Wall clock time and date at job start Mon Mar 30 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86800 * 119.99998 * 2 1 4 4 H 1.48495 * 109.47424 * 275.28156 * 3 2 1 5 5 H 1.48505 * 109.47346 * 35.28506 * 3 2 1 6 6 H 1.48509 * 109.47179 * 155.27944 * 3 2 1 7 7 C 1.40137 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00025 * 341.25341 * 7 2 1 9 9 C 1.41019 * 120.00146 * 161.25071 * 7 2 1 10 10 C 1.40820 * 121.05986 * 331.30359 * 9 7 2 11 11 C 1.38442 * 118.93360 * 180.29586 * 10 9 7 12 12 N 1.39045 * 119.41763 * 179.97438 * 11 10 9 13 13 N 1.32729 * 121.16460 * 359.97287 * 11 10 9 14 14 C 1.31704 * 122.40053 * 0.02562 * 13 11 10 15 15 C 1.39145 * 120.90194 * 0.02562 * 14 13 11 16 16 C 1.47834 * 120.63699 * 180.02562 * 15 14 13 17 17 C 1.40089 * 120.56949 * 309.97338 * 16 15 14 18 18 C 1.38311 * 118.28635 * 180.02562 * 17 16 15 19 19 C 1.38397 * 119.31840 * 0.02562 * 18 17 16 20 20 N 1.31931 * 121.09705 * 0.02562 * 19 18 17 21 21 C 1.31687 * 121.88197 * 359.64699 * 20 19 18 22 22 H 0.96999 * 120.00216 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.53911 * 0.24840 * 10 9 7 24 24 H 0.97004 * 120.00038 * 179.97438 * 12 11 10 25 25 H 0.97004 * 119.99917 * 359.97438 * 12 11 10 26 26 H 1.07993 * 119.55086 * 179.97438 * 14 13 11 27 27 H 1.07998 * 120.85598 * 0.02921 * 17 16 15 28 28 H 1.07999 * 120.34255 * 180.02562 * 18 17 16 29 29 H 1.08001 * 119.45040 * 180.02562 * 19 18 17 30 30 H 1.08005 * 119.72212 * 180.33651 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.3769 2.1109 -1.3941 5 1 1.4987 2.6179 0.8088 6 1 3.5899 1.4105 0.5855 7 6 2.0077 -1.2136 -0.0005 8 1 1.5107 -2.1242 0.2996 9 6 3.3617 -1.2459 -0.3931 10 6 3.8738 -0.3112 -1.3135 11 6 5.2087 -0.3871 -1.6727 12 7 5.7247 0.5304 -2.5811 13 7 6.0045 -1.3204 -1.1653 14 6 5.5777 -2.2184 -0.3016 15 6 4.2527 -2.2284 0.1230 16 6 3.7801 -3.2387 1.0932 17 6 4.0442 -4.5994 0.8905 18 6 3.5794 -5.5041 1.8278 19 6 2.8747 -5.0411 2.9252 20 7 2.6396 -3.7534 3.0902 21 6 3.0663 -2.8526 2.2297 22 1 -0.4850 0.8400 0.0004 23 1 3.2354 0.4523 -1.7330 24 1 6.6589 0.4851 -2.8385 25 1 5.1506 1.2157 -2.9575 26 1 6.2654 -2.9576 0.0818 27 1 4.5966 -4.9335 0.0246 28 1 3.7646 -6.5610 1.7046 29 1 2.5111 -5.7456 3.6586 30 1 2.8586 -1.8068 2.4021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309269274.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:11 Heat of formation + Delta-G solvation = 55.490377 kcal Electronic energy + Delta-G solvation = -16380.655406 eV Core-core repulsion = 13753.890305 eV Total energy + Delta-G solvation = -2626.765101 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.54161 -38.44188 -34.59746 -33.69892 -31.96245 -31.55189 -30.52567 -27.28856 -26.04340 -23.29384 -22.63276 -21.66327 -20.27751 -17.94780 -16.58162 -16.49356 -15.83332 -15.42929 -15.24842 -14.69343 -14.00123 -13.58385 -13.18420 -13.00786 -12.94182 -12.90119 -12.40580 -11.93608 -11.52035 -11.00561 -10.84295 -10.77644 -10.04756 -9.88596 -9.43663 -9.19257 -8.89109 -8.59527 -8.18532 -8.04314 -7.15101 -6.74900 -4.79090 1.66257 1.93344 2.58488 2.66446 3.00937 3.14271 3.23879 3.84821 4.38203 4.47596 4.53246 5.12335 5.28942 5.43360 5.62828 5.68320 5.72534 5.79729 6.26357 6.35529 6.42042 6.50101 6.64491 6.73929 6.88420 6.94049 7.19909 7.32187 7.52569 7.72218 8.00098 8.14372 8.33723 8.45399 8.58770 8.68416 9.38955 9.84659 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.019964 B = 0.010823 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.201327 B = 2586.537998 C = 3724.146533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.087 3.913 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.426 4.426 8 H 0.097 0.903 9 C 0.153 3.847 10 C -0.352 4.352 11 C 0.417 3.583 12 N -0.870 5.870 13 N -0.620 5.620 14 C 0.176 3.824 15 C -0.252 4.252 16 C -0.021 4.021 17 C -0.094 4.094 18 C -0.176 4.176 19 C 0.063 3.937 20 N -0.489 5.489 21 C 0.116 3.884 22 H 0.290 0.710 23 H 0.107 0.893 24 H 0.391 0.609 25 H 0.397 0.603 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -2.166 0.032 5.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.167 1.167 7 C -0.455 4.455 8 H 0.115 0.885 9 C 0.145 3.855 10 C -0.379 4.379 11 C 0.187 3.813 12 N -0.413 5.413 13 N -0.343 5.343 14 C 0.021 3.979 15 C -0.260 4.260 16 C -0.023 4.023 17 C -0.120 4.120 18 C -0.196 4.196 19 C -0.093 4.093 20 N -0.197 5.197 21 C -0.042 4.042 22 H 0.100 0.900 23 H 0.124 0.876 24 H 0.219 0.781 25 H 0.225 0.775 26 H 0.146 0.854 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.462 -1.852 0.546 5.794 hybrid contribution -0.194 0.679 -0.913 1.155 sum 5.268 -1.173 -0.367 5.409 Atomic orbital electron populations 1.69639 1.08336 1.30857 1.31950 1.26278 0.94703 1.02085 0.90491 0.86172 0.81255 0.79206 0.78780 1.19723 1.21768 1.16704 1.19504 0.92929 0.96331 1.36760 0.88467 1.17498 0.92277 0.88233 0.87519 1.20986 0.94928 1.10207 1.11760 1.17988 0.88696 0.87396 0.87227 1.42133 1.13621 1.35278 1.50264 1.66818 1.38159 1.09524 1.19758 1.21819 0.92308 0.93319 0.90455 1.19158 0.94861 1.04510 1.07438 1.19598 0.95868 0.92600 0.94266 1.21690 0.99130 0.92578 0.98598 1.21883 1.01267 1.00016 0.96451 1.22525 0.97423 0.92563 0.96779 1.67582 1.19238 1.02375 1.30543 1.23089 0.92870 0.99193 0.89078 0.89970 0.87566 0.78141 0.77458 0.85396 0.85691 0.85953 0.84065 0.82484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.84 13.92 55.56 0.77 -19.06 16 2 C 0.09 2.16 5.42 -17.32 -0.09 2.06 16 3 Si 0.92 19.91 24.54 -169.99 -4.17 15.74 16 4 H -0.27 -5.63 6.69 56.52 0.38 -5.26 16 5 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.24 -5.51 6.86 56.52 0.39 -5.13 16 7 C -0.43 -10.85 7.74 -37.82 -0.29 -11.14 16 8 H 0.10 2.66 7.04 -52.49 -0.37 2.29 16 9 C 0.15 3.70 5.14 -106.30 -0.55 3.15 16 10 C -0.35 -8.17 7.11 -38.53 -0.27 -8.45 16 11 C 0.42 8.99 7.72 -154.95 -1.20 7.79 16 12 N -0.87 -14.72 9.07 31.06 0.28 -14.44 16 13 N -0.62 -13.53 10.34 -12.31 -0.13 -13.66 16 14 C 0.18 3.70 10.70 -17.27 -0.18 3.52 16 15 C -0.25 -5.60 5.56 -104.07 -0.58 -6.18 16 16 C -0.02 -0.42 4.99 -104.75 -0.52 -0.94 16 17 C -0.09 -1.66 9.71 -38.86 -0.38 -2.03 16 18 C -0.18 -2.75 10.10 -39.50 -0.40 -3.15 16 19 C 0.06 1.06 11.17 -17.45 -0.19 0.87 16 20 N -0.49 -9.77 10.35 -12.86 -0.13 -9.90 16 21 C 0.12 2.44 9.33 -17.09 -0.16 2.28 16 22 H 0.29 6.59 8.29 -40.82 -0.34 6.25 16 23 H 0.11 2.43 4.70 -52.49 -0.25 2.18 16 24 H 0.39 5.76 8.95 -40.82 -0.37 5.40 16 25 H 0.40 5.87 8.81 -40.82 -0.36 5.51 16 26 H 0.13 2.32 8.05 -52.49 -0.42 1.90 16 27 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.16 3.44 7.39 -52.48 -0.39 3.05 16 LS Contribution 260.99 15.07 3.93 3.93 Total: -1.00 -28.16 260.99 -6.85 -35.02 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -2.59 Total: 14.59 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -4.82 Total: -12.22 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.79 Total: -57.06 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.17 Total: 15.74 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.16 -6.85 -35.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309269274.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.509 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds