Wall clock time and date at job start Mon Mar 30 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30711 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48500 * 109.47117 * 185.20386 * 3 2 1 5 5 H 1.48504 * 109.47074 * 305.20555 * 3 2 1 6 6 H 1.48504 * 109.46998 * 65.20311 * 3 2 1 7 7 C 1.40124 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00127 * 26.67726 * 7 2 1 9 9 C 1.40717 * 119.99745 * 206.95999 * 7 2 1 10 10 N 1.33763 * 119.89781 * 9.07235 * 9 7 2 11 11 C 1.31870 * 121.53459 * 179.97438 * 10 9 7 12 12 N 1.38673 * 119.42071 * 179.97438 * 11 10 9 13 13 C 1.40077 * 121.15519 * 0.02562 * 11 10 9 14 14 C 1.38011 * 119.67119 * 359.97438 * 13 11 10 15 15 C 1.39897 * 118.56883 * 359.74164 * 14 13 11 16 16 C 1.47751 * 120.57208 * 180.27257 * 15 14 13 17 17 C 1.40153 * 120.56723 * 310.25108 * 16 15 14 18 18 C 1.38299 * 118.27767 * 180.02562 * 17 16 15 19 19 C 1.38403 * 119.32183 * 0.02562 * 18 17 16 20 20 N 1.31943 * 121.11396 * 0.02562 * 19 18 17 21 21 C 1.31672 * 121.88598 * 359.70079 * 20 19 18 22 22 H 0.97001 * 120.00423 * 180.02562 * 1 2 3 23 23 H 0.97004 * 119.99879 * 359.97438 * 12 11 10 24 24 H 0.96996 * 120.00053 * 180.02562 * 12 11 10 25 25 H 1.08007 * 120.16171 * 179.97438 * 13 11 10 26 26 H 1.07999 * 120.71791 * 180.02562 * 14 13 11 27 27 H 1.07999 * 120.86255 * 0.02877 * 17 16 15 28 28 H 1.08000 * 120.33376 * 180.02562 * 18 17 16 29 29 H 1.08001 * 119.44411 * 179.97438 * 19 18 17 30 30 H 1.08001 * 119.73227 * 180.29004 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.6961 1.3492 -0.1270 5 1 1.7896 2.4500 -1.1440 6 1 1.9801 2.3400 1.2710 7 6 2.0077 -1.2135 -0.0005 8 1 1.5539 -2.0989 -0.4209 9 6 3.3001 -1.2800 0.5519 10 7 3.7869 -0.2391 1.2367 11 6 4.9933 -0.2667 1.7684 12 7 5.4543 0.8375 2.4693 13 6 5.8177 -1.3915 1.6367 14 6 5.3643 -2.4931 0.9398 15 6 4.0802 -2.4524 0.3862 16 6 3.5481 -3.6091 -0.3634 17 6 4.3040 -4.2084 -1.3802 18 6 3.7597 -5.2880 -2.0516 19 6 2.4982 -5.7376 -1.7022 20 7 1.8082 -5.1535 -0.7411 21 6 2.2842 -4.1263 -0.0688 22 1 -0.4851 -0.8400 0.0004 23 1 4.8908 1.6213 2.5647 24 1 6.3404 0.8264 2.8635 25 1 6.8033 -1.3966 2.0784 26 1 5.9856 -3.3694 0.8283 27 1 5.2860 -3.8368 -1.6328 28 1 4.3134 -5.7752 -2.8406 29 1 2.0711 -6.5803 -2.2255 30 1 1.6912 -3.6776 0.7144 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309534844.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:04 Heat of formation + Delta-G solvation = 52.042244 kcal Electronic energy + Delta-G solvation = -16413.854764 eV Core-core repulsion = 13786.940141 eV Total energy + Delta-G solvation = -2626.914623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.56577 -38.38833 -34.64323 -33.51849 -31.98962 -31.16574 -30.67008 -27.88289 -25.51723 -23.10492 -22.55770 -21.40824 -20.35244 -18.56543 -16.60344 -16.42863 -15.94266 -15.35893 -15.35343 -14.33761 -13.95368 -13.50629 -13.23105 -12.91271 -12.74771 -12.49469 -12.19260 -11.98212 -11.70663 -11.04371 -10.80090 -10.25332 -10.09732 -9.77566 -9.20819 -9.10444 -8.83771 -8.57131 -8.22764 -7.79774 -7.35710 -6.82300 -4.80410 1.65430 1.89514 2.68173 2.83622 3.40843 3.50786 3.83988 4.27135 4.42201 4.44258 4.56329 5.07315 5.35630 5.50679 5.59798 5.66100 5.75896 5.87649 6.21473 6.31286 6.40877 6.45337 6.58746 6.73258 6.91796 7.15474 7.36748 7.40427 7.47031 7.59732 7.89179 8.02132 8.30902 8.39018 8.61600 8.67649 9.62528 9.84808 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.010408 C = 0.007521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.698366 B = 2689.529264 C = 3722.063865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.059 3.941 3 Si 1.113 2.887 4 H -0.254 1.254 5 H -0.318 1.318 6 H -0.285 1.285 7 C -0.476 4.476 8 H 0.096 0.904 9 C 0.298 3.702 10 N -0.610 5.610 11 C 0.443 3.557 12 N -0.865 5.865 13 C -0.365 4.365 14 C 0.010 3.990 15 C -0.275 4.275 16 C -0.010 4.010 17 C -0.098 4.098 18 C -0.173 4.173 19 C 0.057 3.943 20 N -0.488 5.488 21 C 0.098 3.902 22 H 0.289 0.711 23 H 0.393 0.607 24 H 0.397 0.603 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.742 -2.830 -0.240 8.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.167 4.167 3 Si 0.942 3.058 4 H -0.179 1.179 5 H -0.249 1.249 6 H -0.211 1.211 7 C -0.507 4.507 8 H 0.114 0.886 9 C 0.176 3.824 10 N -0.337 5.337 11 C 0.200 3.800 12 N -0.409 5.409 13 C -0.391 4.391 14 C -0.013 4.013 15 C -0.280 4.280 16 C -0.013 4.013 17 C -0.124 4.124 18 C -0.193 4.193 19 C -0.099 4.099 20 N -0.196 5.196 21 C -0.060 4.060 22 H 0.101 0.899 23 H 0.221 0.779 24 H 0.224 0.776 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.038 -1.011 -0.015 6.122 hybrid contribution 1.611 -1.932 -0.129 2.519 sum 7.649 -2.942 -0.144 8.197 Atomic orbital electron populations 1.70581 1.08731 1.33320 1.27540 1.27663 0.94959 1.05955 0.88091 0.82799 0.76970 0.70513 0.75540 1.17930 1.24859 1.21076 1.20869 0.98476 0.98876 1.32439 0.88603 1.17959 0.91317 0.85481 0.87680 1.67086 1.13983 1.30463 1.22183 1.18260 0.89319 0.85717 0.86713 1.42110 1.19999 1.16904 1.61921 1.20369 1.01964 0.97039 1.19703 1.20681 0.93013 0.95494 0.92156 1.18839 0.97077 0.96909 1.15159 1.19626 0.94158 0.93683 0.93802 1.21686 1.00073 0.95679 0.94925 1.21889 0.97493 0.98491 1.01387 1.22488 0.92105 0.99498 0.95823 1.67543 1.35834 1.09331 1.06880 1.23068 0.93723 0.91326 0.97841 0.89914 0.77934 0.77558 0.88279 0.88136 0.85775 0.85965 0.84063 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.53 13.65 55.56 0.76 -19.77 16 2 C 0.06 1.54 5.46 -17.32 -0.09 1.44 16 3 Si 1.11 25.73 26.83 -169.99 -4.56 21.17 16 4 H -0.25 -5.94 5.91 56.52 0.33 -5.61 16 5 H -0.32 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.48 -12.40 8.42 -37.94 -0.32 -12.72 16 8 H 0.10 2.53 5.12 -52.48 -0.27 2.26 16 9 C 0.30 7.48 6.19 -84.73 -0.52 6.96 16 10 N -0.61 -14.77 5.42 -10.14 -0.05 -14.83 16 11 C 0.44 9.42 7.74 -155.43 -1.20 8.22 16 12 N -0.87 -14.25 9.06 31.16 0.28 -13.97 16 13 C -0.37 -7.34 9.92 -38.98 -0.39 -7.73 16 14 C 0.01 0.22 9.67 -39.04 -0.38 -0.16 16 15 C -0.27 -6.26 5.56 -104.03 -0.58 -6.84 16 16 C -0.01 -0.21 5.08 -104.74 -0.53 -0.74 16 17 C -0.10 -1.78 9.71 -38.84 -0.38 -2.16 16 18 C -0.17 -2.77 10.10 -39.50 -0.40 -3.17 16 19 C 0.06 0.98 11.17 -17.44 -0.19 0.78 16 20 N -0.49 -9.86 10.35 -12.85 -0.13 -10.00 16 21 C 0.10 2.11 8.74 -17.07 -0.15 1.96 16 22 H 0.29 7.36 8.72 -40.82 -0.36 7.01 16 23 H 0.39 6.17 8.95 -40.82 -0.37 5.81 16 24 H 0.40 5.09 8.81 -40.82 -0.36 4.73 16 25 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 26 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 30 H 0.16 3.46 7.15 -52.49 -0.38 3.08 16 LS Contribution 262.22 15.07 3.95 3.95 Total: -1.00 -28.69 262.22 -7.59 -36.28 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -2.70 Total: 11.32 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -5.14 Total: -14.16 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.85 Total: -58.56 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -4.56 Total: 21.17 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.69 -7.59 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309534844.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.322 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds