Wall clock time and date at job start Mon Mar 30 2020 03:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40274 * 119.84123 * 297.02731 * 3 2 1 5 5 C 1.36205 * 120.37441 * 179.97438 * 4 3 2 6 6 C 1.39897 * 119.96935 * 0.04116 * 5 4 3 7 7 C 1.46306 * 133.82284 * 179.97438 * 6 5 4 8 8 C 1.34423 * 107.03301 * 180.02562 * 7 6 5 9 9 C 1.50697 * 125.01461 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47188 * 205.02898 * 9 8 7 11 11 N 1.46905 * 109.47125 * 325.02677 * 9 8 7 12 12 C 1.50703 * 109.47094 * 85.02604 * 9 8 7 13 13 H 1.08000 * 119.99934 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99701 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00608 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99602 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47141 * 90.00118 * 16 14 12 18 18 H 1.48505 * 109.46875 * 210.00255 * 16 14 12 19 19 H 1.48499 * 109.47153 * 329.99723 * 16 14 12 20 20 N 1.36634 * 109.96837 * 0.23282 * 8 7 6 21 21 H 0.96998 * 125.07245 * 179.73324 * 20 8 7 22 22 C 1.37820 * 109.85658 * 359.61408 * 20 8 7 23 23 C 1.38708 * 133.36446 * 180.09913 * 22 20 8 24 24 H 1.07998 * 119.81039 * 0.02562 * 4 3 2 25 25 H 1.08003 * 120.01323 * 180.02562 * 5 4 3 26 26 H 1.07999 * 126.48105 * 359.97438 * 7 6 5 27 27 H 1.00901 * 110.99869 * 296.04907 * 11 9 8 28 28 H 1.00896 * 110.99543 * 60.00030 * 11 9 8 29 29 H 0.96991 * 120.00497 * 180.02562 * 15 14 12 30 30 H 1.07999 * 120.17208 * 0.32363 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2662 -0.5520 1.0839 5 6 4.6282 -0.5576 1.0949 6 6 5.3381 -0.0092 0.0213 7 6 6.7617 0.1447 -0.2789 8 6 6.8485 0.7551 -1.4734 9 6 8.1359 1.1123 -2.1704 10 1 7.9621 1.9472 -2.8491 11 7 9.1435 1.4946 -1.1720 12 6 8.6302 -0.0769 -2.9530 13 1 8.0679 -0.9990 -2.9467 14 6 9.7995 0.0126 -3.6780 15 7 10.4839 1.1356 -3.6861 16 14 10.4118 -1.4613 -4.6487 17 1 9.8488 -1.4179 -6.0221 18 1 11.8947 -1.4256 -4.7201 19 1 9.9787 -2.7120 -3.9754 20 7 5.5971 1.0090 -1.9596 21 1 5.4053 1.4458 -2.8042 22 6 4.6479 0.5495 -1.0723 23 6 3.2608 0.5510 -1.0759 24 1 2.7207 -0.9761 1.9139 25 1 5.1599 -0.9849 1.9322 26 1 7.5867 -0.1715 0.3422 27 1 8.8643 2.3286 -0.6775 28 1 9.3224 0.7366 -0.5304 29 1 11.3063 1.1988 -4.1964 30 1 2.7207 0.9762 -1.9089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309250824.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:30 Heat of formation + Delta-G solvation = 65.122371 kcal Electronic energy + Delta-G solvation = -15710.201751 eV Core-core repulsion = 13083.854325 eV Total energy + Delta-G solvation = -2626.347426 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.19926 -38.86299 -37.15484 -35.95188 -33.56824 -32.78712 -30.51935 -29.63163 -28.08620 -25.10890 -23.42887 -22.86909 -21.00067 -19.71198 -18.51805 -17.89795 -17.03600 -16.49191 -15.91698 -15.69397 -15.48314 -14.93362 -14.79915 -14.70217 -14.53335 -14.12124 -13.75267 -13.69247 -13.19841 -12.88169 -12.71166 -12.51882 -12.30049 -11.94903 -11.78756 -11.27920 -10.61441 -10.55273 -9.17039 -9.01207 -8.55141 -7.99545 -6.21688 -0.22561 0.56650 1.45188 1.48250 1.56062 1.60609 1.72352 2.16963 2.25658 2.50244 2.98837 3.04288 3.25690 3.81696 3.99096 4.20990 4.37236 4.42604 4.47344 4.69761 4.78560 4.97135 5.07246 5.25304 5.36777 5.53500 5.75416 5.80974 5.91877 6.11141 6.21979 6.46866 6.63687 6.70594 7.07384 7.24479 7.51720 9.02910 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.040328 B = 0.005101 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.131940 B = 5487.806426 C = 5667.270696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.290 3.710 3 C -0.032 4.032 4 C -0.095 4.095 5 C -0.077 4.077 6 C -0.087 4.087 7 C -0.240 4.240 8 C 0.099 3.901 9 C 0.279 3.721 10 H 0.022 0.978 11 N -0.809 5.809 12 C -0.543 4.543 13 H 0.047 0.953 14 C 0.042 3.958 15 N -0.875 5.875 16 Si 0.946 3.054 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.273 1.273 20 N -0.583 5.583 21 H 0.421 0.579 22 C 0.066 3.934 23 C -0.063 4.063 24 H 0.155 0.845 25 H 0.152 0.848 26 H 0.146 0.854 27 H 0.316 0.684 28 H 0.330 0.670 29 H 0.257 0.743 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.306 -1.439 7.433 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.024 4.024 3 C -0.037 4.037 4 C -0.117 4.117 5 C -0.095 4.095 6 C -0.093 4.093 7 C -0.265 4.265 8 C -0.014 4.014 9 C 0.168 3.832 10 H 0.040 0.960 11 N -0.336 5.336 12 C -0.582 4.582 13 H 0.065 0.935 14 C -0.163 4.163 15 N -0.511 5.511 16 Si 0.772 3.228 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.197 1.197 20 N -0.186 5.186 21 H 0.259 0.741 22 C -0.042 4.042 23 C -0.087 4.087 24 H 0.173 0.827 25 H 0.170 0.830 26 H 0.164 0.836 27 H 0.128 0.872 28 H 0.143 0.857 29 H 0.066 0.934 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.389 -1.174 6.625 12.378 hybrid contribution 0.218 -0.526 -0.534 0.781 sum -10.172 -1.700 6.091 11.977 Atomic orbital electron populations 1.81249 1.13059 1.10845 1.09375 1.25683 0.92428 0.92077 0.92220 1.15512 0.83171 1.07230 0.97809 1.20723 0.93604 0.99820 0.97516 1.20375 0.93253 0.98650 0.97251 1.19707 0.93192 1.01017 0.95341 1.21458 0.94787 1.11414 0.98792 1.22553 0.87385 0.96846 0.94595 1.17619 0.80986 0.95066 0.89570 0.96034 1.59066 1.47210 1.07523 1.19831 1.21018 1.08870 0.98065 1.30256 0.93487 1.25572 0.96556 0.97631 0.96495 1.70188 1.15155 1.26372 1.39358 0.85780 0.77360 0.80589 0.79074 1.20423 1.21093 1.19728 1.41903 1.04043 1.52387 1.20279 0.74061 1.18213 0.90717 1.02870 0.92358 1.20030 0.89606 1.00322 0.98699 0.82734 0.83036 0.83641 0.87247 0.85734 0.93374 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.00 18.54 19.00 0.35 -12.64 16 2 C 0.29 6.85 15.30 88.33 1.35 8.21 16 3 C -0.03 -0.71 5.74 -21.28 -0.12 -0.83 16 4 C -0.10 -1.85 9.67 22.29 0.22 -1.64 16 5 C -0.08 -1.71 10.03 22.20 0.22 -1.49 16 6 C -0.09 -2.53 6.37 -20.13 -0.13 -2.66 16 7 C -0.24 -8.13 10.33 23.50 0.24 -7.89 16 8 C 0.10 3.69 6.07 40.94 0.25 3.94 16 9 C 0.28 12.46 3.13 43.42 0.14 12.60 16 10 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 11 N -0.81 -34.26 8.37 -174.95 -1.46 -35.72 16 12 C -0.54 -27.56 8.71 25.60 0.22 -27.34 16 13 H 0.05 2.43 7.74 -2.91 -0.02 2.41 16 14 C 0.04 2.19 5.39 84.65 0.46 2.65 16 15 N -0.88 -48.00 12.77 21.45 0.27 -47.72 16 16 Si 0.95 41.50 29.54 68.60 2.03 43.53 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 N -0.58 -18.46 6.07 -175.98 -1.07 -19.53 16 21 H 0.42 11.70 8.96 -92.71 -0.83 10.87 16 22 C 0.07 1.88 7.26 38.96 0.28 2.16 16 23 C -0.06 -1.48 9.77 22.64 0.22 -1.25 16 24 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 25 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 26 H 0.15 4.66 7.39 -2.91 -0.02 4.64 16 27 H 0.32 11.79 9.06 -89.69 -0.81 10.98 16 28 H 0.33 13.22 7.93 -89.70 -0.71 12.51 16 29 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 30 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -59.39 276.09 2.33 -57.05 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -1.14 Total: 28.59 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 3.35 Total: -13.55 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -1.91 Total: -115.62 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -59.39 2.33 -57.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309250824.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.177 kcal (2) G-P(sol) polarization free energy of solvation -59.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds