Wall clock time and date at job start Mon Mar 30 2020 03:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47187 * 239.99447 * 3 2 1 5 5 H 1.48494 * 109.47588 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46980 * 119.99916 * 3 2 1 7 7 C 1.39848 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 162.96516 * 7 2 1 9 9 C 1.41246 * 120.00082 * 342.96911 * 7 2 1 10 10 C 1.40857 * 120.51540 * 155.60026 * 9 7 2 11 11 N 1.31402 * 120.77221 * 180.02562 * 10 9 7 12 12 C 1.32671 * 122.00535 * 359.97438 * 11 10 9 13 13 N 1.38082 * 119.52629 * 180.02562 * 12 11 10 14 14 C 1.40766 * 120.94710 * 0.02562 * 12 11 10 15 15 C 1.48237 * 120.44067 * 179.97438 * 14 12 11 16 16 C 1.39834 * 120.90999 * 129.74641 * 15 14 12 17 17 C 1.37943 * 119.01685 * 179.74927 * 16 15 14 18 18 N 1.31951 * 120.88438 * 0.53212 * 17 16 15 19 19 C 1.31942 * 122.01306 * 359.71579 * 18 17 16 20 20 C 1.37940 * 120.89379 * 0.02562 * 19 18 17 21 21 C 1.38793 * 119.11298 * 359.97438 * 14 12 11 22 22 H 0.96999 * 119.99822 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.61901 * 359.97438 * 10 9 7 24 24 H 0.96995 * 119.99976 * 179.97438 * 13 12 11 25 25 H 0.97005 * 120.00019 * 359.97103 * 13 12 11 26 26 H 1.08004 * 120.49313 * 359.97438 * 16 15 14 27 27 H 1.08003 * 119.55973 * 180.24749 * 17 16 15 28 28 H 1.08003 * 119.54956 * 179.97438 * 19 18 17 29 29 H 1.07994 * 120.49643 * 179.97438 * 20 19 18 30 30 H 1.08000 * 120.90499 * 179.72486 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6963 -1.2124 5 1 1.2782 2.7464 -0.0006 6 1 3.0968 1.6963 1.2126 7 6 2.0083 -1.2111 0.0005 8 1 3.0528 -1.2318 -0.2734 9 6 1.3486 -2.4074 0.3593 10 6 1.8234 -3.6515 -0.0998 11 7 1.2133 -4.7674 0.2304 12 6 0.1346 -4.7770 1.0028 13 7 -0.4657 -5.9798 1.3184 14 6 -0.4066 -3.5787 1.5052 15 6 -1.6127 -3.6024 2.3668 16 6 -1.6369 -2.9208 3.5876 17 6 -2.7817 -2.9650 4.3559 18 7 -3.8390 -3.6465 3.9575 19 6 -3.8557 -4.3072 2.8156 20 6 -2.7553 -4.3118 1.9838 21 6 0.2039 -2.3746 1.1831 22 1 -0.4850 0.8400 -0.0004 23 1 2.6987 -3.6886 -0.7314 24 1 -1.2543 -5.9949 1.8828 25 1 -0.0987 -6.8098 0.9755 26 1 -0.7734 -2.3650 3.9221 27 1 -2.8114 -2.4383 5.2984 28 1 -4.7427 -4.8525 2.5286 29 1 -2.7758 -4.8551 1.0507 30 1 -0.1895 -1.4378 1.5491 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309239478.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:42 Heat of formation + Delta-G solvation = 59.112454 kcal Electronic energy + Delta-G solvation = -16215.621393 eV Core-core repulsion = 13589.013357 eV Total energy + Delta-G solvation = -2626.608036 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.86356 -38.36825 -34.68383 -33.38169 -32.55718 -30.83505 -29.86330 -28.61983 -24.89425 -23.62483 -23.02583 -21.39080 -20.63793 -17.55503 -16.51675 -16.32237 -16.06652 -15.55876 -15.28617 -14.89813 -13.73091 -13.53362 -13.46742 -13.31636 -12.79611 -12.76529 -11.96999 -11.69670 -11.39516 -11.33305 -11.12595 -10.67607 -10.10322 -9.76994 -9.49286 -9.17790 -9.05693 -8.83912 -8.28761 -8.03686 -6.94565 -6.71744 -4.29338 1.46033 1.49283 2.64834 2.85201 3.04953 3.07247 3.21317 3.90473 4.17547 4.59109 4.64926 4.73469 5.18827 5.19554 5.49183 5.52411 5.60202 5.93251 6.07715 6.11582 6.33306 6.51601 6.64656 6.79918 7.02712 7.07914 7.15125 7.27460 7.68093 7.75419 8.27420 8.27532 8.33567 8.50483 8.73457 8.77408 9.57302 10.16010 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023531 B = 0.007996 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.646713 B = 3500.852995 C = 4436.565974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.025 3.975 10 C 0.031 3.969 11 N -0.525 5.525 12 C 0.308 3.692 13 N -0.873 5.873 14 C -0.166 4.166 15 C 0.050 3.950 16 C -0.169 4.169 17 C 0.096 3.904 18 N -0.504 5.504 19 C 0.095 3.905 20 C -0.182 4.182 21 C -0.067 4.067 22 H 0.281 0.719 23 H 0.131 0.869 24 H 0.392 0.608 25 H 0.388 0.612 26 H 0.133 0.867 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.133 0.867 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -3.383 4.482 6.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.098 0.902 9 C 0.019 3.981 10 C -0.128 4.128 11 N -0.240 5.240 12 C 0.073 3.927 13 N -0.422 5.422 14 C -0.172 4.172 15 C 0.041 3.959 16 C -0.189 4.189 17 C -0.060 4.060 18 N -0.214 5.214 19 C -0.062 4.062 20 C -0.202 4.202 21 C -0.094 4.094 22 H 0.092 0.908 23 H 0.149 0.851 24 H 0.222 0.778 25 H 0.215 0.785 26 H 0.151 0.849 27 H 0.167 0.833 28 H 0.167 0.833 29 H 0.151 0.849 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.189 -3.919 4.663 7.393 hybrid contribution 0.616 1.400 -0.312 1.561 sum -3.573 -2.519 4.351 6.168 Atomic orbital electron populations 1.69789 1.07463 1.29341 1.36595 1.25847 0.94739 1.01248 0.92435 0.86352 0.80069 0.80278 0.79963 1.19006 1.20438 1.18892 1.19268 0.97777 0.90708 1.41089 0.90220 1.18283 0.93380 0.93704 0.92697 1.22360 1.01025 0.87241 1.02139 1.66575 1.09100 1.32514 1.15834 1.17684 0.92696 0.85005 0.97363 1.41743 1.34784 1.05258 1.60411 1.18774 0.98215 0.94155 1.06061 1.19252 0.92952 0.91380 0.92267 1.22298 1.00020 1.01405 0.95137 1.22571 0.88632 0.95683 0.99135 1.67592 1.28712 1.08632 1.16462 1.22549 0.97397 0.96151 0.90062 1.22263 0.93946 1.02556 1.01470 1.21662 0.96170 0.95292 0.96260 0.90817 0.85142 0.77786 0.78498 0.84930 0.83263 0.83304 0.84929 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.22 10.93 55.54 0.61 -19.61 16 2 C 0.07 1.78 5.18 -17.34 -0.09 1.69 16 3 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.55 9.06 -37.84 -0.34 -11.89 16 8 H 0.08 1.91 7.90 -52.49 -0.41 1.50 16 9 C 0.02 0.63 5.58 -106.69 -0.60 0.03 16 10 C 0.03 0.75 10.95 -16.75 -0.18 0.57 16 11 N -0.52 -12.33 10.35 -11.59 -0.12 -12.45 16 12 C 0.31 6.74 7.70 -155.06 -1.19 5.54 16 13 N -0.87 -15.23 8.64 31.32 0.27 -14.96 16 14 C -0.17 -3.67 5.54 -104.63 -0.58 -4.25 16 15 C 0.05 0.95 5.08 -104.59 -0.53 0.42 16 16 C -0.17 -2.91 9.67 -39.09 -0.38 -3.29 16 17 C 0.10 1.48 11.17 -17.61 -0.20 1.29 16 18 N -0.50 -8.12 10.35 -13.35 -0.14 -8.26 16 19 C 0.09 1.42 11.17 -17.61 -0.20 1.22 16 20 C -0.18 -3.00 7.85 -39.09 -0.31 -3.30 16 21 C -0.07 -1.65 8.31 -38.31 -0.32 -1.97 16 22 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 23 H 0.13 2.90 8.06 -52.49 -0.42 2.48 16 24 H 0.39 6.13 5.92 -40.82 -0.24 5.89 16 25 H 0.39 6.11 8.95 -40.82 -0.37 5.74 16 26 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 27 H 0.15 1.84 8.06 -52.48 -0.42 1.42 16 28 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.13 2.07 7.56 -52.49 -0.40 1.67 16 30 H 0.13 3.38 6.21 -52.49 -0.33 3.05 16 LS Contribution 265.51 15.07 4.00 4.00 Total: -1.00 -27.96 265.51 -7.89 -35.85 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -2.57 Total: 16.23 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -4.91 Total: -13.94 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.62 Total: -55.28 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.96 -7.89 -35.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309239478.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.966 kcal (2) G-P(sol) polarization free energy of solvation -27.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds