632 0.95264 1.22846 1.02983 0.95291 0.94724 1.18825 0.83136 0.83224 0.84093 1.90669 1.32441 1.31787 1.86883 1.23204 0.78892 0.81622 0.86609 1.91022 1.31371 1.25448 1.87515 1.84549 1.68861 1.60574 1.16503 0.92572 0.92918 0.95743 0.89506 0.90101 0.90193 0.93397 0.90436 0.90050 0.89693 0.89007 0.90364 0.70530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.10 13.29 21.45 0.28 -52.82 16 2 C 0.02 1.19 5.46 84.65 0.46 1.65 16 3 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.53 -29.12 8.35 25.60 0.21 -28.91 16 8 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 9 C 0.24 11.82 4.75 85.63 0.41 12.23 16 10 N -0.56 -23.68 2.48 -827.73 -2.05 -25.73 16 11 C 0.12 4.31 5.21 86.38 0.45 4.76 16 12 C -0.13 -3.92 3.94 -10.26 -0.04 -3.96 16 13 C -0.13 -3.66 6.91 31.22 0.22 -3.45 16 14 C -0.13 -2.72 8.09 31.21 0.25 -2.47 16 15 C -0.12 -2.66 7.64 31.12 0.24 -2.42 16 16 C 0.52 22.30 7.66 87.27 0.67 22.97 16 17 O -0.54 -23.08 15.55 9.25 0.14 -22.93 16 18 C 0.46 18.72 8.28 70.84 0.59 19.30 16 19 O -0.47 -22.05 13.18 20.65 0.27 -21.78 16 20 O -0.49 -15.43 13.30 -49.71 -0.66 -16.09 16 21 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 22 H 0.05 2.88 5.38 -2.42 -0.01 2.87 16 23 H 0.02 1.26 8.02 -2.38 -0.02 1.24 16 24 H 0.09 2.98 8.05 -2.39 -0.02 2.96 16 25 H 0.08 2.75 7.19 -2.39 -0.02 2.73 16 26 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 2.31 7.64 -2.39 -0.02 2.29 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.43 8.54 9.11 -74.06 -0.67 7.87 16 Total: -1.00 -65.89 285.27 3.92 -61.97 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.45 Total: 11.95 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 3.45 Total: 19.72 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.77 Total: -78.55 kcal Atomic # 8 Polarization: -60.55 SS G_CDS: -0.24 Total: -60.79 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -65.89 3.92 -61.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308856660.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.617 kcal (2) G-P(sol) polarization free energy of solvation -65.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds