Wall clock time and date at job start Mon Mar 30 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86800 * 119.99998 * 2 1 4 4 H 1.48495 * 109.47424 * 275.28156 * 3 2 1 5 5 H 1.48505 * 109.47346 * 35.28506 * 3 2 1 6 6 H 1.48509 * 109.47179 * 155.27944 * 3 2 1 7 7 C 1.40137 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00025 * 341.25341 * 7 2 1 9 9 C 1.41019 * 120.00146 * 161.25071 * 7 2 1 10 10 C 1.40820 * 121.05986 * 331.30359 * 9 7 2 11 11 C 1.38442 * 118.93360 * 180.29586 * 10 9 7 12 12 N 1.39045 * 119.41763 * 179.97438 * 11 10 9 13 13 N 1.32729 * 121.16460 * 359.97287 * 11 10 9 14 14 C 1.31704 * 122.40053 * 0.02562 * 13 11 10 15 15 C 1.39145 * 120.90194 * 0.02562 * 14 13 11 16 16 C 1.47834 * 120.63699 * 180.02562 * 15 14 13 17 17 C 1.40089 * 120.56949 * 309.97338 * 16 15 14 18 18 C 1.38311 * 118.28635 * 180.02562 * 17 16 15 19 19 C 1.38397 * 119.31840 * 0.02562 * 18 17 16 20 20 N 1.31931 * 121.09705 * 0.02562 * 19 18 17 21 21 C 1.31687 * 121.88197 * 359.64699 * 20 19 18 22 22 H 0.96999 * 120.00216 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.53911 * 0.24840 * 10 9 7 24 24 H 0.97004 * 120.00038 * 179.97438 * 12 11 10 25 25 H 0.97004 * 119.99917 * 359.97438 * 12 11 10 26 26 H 1.07993 * 119.55086 * 179.97438 * 14 13 11 27 27 H 1.07998 * 120.85598 * 0.02921 * 17 16 15 28 28 H 1.07999 * 120.34255 * 180.02562 * 18 17 16 29 29 H 1.08001 * 119.45040 * 180.02562 * 19 18 17 30 30 H 1.08005 * 119.72212 * 180.33651 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.3769 2.1109 -1.3941 5 1 1.4987 2.6179 0.8088 6 1 3.5899 1.4105 0.5855 7 6 2.0077 -1.2136 -0.0005 8 1 1.5107 -2.1242 0.2996 9 6 3.3617 -1.2459 -0.3931 10 6 3.8738 -0.3112 -1.3135 11 6 5.2087 -0.3871 -1.6727 12 7 5.7247 0.5304 -2.5811 13 7 6.0045 -1.3204 -1.1653 14 6 5.5777 -2.2184 -0.3016 15 6 4.2527 -2.2284 0.1230 16 6 3.7801 -3.2387 1.0932 17 6 4.0442 -4.5994 0.8905 18 6 3.5794 -5.5041 1.8278 19 6 2.8747 -5.0411 2.9252 20 7 2.6396 -3.7534 3.0902 21 6 3.0663 -2.8526 2.2297 22 1 -0.4850 0.8400 0.0004 23 1 3.2354 0.4523 -1.7330 24 1 6.6589 0.4851 -2.8385 25 1 5.1506 1.2157 -2.9575 26 1 6.2654 -2.9576 0.0818 27 1 4.5966 -4.9335 0.0246 28 1 3.7646 -6.5610 1.7046 29 1 2.5111 -5.7456 3.6586 30 1 2.8586 -1.8068 2.4021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309269274.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:11 Heat of formation + Delta-G solvation = 36.259007 kcal Electronic energy + Delta-G solvation = -16381.489341 eV Core-core repulsion = 13753.890305 eV Total energy + Delta-G solvation = -2627.599035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.07870 -40.04367 -36.30226 -35.37204 -33.53307 -33.13883 -32.05744 -28.86397 -27.86113 -24.83726 -24.12396 -23.32414 -21.90596 -19.73985 -18.18195 -17.92845 -17.46396 -16.98223 -16.72577 -16.38684 -15.64000 -15.14648 -14.83645 -14.67504 -14.50291 -14.42582 -13.82540 -13.63118 -13.11848 -12.79348 -12.62545 -12.38830 -11.74325 -11.56429 -11.18291 -10.64083 -10.38314 -10.18806 -9.92532 -9.63152 -8.99893 -8.34100 -6.67417 0.17774 0.51854 0.80581 1.00877 1.23628 1.42405 1.47470 2.07893 2.65232 2.92747 3.06367 3.55553 3.74827 4.08075 4.18248 4.21334 4.27661 4.43087 4.64210 4.69005 4.88032 4.97832 5.06477 5.15291 5.31247 5.34729 5.60215 5.69433 5.98967 6.02372 6.19618 6.46329 6.70703 6.74457 6.88620 7.23884 7.73878 8.06046 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.019964 B = 0.010823 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.201327 B = 2586.537998 C = 3724.146533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.056 3.944 3 Si 0.970 3.030 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.450 4.450 8 H 0.062 0.938 9 C 0.139 3.861 10 C -0.369 4.369 11 C 0.414 3.586 12 N -0.850 5.850 13 N -0.621 5.621 14 C 0.176 3.824 15 C -0.259 4.259 16 C -0.045 4.045 17 C -0.092 4.092 18 C -0.160 4.160 19 C 0.062 3.938 20 N -0.514 5.514 21 C 0.093 3.907 22 H 0.298 0.702 23 H 0.107 0.893 24 H 0.405 0.595 25 H 0.409 0.591 26 H 0.161 0.839 27 H 0.147 0.853 28 H 0.171 0.829 29 H 0.180 0.820 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.303 -3.295 -0.444 8.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.163 4.163 3 Si 0.794 3.206 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.479 4.479 8 H 0.080 0.920 9 C 0.131 3.869 10 C -0.396 4.396 11 C 0.182 3.818 12 N -0.395 5.395 13 N -0.344 5.344 14 C 0.021 3.979 15 C -0.267 4.267 16 C -0.047 4.047 17 C -0.118 4.118 18 C -0.179 4.179 19 C -0.094 4.094 20 N -0.223 5.223 21 C -0.063 4.063 22 H 0.109 0.891 23 H 0.124 0.876 24 H 0.235 0.765 25 H 0.240 0.760 26 H 0.178 0.822 27 H 0.165 0.835 28 H 0.188 0.812 29 H 0.197 0.803 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.391 -2.951 0.039 7.959 hybrid contribution -0.668 0.833 -0.736 1.298 sum 6.723 -2.117 -0.697 7.083 Atomic orbital electron populations 1.69659 1.09302 1.31972 1.34107 1.26868 0.95214 1.04247 0.89973 0.85410 0.79192 0.76427 0.79586 1.17830 1.20650 1.18512 1.19322 0.93908 0.95615 1.39091 0.91988 1.17729 0.92116 0.89341 0.87700 1.21074 0.95974 1.10417 1.12176 1.18180 0.88301 0.87836 0.87528 1.42039 1.14588 1.34219 1.48631 1.66963 1.38017 1.09583 1.19861 1.22288 0.92226 0.93534 0.89841 1.19412 0.95257 1.04466 1.07535 1.19596 0.97250 0.93907 0.93986 1.21998 0.98728 0.91405 0.99678 1.22350 0.98930 1.01996 0.94657 1.23259 0.96487 0.91776 0.97922 1.67542 1.20027 1.03901 1.30857 1.22756 0.94555 0.98585 0.90446 0.89127 0.87566 0.76493 0.76048 0.82229 0.83492 0.81197 0.80318 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.54 13.92 21.86 0.30 -43.24 16 2 C 0.06 2.86 5.42 85.32 0.46 3.33 16 3 Si 0.97 41.73 24.54 68.60 1.68 43.41 16 4 H -0.25 -10.03 6.69 99.48 0.67 -9.37 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.26 -11.83 6.86 99.48 0.68 -11.14 16 7 C -0.45 -24.13 7.74 23.41 0.18 -23.95 16 8 H 0.06 3.66 7.04 -2.91 -0.02 3.64 16 9 C 0.14 6.90 5.14 -20.95 -0.11 6.79 16 10 C -0.37 -17.07 7.11 22.95 0.16 -16.91 16 11 C 0.41 17.18 7.72 132.78 1.03 18.21 16 12 N -0.85 -26.57 9.07 -55.66 -0.50 -27.08 16 13 N -0.62 -25.85 10.34 -192.85 -1.99 -27.84 16 14 C 0.18 7.11 10.70 84.93 0.91 8.02 16 15 C -0.26 -11.56 5.56 -19.51 -0.11 -11.67 16 16 C -0.04 -1.84 4.99 -19.95 -0.10 -1.94 16 17 C -0.09 -3.04 9.71 22.74 0.22 -2.81 16 18 C -0.16 -4.41 10.10 22.33 0.23 -4.18 16 19 C 0.06 1.93 11.17 84.72 0.95 2.88 16 20 N -0.51 -20.63 10.35 -194.61 -2.01 -22.64 16 21 C 0.09 4.09 9.33 85.06 0.79 4.88 16 22 H 0.30 14.05 8.29 -92.71 -0.77 13.28 16 23 H 0.11 4.82 4.70 -2.91 -0.01 4.80 16 24 H 0.41 10.68 8.95 -92.71 -0.83 9.85 16 25 H 0.41 11.00 8.81 -92.71 -0.82 10.18 16 26 H 0.16 5.32 8.05 -2.91 -0.02 5.29 16 27 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 28 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 29 H 0.18 4.09 8.06 -2.91 -0.02 4.06 16 30 H 0.13 6.20 7.39 -2.91 -0.02 6.18 16 Total: -1.00 -63.05 260.99 1.58 -61.47 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.51 Total: 33.27 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 4.61 Total: -17.35 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -4.21 Total: -120.80 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.68 Total: 43.41 kcal Total: -63.05 1.58 -61.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309269274.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.729 kcal (2) G-P(sol) polarization free energy of solvation -63.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds