Wall clock time and date at job start Mon Mar 30 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.40236 * 119.97536 * 149.61661 * 3 2 1 5 5 C 1.36336 * 120.66058 * 179.97438 * 4 3 2 6 6 C 1.39343 * 120.24641 * 0.04614 * 5 4 3 7 7 N 1.37490 * 133.23717 * 179.97438 * 6 5 4 8 8 H 0.97006 * 125.02097 * 359.95440 * 7 6 5 9 9 C 1.36856 * 109.96018 * 179.97438 * 7 6 5 10 10 C 1.50697 * 125.02048 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47188 * 185.02871 * 10 9 7 12 12 N 1.46905 * 109.47125 * 305.02649 * 10 9 7 13 13 C 1.50703 * 109.47094 * 65.02577 * 10 9 7 14 14 H 1.08000 * 119.99934 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99701 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00608 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99602 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47141 * 90.00118 * 17 15 13 19 19 H 1.48505 * 109.46875 * 210.00255 * 17 15 13 20 20 H 1.48499 * 109.47153 * 329.99723 * 17 15 13 21 21 C 1.34195 * 109.95571 * 0.24463 * 9 7 6 22 22 C 1.40831 * 119.65414 * 359.95451 * 6 5 4 23 23 C 1.39170 * 119.98210 * 329.63815 * 3 2 1 24 24 H 1.08004 * 119.66704 * 0.04715 * 4 3 2 25 25 H 1.08001 * 119.87337 * 179.97438 * 5 4 3 26 26 H 1.00901 * 110.99869 * 296.04907 * 12 10 9 27 27 H 1.00896 * 110.99543 * 60.00030 * 12 10 9 28 28 H 0.96991 * 120.00497 * 180.02562 * 16 15 13 29 29 H 1.08007 * 126.53285 * 179.73811 * 21 9 7 30 30 H 1.07998 * 120.30529 * 359.95610 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.0489 -0.6144 5 6 4.6315 1.0638 -0.6222 6 6 5.3482 0.0328 -0.0180 7 7 6.6916 -0.2194 0.1301 8 1 7.4046 0.3479 -0.2028 9 6 6.8744 -1.3893 0.8162 10 6 8.2130 -1.9866 1.1660 11 1 8.0655 -2.9605 1.6328 12 7 9.0128 -2.1455 -0.0560 13 6 8.9352 -1.0745 2.1240 14 1 8.4710 -0.1546 2.4474 15 6 10.1880 -1.4151 2.5882 16 7 10.7530 -2.5356 2.1947 17 14 11.0828 -0.2848 3.7762 18 1 10.7367 -0.6587 5.1710 19 1 12.5484 -0.4179 3.5771 20 1 10.6748 1.1207 3.5247 21 6 5.6856 -1.9290 1.1263 22 6 4.6570 -1.0258 0.6024 23 6 3.2640 -1.0392 0.6093 24 1 2.7220 1.8530 -1.0851 25 1 5.1578 1.8772 -1.0995 26 1 8.5810 -2.8032 -0.6877 27 1 9.1635 -1.2559 -0.5076 28 1 11.6342 -2.7753 2.5216 29 1 5.5185 -2.8522 1.6615 30 1 2.7290 -1.8484 1.0840 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309237783.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:23 Heat of formation + Delta-G solvation = 63.261710 kcal Electronic energy + Delta-G solvation = -15717.085009 eV Core-core repulsion = 13090.656899 eV Total energy + Delta-G solvation = -2626.428110 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.21311 -38.85087 -37.12219 -35.82325 -33.42956 -32.92382 -30.63602 -29.81699 -27.93386 -24.86410 -23.96801 -22.40265 -21.07508 -19.42777 -18.69313 -18.43330 -16.89496 -16.18831 -16.01498 -15.58631 -15.47727 -14.94510 -14.73664 -14.61687 -14.29033 -14.09655 -13.78462 -13.61136 -13.35543 -13.07822 -12.76298 -12.60609 -12.27757 -11.91423 -11.80209 -11.25121 -10.66622 -10.55647 -9.20101 -8.93415 -8.58742 -7.99892 -6.22274 -0.03918 0.37478 1.44959 1.47965 1.54914 1.69265 1.88456 2.07346 2.29446 2.48095 2.98011 3.05747 3.25924 3.81028 3.99357 4.24772 4.32921 4.40820 4.53844 4.73054 4.79648 5.02050 5.11713 5.20784 5.39969 5.45102 5.73052 5.79627 5.92533 6.08064 6.22755 6.53876 6.59499 6.72574 7.05475 7.20156 7.51590 9.02818 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.043292 B = 0.005023 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.615024 B = 5572.949533 C = 5677.149289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.292 3.708 3 C -0.075 4.075 4 C -0.053 4.053 5 C -0.123 4.123 6 C 0.108 3.892 7 N -0.574 5.574 8 H 0.421 0.579 9 C 0.085 3.915 10 C 0.279 3.721 11 H 0.034 0.966 12 N -0.817 5.817 13 C -0.548 4.548 14 H 0.049 0.951 15 C 0.042 3.958 16 N -0.875 5.875 17 Si 0.946 3.054 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.270 1.270 21 C -0.231 4.231 22 C -0.129 4.129 23 C -0.013 4.013 24 H 0.160 0.840 25 H 0.155 0.845 26 H 0.316 0.684 27 H 0.324 0.676 28 H 0.257 0.743 29 H 0.145 0.855 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.813 6.233 -6.095 12.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.022 4.022 3 C -0.080 4.080 4 C -0.075 4.075 5 C -0.143 4.143 6 C -0.002 4.002 7 N -0.175 5.175 8 H 0.260 0.740 9 C -0.026 4.026 10 C 0.168 3.832 11 H 0.051 0.949 12 N -0.343 5.343 13 C -0.586 4.586 14 H 0.067 0.933 15 C -0.163 4.163 16 N -0.510 5.510 17 Si 0.772 3.228 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.195 1.195 21 C -0.256 4.256 22 C -0.134 4.134 23 C -0.034 4.034 24 H 0.177 0.823 25 H 0.173 0.827 26 H 0.127 0.873 27 H 0.136 0.864 28 H 0.066 0.934 29 H 0.163 0.837 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.672 5.864 -5.633 12.636 hybrid contribution 0.673 0.764 0.264 1.052 sum -8.999 6.629 -5.369 12.400 Atomic orbital electron populations 1.81240 1.13167 1.09725 1.11213 1.25745 0.92497 0.92094 0.91872 1.15658 0.83271 0.99883 1.09183 1.20644 0.92852 0.96912 0.97063 1.19922 0.93371 0.97973 1.03064 1.18859 0.83674 0.97474 1.00242 1.41777 1.05837 1.21107 1.48809 0.74030 1.22188 0.99092 0.86745 0.94614 1.17703 0.81662 0.94576 0.89261 0.94865 1.58959 1.53590 1.13813 1.07968 1.21063 1.02432 1.07124 1.28005 0.93295 1.25583 0.98008 0.95991 0.96715 1.70191 1.15195 1.23241 1.42404 0.85788 0.77741 0.79739 0.79544 1.20657 1.21225 1.19502 1.21641 0.90128 1.03005 1.10788 1.19186 0.93093 0.96866 1.04240 1.20608 0.91269 0.96645 0.94890 0.82274 0.82747 0.87260 0.86439 0.93409 0.83741 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.51 18.54 19.01 0.35 -13.15 16 2 C 0.29 7.04 15.32 88.33 1.35 8.39 16 3 C -0.07 -1.65 5.73 -21.32 -0.12 -1.77 16 4 C -0.05 -0.98 9.66 22.31 0.22 -0.76 16 5 C -0.12 -2.47 10.00 22.09 0.22 -2.25 16 6 C 0.11 2.97 7.27 39.16 0.28 3.25 16 7 N -0.57 -17.52 6.06 -175.78 -1.06 -18.58 16 8 H 0.42 11.48 8.96 -92.70 -0.83 10.65 16 9 C 0.08 3.13 5.81 40.85 0.24 3.37 16 10 C 0.28 12.41 3.08 43.42 0.13 12.54 16 11 H 0.03 1.69 8.09 -2.39 -0.02 1.67 16 12 N -0.82 -33.86 8.53 -174.95 -1.49 -35.35 16 13 C -0.55 -27.33 8.71 25.60 0.22 -27.10 16 14 H 0.05 2.45 7.74 -2.91 -0.02 2.43 16 15 C 0.04 2.16 5.39 84.65 0.46 2.61 16 16 N -0.88 -47.94 12.77 21.45 0.27 -47.67 16 17 Si 0.95 41.11 29.54 68.60 2.03 43.13 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 C -0.23 -7.98 10.92 23.52 0.26 -7.72 16 22 C -0.13 -3.81 6.36 -20.21 -0.13 -3.94 16 23 C -0.01 -0.31 9.81 22.75 0.22 -0.09 16 24 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 25 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 26 H 0.32 11.71 9.06 -89.69 -0.81 10.90 16 27 H 0.32 12.31 8.98 -89.70 -0.81 11.50 16 28 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 29 H 0.14 4.76 8.06 -2.91 -0.02 4.73 16 30 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -59.36 278.18 2.21 -57.14 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -1.23 Total: 27.95 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 3.35 Total: -13.47 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -1.93 Total: -114.75 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -59.36 2.21 -57.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309237783.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.402 kcal (2) G-P(sol) polarization free energy of solvation -59.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds