Wall clock time and date at job start Mon Mar 30 2020 03:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.40236 * 119.97536 * 149.61661 * 3 2 1 5 5 C 1.36336 * 120.66058 * 179.97438 * 4 3 2 6 6 C 1.39343 * 120.24641 * 0.04614 * 5 4 3 7 7 N 1.37490 * 133.23717 * 179.97438 * 6 5 4 8 8 H 0.97006 * 125.02097 * 359.95440 * 7 6 5 9 9 C 1.36856 * 109.96018 * 179.97438 * 7 6 5 10 10 C 1.50697 * 125.02048 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47188 * 185.02871 * 10 9 7 12 12 N 1.46905 * 109.47125 * 305.02649 * 10 9 7 13 13 C 1.50703 * 109.47094 * 65.02577 * 10 9 7 14 14 H 1.08000 * 119.99934 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99701 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00608 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99602 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47141 * 90.00118 * 17 15 13 19 19 H 1.48505 * 109.46875 * 210.00255 * 17 15 13 20 20 H 1.48499 * 109.47153 * 329.99723 * 17 15 13 21 21 C 1.34195 * 109.95571 * 0.24463 * 9 7 6 22 22 C 1.40831 * 119.65414 * 359.95451 * 6 5 4 23 23 C 1.39170 * 119.98210 * 329.63815 * 3 2 1 24 24 H 1.08004 * 119.66704 * 0.04715 * 4 3 2 25 25 H 1.08001 * 119.87337 * 179.97438 * 5 4 3 26 26 H 1.00901 * 110.99869 * 296.04907 * 12 10 9 27 27 H 1.00896 * 110.99543 * 60.00030 * 12 10 9 28 28 H 0.96991 * 120.00497 * 180.02562 * 16 15 13 29 29 H 1.08007 * 126.53285 * 179.73811 * 21 9 7 30 30 H 1.07998 * 120.30529 * 359.95610 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.0489 -0.6144 5 6 4.6315 1.0638 -0.6222 6 6 5.3482 0.0328 -0.0180 7 7 6.6916 -0.2194 0.1301 8 1 7.4046 0.3479 -0.2028 9 6 6.8744 -1.3893 0.8162 10 6 8.2130 -1.9866 1.1660 11 1 8.0655 -2.9605 1.6328 12 7 9.0128 -2.1455 -0.0560 13 6 8.9352 -1.0745 2.1240 14 1 8.4710 -0.1546 2.4474 15 6 10.1880 -1.4151 2.5882 16 7 10.7530 -2.5356 2.1947 17 14 11.0828 -0.2848 3.7762 18 1 10.7367 -0.6587 5.1710 19 1 12.5484 -0.4179 3.5771 20 1 10.6748 1.1207 3.5247 21 6 5.6856 -1.9290 1.1263 22 6 4.6570 -1.0258 0.6024 23 6 3.2640 -1.0392 0.6093 24 1 2.7220 1.8530 -1.0851 25 1 5.1578 1.8772 -1.0995 26 1 8.5810 -2.8032 -0.6877 27 1 9.1635 -1.2559 -0.5076 28 1 11.6342 -2.7753 2.5216 29 1 5.5185 -2.8522 1.6615 30 1 2.7290 -1.8484 1.0840 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309237783.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:24 Heat of formation + Delta-G solvation = 80.764920 kcal Electronic energy + Delta-G solvation = -15716.326013 eV Core-core repulsion = 13090.656899 eV Total energy + Delta-G solvation = -2625.669114 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.02995 -37.71719 -35.91853 -34.22053 -31.89353 -31.52523 -29.50316 -28.53626 -26.15768 -23.50344 -22.72080 -21.17886 -19.71710 -18.27422 -17.54300 -16.60494 -15.45352 -14.68340 -14.40600 -14.31890 -14.30511 -13.85367 -13.55453 -13.50889 -12.81953 -12.58441 -12.50083 -12.45553 -12.03240 -11.46971 -11.25087 -10.94597 -10.85917 -10.70539 -10.09600 -9.63663 -9.34075 -8.60198 -7.94609 -7.53067 -7.27273 -6.06453 -4.24103 1.03161 1.42040 2.76384 3.09872 3.21974 3.24513 3.31235 3.34485 3.49034 4.05470 4.11136 4.34065 4.82691 5.00626 5.19060 5.40195 5.42323 5.51090 5.89321 6.00160 6.04212 6.08960 6.24899 6.42083 6.53702 6.77282 6.94716 7.21466 7.52826 7.60075 7.69803 7.83286 7.98341 8.35807 8.72372 8.90295 9.46849 10.97398 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.043292 B = 0.005023 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.615024 B = 5572.949533 C = 5677.149289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.271 3.729 3 C -0.077 4.077 4 C -0.069 4.069 5 C -0.126 4.126 6 C 0.113 3.887 7 N -0.577 5.577 8 H 0.416 0.584 9 C 0.108 3.892 10 C 0.271 3.729 11 H 0.067 0.933 12 N -0.807 5.807 13 C -0.544 4.544 14 H 0.055 0.945 15 C 0.087 3.913 16 N -0.842 5.842 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.227 4.227 22 C -0.106 4.106 23 C -0.015 4.015 24 H 0.127 0.873 25 H 0.124 0.876 26 H 0.304 0.696 27 H 0.315 0.685 28 H 0.259 0.741 29 H 0.144 0.856 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 4.378 -5.365 10.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.043 4.043 3 C -0.083 4.083 4 C -0.091 4.091 5 C -0.147 4.147 6 C 0.002 3.998 7 N -0.178 5.178 8 H 0.253 0.747 9 C -0.004 4.004 10 C 0.161 3.839 11 H 0.085 0.915 12 N -0.332 5.332 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.121 4.121 16 N -0.476 5.476 17 Si 0.715 3.285 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.251 4.251 22 C -0.112 4.112 23 C -0.036 4.036 24 H 0.145 0.855 25 H 0.142 0.858 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.069 0.931 29 H 0.162 0.838 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.538 3.991 -4.895 10.620 hybrid contribution 0.465 1.323 0.080 1.404 sum -8.073 5.314 -4.816 10.798 Atomic orbital electron populations 1.81204 1.12250 1.08706 1.10156 1.25775 0.92657 0.93037 0.92809 1.15602 0.83785 0.99660 1.09219 1.20264 0.93021 0.97034 0.98774 1.19592 0.93194 0.98146 1.03781 1.18504 0.84312 0.96845 1.00143 1.41942 1.05043 1.21808 1.48982 0.74667 1.22885 1.00519 0.84941 0.92009 1.18178 0.79903 0.96483 0.89319 0.91534 1.59168 1.53148 1.12939 1.07957 1.20775 1.02409 1.07203 1.27856 0.92691 1.24922 0.97079 0.94851 0.95232 1.70076 1.14970 1.21704 1.40800 0.86698 0.79006 0.81199 0.81572 1.20550 1.21154 1.20055 1.21479 0.89550 1.02730 1.11323 1.19148 0.92419 0.96616 1.02968 1.20489 0.92020 0.95987 0.95114 0.85501 0.85764 0.88561 0.87359 0.93108 0.83779 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.80 18.54 41.84 0.78 -6.02 16 2 C 0.27 3.65 15.32 -22.47 -0.34 3.30 16 3 C -0.08 -0.97 5.73 -106.87 -0.61 -1.59 16 4 C -0.07 -0.79 9.66 -39.52 -0.38 -1.17 16 5 C -0.13 -1.51 10.00 -39.86 -0.40 -1.91 16 6 C 0.11 1.67 7.27 -83.94 -0.61 1.06 16 7 N -0.58 -9.10 6.06 -6.91 -0.04 -9.14 16 8 H 0.42 5.90 8.96 -40.82 -0.37 5.53 16 9 C 0.11 1.97 5.81 -81.78 -0.47 1.50 16 10 C 0.27 5.90 3.08 -70.01 -0.22 5.68 16 11 H 0.07 1.60 8.09 -51.93 -0.42 1.18 16 12 N -0.81 -16.50 8.53 -6.65 -0.06 -16.55 16 13 C -0.54 -13.41 8.71 -34.44 -0.30 -13.71 16 14 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 15 C 0.09 2.24 5.39 -17.82 -0.10 2.14 16 16 N -0.84 -22.65 12.77 55.43 0.71 -21.94 16 17 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 C -0.23 -3.90 10.92 -37.65 -0.41 -4.31 16 22 C -0.11 -1.64 6.36 -105.16 -0.67 -2.31 16 23 C -0.01 -0.20 9.81 -38.84 -0.38 -0.58 16 24 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 25 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 26 H 0.30 5.56 9.06 -39.29 -0.36 5.20 16 27 H 0.31 5.98 8.98 -39.29 -0.35 5.63 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.14 2.30 8.06 -52.48 -0.42 1.88 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 278.18 15.07 4.19 4.19 Total: -1.00 -27.76 278.18 -7.07 -34.82 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -2.73 Total: 11.65 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -4.90 Total: -11.89 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 1.38 Total: -53.66 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.76 -7.07 -34.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309237783.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.589 kcal (2) G-P(sol) polarization free energy of solvation -27.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds