Wall clock time and date at job start Mon Mar 30 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40274 * 119.84123 * 297.02731 * 3 2 1 5 5 C 1.36205 * 120.37441 * 179.97438 * 4 3 2 6 6 C 1.39897 * 119.96935 * 0.04116 * 5 4 3 7 7 C 1.46306 * 133.82284 * 179.97438 * 6 5 4 8 8 C 1.34423 * 107.03301 * 180.02562 * 7 6 5 9 9 C 1.50697 * 125.01461 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47188 * 205.02898 * 9 8 7 11 11 N 1.46905 * 109.47125 * 325.02677 * 9 8 7 12 12 C 1.50703 * 109.47094 * 85.02604 * 9 8 7 13 13 H 1.08000 * 119.99934 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99701 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00608 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99602 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47141 * 90.00118 * 16 14 12 18 18 H 1.48505 * 109.46875 * 210.00255 * 16 14 12 19 19 H 1.48499 * 109.47153 * 329.99723 * 16 14 12 20 20 N 1.36634 * 109.96837 * 0.23282 * 8 7 6 21 21 H 0.96998 * 125.07245 * 179.73324 * 20 8 7 22 22 C 1.37820 * 109.85658 * 359.61408 * 20 8 7 23 23 C 1.38708 * 133.36446 * 180.09913 * 22 20 8 24 24 H 1.07998 * 119.81039 * 0.02562 * 4 3 2 25 25 H 1.08003 * 120.01323 * 180.02562 * 5 4 3 26 26 H 1.07999 * 126.48105 * 359.97438 * 7 6 5 27 27 H 1.00901 * 110.99869 * 296.04907 * 11 9 8 28 28 H 1.00896 * 110.99543 * 60.00030 * 11 9 8 29 29 H 0.96991 * 120.00497 * 180.02562 * 15 14 12 30 30 H 1.07999 * 120.17208 * 0.32363 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2662 -0.5520 1.0839 5 6 4.6282 -0.5576 1.0949 6 6 5.3381 -0.0092 0.0213 7 6 6.7617 0.1447 -0.2789 8 6 6.8485 0.7551 -1.4734 9 6 8.1359 1.1123 -2.1704 10 1 7.9621 1.9472 -2.8491 11 7 9.1435 1.4946 -1.1720 12 6 8.6302 -0.0769 -2.9530 13 1 8.0679 -0.9990 -2.9467 14 6 9.7995 0.0126 -3.6780 15 7 10.4839 1.1356 -3.6861 16 14 10.4118 -1.4613 -4.6487 17 1 9.8488 -1.4179 -6.0221 18 1 11.8947 -1.4256 -4.7201 19 1 9.9787 -2.7120 -3.9754 20 7 5.5971 1.0090 -1.9596 21 1 5.4053 1.4458 -2.8042 22 6 4.6479 0.5495 -1.0723 23 6 3.2608 0.5510 -1.0759 24 1 2.7207 -0.9761 1.9139 25 1 5.1599 -0.9849 1.9322 26 1 7.5867 -0.1715 0.3422 27 1 8.8643 2.3286 -0.6775 28 1 9.3224 0.7366 -0.5304 29 1 11.3063 1.1988 -4.1964 30 1 2.7207 0.9762 -1.9089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309250824.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:31 Heat of formation + Delta-G solvation = 82.688292 kcal Electronic energy + Delta-G solvation = -15709.440035 eV Core-core repulsion = 13083.854325 eV Total energy + Delta-G solvation = -2625.585711 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00837 -37.72238 -35.95336 -34.35690 -31.95065 -31.43624 -29.38346 -28.36357 -26.29470 -23.61316 -22.34540 -21.53175 -19.65380 -18.59915 -16.70089 -16.53792 -15.91466 -14.71060 -14.59045 -14.37248 -14.22059 -13.76679 -13.59793 -13.49951 -13.12030 -12.60694 -12.52773 -12.37844 -11.80913 -11.36423 -11.16627 -10.91181 -10.88333 -10.75231 -10.05177 -9.59103 -9.30726 -8.59388 -7.95899 -7.52618 -7.23839 -6.05183 -4.22173 0.87050 1.59757 2.67998 2.93992 3.24789 3.31667 3.33419 3.40126 3.44189 4.08141 4.10345 4.36861 4.83968 5.06092 5.20340 5.30186 5.45545 5.55021 5.80208 5.98218 6.09142 6.15286 6.26732 6.40939 6.60435 6.77522 6.92960 7.23450 7.49416 7.52980 7.73700 7.85785 7.97293 8.41059 8.79576 8.92828 9.48342 10.98833 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.040328 B = 0.005101 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.131940 B = 5487.806426 C = 5667.270696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.270 3.730 3 C -0.041 4.041 4 C -0.106 4.106 5 C -0.081 4.081 6 C -0.065 4.065 7 C -0.243 4.243 8 C 0.126 3.874 9 C 0.272 3.728 10 H 0.049 0.951 11 N -0.799 5.799 12 C -0.537 4.537 13 H 0.057 0.943 14 C 0.086 3.914 15 N -0.844 5.844 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.273 1.273 20 N -0.584 5.584 21 H 0.416 0.584 22 C 0.074 3.926 23 C -0.064 4.064 24 H 0.125 0.875 25 H 0.128 0.872 26 H 0.143 0.857 27 H 0.303 0.697 28 H 0.325 0.675 29 H 0.259 0.741 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 -0.479 6.342 10.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.045 4.045 3 C -0.046 4.046 4 C -0.127 4.127 5 C -0.100 4.100 6 C -0.071 4.071 7 C -0.266 4.266 8 C 0.012 3.988 9 C 0.161 3.839 10 H 0.067 0.933 11 N -0.324 5.324 12 C -0.576 4.576 13 H 0.076 0.924 14 C -0.122 4.122 15 N -0.478 5.478 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.198 1.198 20 N -0.186 5.186 21 H 0.253 0.747 22 C -0.034 4.034 23 C -0.088 4.088 24 H 0.143 0.857 25 H 0.145 0.855 26 H 0.161 0.839 27 H 0.113 0.887 28 H 0.138 0.862 29 H 0.069 0.931 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.996 -0.212 5.536 10.565 hybrid contribution -0.068 -0.815 -0.280 0.865 sum -9.065 -1.028 5.256 10.528 Atomic orbital electron populations 1.81209 1.12197 1.09943 1.08440 1.25751 0.92637 0.92949 0.93115 1.15425 0.83612 1.07822 0.97708 1.20402 0.93927 1.01153 0.97250 1.20102 0.92838 0.99512 0.97500 1.19512 0.93996 0.99665 0.93958 1.21321 0.93464 1.12436 0.99385 1.23231 0.87617 0.94183 0.93721 1.18070 0.79062 0.97167 0.89619 0.93343 1.59257 1.46835 1.06705 1.19635 1.20748 1.09146 0.97506 1.30163 0.92443 1.24928 0.96167 0.95571 0.95503 1.70082 1.14766 1.24804 1.38149 0.86670 0.78072 0.83318 0.80299 1.20726 1.21093 1.19818 1.42022 1.04568 1.52178 1.19796 0.74724 1.18005 0.90072 1.02686 0.92598 1.19861 0.90443 1.00595 0.97896 0.85731 0.85457 0.83931 0.88689 0.86240 0.93135 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.65 18.54 41.84 0.78 -5.87 16 2 C 0.27 3.59 15.30 -22.47 -0.34 3.25 16 3 C -0.04 -0.51 5.74 -106.81 -0.61 -1.13 16 4 C -0.11 -1.24 9.67 -39.55 -0.38 -1.62 16 5 C -0.08 -1.03 10.03 -39.69 -0.40 -1.43 16 6 C -0.06 -1.01 6.37 -105.04 -0.67 -1.68 16 7 C -0.24 -4.18 10.33 -37.69 -0.39 -4.57 16 8 C 0.13 2.32 6.07 -81.80 -0.50 1.82 16 9 C 0.27 5.93 3.13 -70.01 -0.22 5.71 16 10 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 11 N -0.80 -16.64 8.37 -6.65 -0.06 -16.69 16 12 C -0.54 -13.40 8.71 -34.44 -0.30 -13.70 16 13 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.09 2.22 5.39 -17.82 -0.10 2.12 16 15 N -0.84 -22.76 12.77 55.43 0.71 -22.05 16 16 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 N -0.58 -9.31 6.07 -6.98 -0.04 -9.35 16 21 H 0.42 5.73 8.96 -40.82 -0.37 5.36 16 22 C 0.07 1.12 7.26 -84.00 -0.61 0.51 16 23 C -0.06 -0.83 9.77 -39.01 -0.38 -1.21 16 24 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 25 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 26 H 0.14 2.32 7.39 -52.49 -0.39 1.94 16 27 H 0.30 5.57 9.06 -39.29 -0.36 5.22 16 28 H 0.32 6.45 7.93 -39.29 -0.31 6.14 16 29 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 276.09 15.07 4.16 4.16 Total: -1.00 -27.99 276.09 -7.03 -35.01 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -2.65 Total: 11.69 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -4.90 Total: -11.93 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 1.39 Total: -53.97 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.99 -7.03 -35.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309250824.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.702 kcal (2) G-P(sol) polarization free energy of solvation -27.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds