Wall clock time and date at job start Mon Mar 30 2020 03:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00018 * 2 1 4 4 C 1.50696 * 109.47503 * 180.02562 * 3 2 1 5 5 N 1.31797 * 119.04852 * 270.00149 * 4 3 2 6 6 C 1.32545 * 121.04350 * 179.97438 * 5 4 3 7 7 C 1.50703 * 120.41622 * 180.27184 * 6 5 4 8 8 C 1.38375 * 119.16287 * 359.97438 * 6 5 4 9 9 F 1.35102 * 120.85819 * 180.02562 * 8 6 5 10 10 C 1.39866 * 118.27588 * 359.97438 * 8 6 5 11 11 N 1.38589 * 120.54607 * 180.02562 * 10 8 6 12 12 C 1.36912 * 119.99717 * 179.97438 * 11 10 8 13 13 H 1.07997 * 120.00275 * 0.02562 * 12 11 10 14 14 C 1.38850 * 119.99970 * 179.97438 * 12 11 10 15 15 N 1.31537 * 119.99824 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00060 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46888 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47037 * 119.99931 * 16 14 12 19 19 H 1.48497 * 109.46981 * 239.99939 * 16 14 12 20 20 N 1.31719 * 119.05105 * 89.99654 * 4 3 2 21 21 H 1.09002 * 109.46791 * 300.00345 * 1 2 3 22 22 H 1.09000 * 109.46769 * 59.99918 * 1 2 3 23 23 H 1.08993 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47406 * 59.99668 * 3 2 1 25 25 H 1.09004 * 109.47156 * 300.00050 * 3 2 1 26 26 H 1.08997 * 109.46999 * 269.71805 * 7 6 5 27 27 H 1.08990 * 109.47179 * 29.72458 * 7 6 5 28 28 H 1.09002 * 109.46937 * 149.72705 * 7 6 5 29 29 H 0.97002 * 120.00468 * 359.97438 * 11 10 8 30 30 H 0.96999 * 119.99978 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.1509 1.1358 1.1513 6 6 5.4714 1.0308 1.1969 7 6 6.1865 0.9678 2.5219 8 6 6.1846 0.9735 0.0124 9 9 7.5313 0.8659 0.0189 10 6 5.4749 1.0288 -1.1916 11 7 6.1417 0.9746 -2.4053 12 6 5.4358 1.0291 -3.5772 13 1 4.3595 1.1148 -3.5557 14 6 6.1039 0.9754 -4.7932 15 7 7.4150 0.8726 -4.8193 16 14 5.1408 1.0505 -6.3921 17 1 3.6911 1.1661 -6.0917 18 1 5.5786 2.2315 -7.1786 19 1 5.3873 -0.1859 -7.1768 20 7 4.1496 1.1362 -1.1524 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.6886 1.8465 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 6.4446 1.9767 2.8438 27 1 5.5363 0.5048 3.2640 28 1 7.0960 0.3764 2.4162 29 1 7.1085 0.8981 -2.4246 30 1 7.8817 0.8354 -5.6688 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309084861.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:44 Heat of formation + Delta-G solvation = -65.099956 kcal Electronic energy + Delta-G solvation = -16978.857850 eV Core-core repulsion = 13916.094335 eV Total energy + Delta-G solvation = -3062.763515 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.66294 -41.55753 -38.73212 -37.77140 -34.92036 -34.06200 -31.81498 -29.70519 -28.66790 -26.82096 -26.50600 -23.36102 -22.86158 -20.48649 -18.64533 -18.46114 -17.99931 -17.53817 -16.79064 -16.68758 -16.49527 -16.00067 -15.58753 -14.95170 -14.85833 -14.15844 -14.00540 -13.62104 -13.44842 -13.25204 -13.22504 -13.06534 -12.61928 -12.60405 -12.21094 -12.10059 -11.91429 -11.13790 -10.63944 -10.42611 -9.87363 -9.29379 -8.69257 -5.98573 0.02911 0.42901 1.38675 1.44109 1.54752 2.14641 2.42860 2.67760 2.92741 3.17678 3.28447 3.47298 3.66864 4.07878 4.26952 4.27853 4.53385 4.61282 4.65433 4.75096 4.76196 4.90403 4.97414 5.06787 5.24676 5.42387 5.85984 6.18967 6.24105 6.59835 7.04408 7.15767 7.61800 8.46956 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.008650 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.617101 B = 3236.295362 C = 4706.459904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.147 3.853 4 C 0.340 3.660 5 N -0.577 5.577 6 C 0.176 3.824 7 C -0.092 4.092 8 C -0.142 4.142 9 F -0.142 7.142 10 C 0.336 3.664 11 N -0.516 5.516 12 C -0.313 4.313 13 H 0.110 0.890 14 C -0.018 4.018 15 N -0.912 5.912 16 Si 1.009 2.991 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.271 1.271 20 N -0.576 5.576 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.407 0.593 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 1.056 8.135 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C 0.069 3.931 4 C 0.068 3.932 5 N -0.304 5.304 6 C 0.035 3.965 7 C -0.149 4.149 8 C -0.175 4.175 9 F -0.122 7.122 10 C 0.087 3.913 11 N -0.122 5.122 12 C -0.444 4.444 13 H 0.128 0.872 14 C -0.220 4.220 15 N -0.548 5.548 16 Si 0.831 3.169 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.196 1.196 20 N -0.307 5.307 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.243 0.757 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.728 0.941 7.669 11.657 hybrid contribution 1.492 0.031 -1.054 1.827 sum -7.237 0.972 6.615 9.852 Atomic orbital electron populations 1.22990 0.78279 1.04064 1.01467 1.87895 1.22440 1.27183 1.95720 1.20906 0.83590 0.85701 1.02935 1.22856 0.97350 0.89918 0.83066 1.68074 1.07705 1.25619 1.29024 1.21878 0.89733 0.89939 0.94957 1.20713 0.99578 1.04521 0.90062 1.18427 0.78383 1.25669 0.95071 1.91335 1.28476 1.95209 1.97159 1.18698 0.89316 0.97423 0.85877 1.40971 1.08742 1.60323 1.02212 1.20237 0.94061 1.47496 0.82618 0.87212 1.26457 0.96850 0.95448 1.03262 1.69759 1.08469 1.46937 1.29682 0.84622 0.78402 0.78400 0.75499 1.18296 1.19417 1.19599 1.67708 1.06590 1.25431 1.30958 0.91919 0.92927 0.88455 0.88501 0.90402 0.88253 0.88531 0.89920 0.75711 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -13.81 10.69 -148.98 -1.59 -15.41 16 3 C 0.15 4.81 6.37 71.23 0.45 5.27 16 4 C 0.34 14.41 7.27 138.77 1.01 15.42 16 5 N -0.58 -23.36 10.27 -176.11 -1.81 -25.17 16 6 C 0.18 6.92 6.82 42.48 0.29 7.21 16 7 C -0.09 -2.54 10.06 71.24 0.72 -1.82 16 8 C -0.14 -6.43 7.33 22.70 0.17 -6.26 16 9 F -0.14 -6.20 16.08 44.97 0.72 -5.47 16 10 C 0.34 17.04 7.47 133.20 1.00 18.04 16 11 N -0.52 -27.69 5.41 -188.51 -1.02 -28.71 16 12 C -0.31 -17.06 9.72 84.05 0.82 -16.25 16 13 H 0.11 6.04 7.11 -2.91 -0.02 6.02 16 14 C -0.02 -0.93 5.50 84.88 0.47 -0.46 16 15 N -0.91 -48.91 13.05 21.65 0.28 -48.63 16 16 Si 1.01 40.65 29.55 68.60 2.03 42.68 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 18 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 19 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 20 N -0.58 -28.22 9.14 -185.21 -1.69 -29.91 16 21 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 25 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 26 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.08 2.15 7.71 -2.39 -0.02 2.13 16 29 H 0.41 22.08 7.46 -92.71 -0.69 21.39 16 30 H 0.29 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -63.94 274.66 3.56 -60.37 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.48 Total: 27.27 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 6.16 Total: 22.98 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -4.24 Total: -132.42 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -1.59 Total: -15.41 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.72 Total: -5.47 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -63.94 3.56 -60.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309084861.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.725 kcal (2) G-P(sol) polarization free energy of solvation -63.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds