Wall clock time and date at job start Mon Mar 30 2020 03:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47187 * 239.99447 * 3 2 1 5 5 H 1.48494 * 109.47588 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46980 * 119.99916 * 3 2 1 7 7 C 1.39848 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 162.96516 * 7 2 1 9 9 C 1.41246 * 120.00082 * 342.96911 * 7 2 1 10 10 C 1.40857 * 120.51540 * 155.60026 * 9 7 2 11 11 N 1.31402 * 120.77221 * 180.02562 * 10 9 7 12 12 C 1.32671 * 122.00535 * 359.97438 * 11 10 9 13 13 N 1.38082 * 119.52629 * 180.02562 * 12 11 10 14 14 C 1.40766 * 120.94710 * 0.02562 * 12 11 10 15 15 C 1.48237 * 120.44067 * 179.97438 * 14 12 11 16 16 C 1.39834 * 120.90999 * 129.74641 * 15 14 12 17 17 C 1.37943 * 119.01685 * 179.74927 * 16 15 14 18 18 N 1.31951 * 120.88438 * 0.53212 * 17 16 15 19 19 C 1.31942 * 122.01306 * 359.71579 * 18 17 16 20 20 C 1.37940 * 120.89379 * 0.02562 * 19 18 17 21 21 C 1.38793 * 119.11298 * 359.97438 * 14 12 11 22 22 H 0.96999 * 119.99822 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.61901 * 359.97438 * 10 9 7 24 24 H 0.96995 * 119.99976 * 179.97438 * 13 12 11 25 25 H 0.97005 * 120.00019 * 359.97103 * 13 12 11 26 26 H 1.08004 * 120.49313 * 359.97438 * 16 15 14 27 27 H 1.08003 * 119.55973 * 180.24749 * 17 16 15 28 28 H 1.08003 * 119.54956 * 179.97438 * 19 18 17 29 29 H 1.07994 * 120.49643 * 179.97438 * 20 19 18 30 30 H 1.08000 * 120.90499 * 179.72486 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6963 -1.2124 5 1 1.2782 2.7464 -0.0006 6 1 3.0968 1.6963 1.2126 7 6 2.0083 -1.2111 0.0005 8 1 3.0528 -1.2318 -0.2734 9 6 1.3486 -2.4074 0.3593 10 6 1.8234 -3.6515 -0.0998 11 7 1.2133 -4.7674 0.2304 12 6 0.1346 -4.7770 1.0028 13 7 -0.4657 -5.9798 1.3184 14 6 -0.4066 -3.5787 1.5052 15 6 -1.6127 -3.6024 2.3668 16 6 -1.6369 -2.9208 3.5876 17 6 -2.7817 -2.9650 4.3559 18 7 -3.8390 -3.6465 3.9575 19 6 -3.8557 -4.3072 2.8156 20 6 -2.7553 -4.3118 1.9838 21 6 0.2039 -2.3746 1.1831 22 1 -0.4850 0.8400 -0.0004 23 1 2.6987 -3.6886 -0.7314 24 1 -1.2543 -5.9949 1.8828 25 1 -0.0987 -6.8098 0.9755 26 1 -0.7734 -2.3650 3.9221 27 1 -2.8114 -2.4383 5.2984 28 1 -4.7427 -4.8525 2.5286 29 1 -2.7758 -4.8551 1.0507 30 1 -0.1895 -1.4378 1.5491 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309239478.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:42 Heat of formation + Delta-G solvation = 42.214575 kcal Electronic energy + Delta-G solvation = -16216.354140 eV Core-core repulsion = 13589.013357 eV Total energy + Delta-G solvation = -2627.340783 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27313 -40.00727 -36.42016 -35.01322 -34.15146 -32.10259 -31.57427 -30.29851 -26.71193 -25.15781 -24.32887 -23.09886 -22.26389 -19.27483 -18.09864 -18.00270 -17.59278 -16.87228 -16.78419 -16.40106 -15.41958 -15.10310 -14.87969 -14.59114 -14.40335 -14.36711 -13.69618 -13.50445 -13.15623 -12.82566 -12.57932 -12.31460 -11.82779 -11.48103 -10.99199 -10.80480 -10.49947 -10.08515 -10.08078 -9.77773 -8.71565 -8.47014 -6.17376 0.02211 0.22941 0.94181 1.07894 1.41401 1.51441 1.56778 2.23443 2.75397 2.90794 3.10642 3.59346 3.67390 3.73581 4.04938 4.16316 4.24782 4.32981 4.69381 4.70161 4.85956 4.92311 5.01787 5.25914 5.31842 5.37128 5.56604 5.77315 5.85547 5.93488 6.44950 6.72586 6.79669 6.90966 7.03066 7.04793 7.81636 8.37004 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023531 B = 0.007996 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.646713 B = 3500.852995 C = 4436.565974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.489 4.489 8 H 0.081 0.919 9 C -0.004 4.004 10 C 0.016 3.984 11 N -0.536 5.536 12 C 0.307 3.693 13 N -0.854 5.854 14 C -0.165 4.165 15 C 0.022 3.978 16 C -0.179 4.179 17 C 0.103 3.897 18 N -0.511 5.511 19 C 0.104 3.896 20 C -0.181 4.181 21 C -0.083 4.083 22 H 0.286 0.714 23 H 0.141 0.859 24 H 0.404 0.596 25 H 0.399 0.601 26 H 0.129 0.871 27 H 0.182 0.818 28 H 0.188 0.812 29 H 0.140 0.860 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 -3.683 5.349 8.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.520 4.520 8 H 0.099 0.901 9 C -0.009 4.009 10 C -0.142 4.142 11 N -0.253 5.253 12 C 0.070 3.930 13 N -0.404 5.404 14 C -0.172 4.172 15 C 0.013 3.987 16 C -0.199 4.199 17 C -0.053 4.053 18 N -0.220 5.220 19 C -0.052 4.052 20 C -0.201 4.201 21 C -0.110 4.110 22 H 0.096 0.904 23 H 0.158 0.842 24 H 0.236 0.764 25 H 0.228 0.772 26 H 0.147 0.853 27 H 0.199 0.801 28 H 0.205 0.795 29 H 0.158 0.842 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.435 -4.261 5.536 8.851 hybrid contribution 0.874 1.351 -0.517 1.690 sum -4.561 -2.909 5.019 7.379 Atomic orbital electron populations 1.69858 1.08828 1.30357 1.37385 1.26644 0.95433 1.04266 0.91495 0.85282 0.78710 0.75899 0.80041 1.18423 1.19699 1.18523 1.19520 0.98102 0.91686 1.42720 0.90097 1.18588 0.94298 0.94454 0.93607 1.22522 1.01700 0.87256 1.02746 1.66619 1.09855 1.32172 1.16621 1.18009 0.92148 0.86441 0.96416 1.41618 1.34657 1.04250 1.59871 1.19004 0.99015 0.93399 1.05763 1.19245 0.92808 0.93739 0.92896 1.22373 1.00914 1.01504 0.95138 1.23014 0.87537 0.94979 0.99768 1.67725 1.28682 1.08738 1.16896 1.23112 0.97887 0.95171 0.89024 1.22341 0.93575 1.02169 1.02034 1.21614 0.96673 0.95756 0.96955 0.90395 0.84204 0.76423 0.77193 0.85286 0.80122 0.79524 0.84215 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.05 10.93 21.81 0.24 -42.81 16 2 C 0.03 1.72 5.18 85.22 0.44 2.16 16 3 Si 0.98 37.56 29.59 68.60 2.03 39.59 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.49 -25.54 9.06 23.40 0.21 -25.33 16 8 H 0.08 4.02 7.90 -2.91 -0.02 4.00 16 9 C 0.00 -0.22 5.58 -21.21 -0.12 -0.34 16 10 C 0.02 0.77 10.95 85.40 0.94 1.71 16 11 N -0.54 -25.37 10.35 -190.59 -1.97 -27.34 16 12 C 0.31 13.34 7.70 133.70 1.03 14.37 16 13 N -0.85 -28.40 8.64 -54.81 -0.47 -28.87 16 14 C -0.17 -7.39 5.54 -19.87 -0.11 -7.50 16 15 C 0.02 0.82 5.08 -19.85 -0.10 0.71 16 16 C -0.18 -6.03 9.67 22.59 0.22 -5.81 16 17 C 0.10 2.93 11.17 84.60 0.95 3.88 16 18 N -0.51 -14.82 10.35 -196.15 -2.03 -16.85 16 19 C 0.10 2.76 11.17 84.61 0.95 3.71 16 20 C -0.18 -5.57 7.85 22.59 0.18 -5.39 16 21 C -0.08 -4.22 8.31 23.10 0.19 -4.03 16 22 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 23 H 0.14 6.43 8.06 -2.91 -0.02 6.41 16 24 H 0.40 11.73 5.92 -92.71 -0.55 11.18 16 25 H 0.40 11.79 8.95 -92.70 -0.83 10.96 16 26 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 27 H 0.18 3.89 8.06 -2.91 -0.02 3.86 16 28 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 29 H 0.14 4.04 7.56 -2.91 -0.02 4.02 16 30 H 0.12 6.27 6.21 -2.91 -0.02 6.25 16 Total: -1.00 -60.72 265.51 2.37 -58.34 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.18 Total: 39.81 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 4.77 Total: -21.88 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -4.24 Total: -115.88 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -60.72 2.37 -58.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309239478.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.558 kcal (2) G-P(sol) polarization free energy of solvation -60.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds