Wall clock time and date at job start Mon Mar 30 2020 03:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30711 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48500 * 109.47117 * 185.20386 * 3 2 1 5 5 H 1.48504 * 109.47074 * 305.20555 * 3 2 1 6 6 H 1.48504 * 109.46998 * 65.20311 * 3 2 1 7 7 C 1.40124 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00127 * 26.67726 * 7 2 1 9 9 C 1.40717 * 119.99745 * 206.95999 * 7 2 1 10 10 N 1.33763 * 119.89781 * 9.07235 * 9 7 2 11 11 C 1.31870 * 121.53459 * 179.97438 * 10 9 7 12 12 N 1.38673 * 119.42071 * 179.97438 * 11 10 9 13 13 C 1.40077 * 121.15519 * 0.02562 * 11 10 9 14 14 C 1.38011 * 119.67119 * 359.97438 * 13 11 10 15 15 C 1.39897 * 118.56883 * 359.74164 * 14 13 11 16 16 C 1.47751 * 120.57208 * 180.27257 * 15 14 13 17 17 C 1.40153 * 120.56723 * 310.25108 * 16 15 14 18 18 C 1.38299 * 118.27767 * 180.02562 * 17 16 15 19 19 C 1.38403 * 119.32183 * 0.02562 * 18 17 16 20 20 N 1.31943 * 121.11396 * 0.02562 * 19 18 17 21 21 C 1.31672 * 121.88598 * 359.70079 * 20 19 18 22 22 H 0.97001 * 120.00423 * 180.02562 * 1 2 3 23 23 H 0.97004 * 119.99879 * 359.97438 * 12 11 10 24 24 H 0.96996 * 120.00053 * 180.02562 * 12 11 10 25 25 H 1.08007 * 120.16171 * 179.97438 * 13 11 10 26 26 H 1.07999 * 120.71791 * 180.02562 * 14 13 11 27 27 H 1.07999 * 120.86255 * 0.02877 * 17 16 15 28 28 H 1.08000 * 120.33376 * 180.02562 * 18 17 16 29 29 H 1.08001 * 119.44411 * 179.97438 * 19 18 17 30 30 H 1.08001 * 119.73227 * 180.29004 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.6961 1.3492 -0.1270 5 1 1.7896 2.4500 -1.1440 6 1 1.9801 2.3400 1.2710 7 6 2.0077 -1.2135 -0.0005 8 1 1.5539 -2.0989 -0.4209 9 6 3.3001 -1.2800 0.5519 10 7 3.7869 -0.2391 1.2367 11 6 4.9933 -0.2667 1.7684 12 7 5.4543 0.8375 2.4693 13 6 5.8177 -1.3915 1.6367 14 6 5.3643 -2.4931 0.9398 15 6 4.0802 -2.4524 0.3862 16 6 3.5481 -3.6091 -0.3634 17 6 4.3040 -4.2084 -1.3802 18 6 3.7597 -5.2880 -2.0516 19 6 2.4982 -5.7376 -1.7022 20 7 1.8082 -5.1535 -0.7411 21 6 2.2842 -4.1263 -0.0688 22 1 -0.4851 -0.8400 0.0004 23 1 4.8908 1.6213 2.5647 24 1 6.3404 0.8264 2.8635 25 1 6.8033 -1.3966 2.0784 26 1 5.9856 -3.3694 0.8283 27 1 5.2860 -3.8368 -1.6328 28 1 4.3134 -5.7752 -2.8406 29 1 2.0711 -6.5803 -2.2255 30 1 1.6912 -3.6776 0.7144 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309534844.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:03 Heat of formation + Delta-G solvation = 33.672069 kcal Electronic energy + Delta-G solvation = -16414.651355 eV Core-core repulsion = 13786.940141 eV Total energy + Delta-G solvation = -2627.711213 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10212 -40.00708 -36.32149 -35.22370 -33.56668 -32.66460 -32.26359 -29.53811 -27.22716 -24.60399 -24.08296 -23.11536 -21.95069 -20.41921 -18.06723 -17.95340 -17.54895 -16.86332 -16.79424 -16.01003 -15.72894 -14.93746 -14.85258 -14.51770 -14.42080 -14.02338 -13.89756 -13.57329 -13.27696 -12.87597 -12.35015 -11.95501 -11.88133 -11.45416 -10.97261 -10.61866 -10.36592 -10.24244 -9.80670 -9.58162 -9.21161 -8.44512 -6.66365 0.17595 0.45726 0.90884 1.19039 1.54130 1.68166 1.99919 2.42768 2.63069 2.97992 3.06349 3.66697 3.71764 4.10605 4.12813 4.21295 4.35335 4.38894 4.66571 4.75568 4.86104 4.98127 5.05463 5.29842 5.40407 5.44435 5.55401 5.81707 5.89788 6.01076 6.05868 6.34177 6.60055 6.89257 6.99858 7.16946 7.83981 7.99399 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.010408 C = 0.007521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.698366 B = 2689.529264 C = 3722.063865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.031 3.969 3 Si 1.150 2.850 4 H -0.258 1.258 5 H -0.315 1.315 6 H -0.279 1.279 7 C -0.512 4.512 8 H 0.078 0.922 9 C 0.287 3.713 10 N -0.633 5.633 11 C 0.424 3.576 12 N -0.847 5.847 13 C -0.351 4.351 14 C 0.007 3.993 15 C -0.289 4.289 16 C -0.034 4.034 17 C -0.097 4.097 18 C -0.156 4.156 19 C 0.056 3.944 20 N -0.512 5.512 21 C 0.077 3.923 22 H 0.281 0.719 23 H 0.398 0.602 24 H 0.416 0.584 25 H 0.136 0.864 26 H 0.132 0.868 27 H 0.146 0.854 28 H 0.171 0.829 29 H 0.180 0.820 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.908 -3.751 -0.767 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.190 4.190 3 Si 0.976 3.024 4 H -0.183 1.183 5 H -0.246 1.246 6 H -0.204 1.204 7 C -0.543 4.543 8 H 0.096 0.904 9 C 0.163 3.837 10 N -0.361 5.361 11 C 0.181 3.819 12 N -0.392 5.392 13 C -0.376 4.376 14 C -0.017 4.017 15 C -0.294 4.294 16 C -0.037 4.037 17 C -0.123 4.123 18 C -0.176 4.176 19 C -0.100 4.100 20 N -0.221 5.221 21 C -0.080 4.080 22 H 0.092 0.908 23 H 0.227 0.773 24 H 0.248 0.752 25 H 0.153 0.847 26 H 0.150 0.850 27 H 0.164 0.836 28 H 0.189 0.811 29 H 0.197 0.803 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.242 -1.901 -0.495 9.448 hybrid contribution 0.859 -1.824 0.055 2.017 sum 10.100 -3.725 -0.440 10.774 Atomic orbital electron populations 1.70629 1.09152 1.32735 1.30777 1.28473 0.95145 1.07908 0.87430 0.82325 0.75867 0.68530 0.75724 1.18316 1.24601 1.20437 1.20762 0.99815 0.98517 1.35209 0.90449 1.18138 0.91331 0.86784 0.87467 1.67003 1.15627 1.30725 1.22778 1.18674 0.88836 0.87465 0.86924 1.42032 1.20927 1.15708 1.60547 1.20840 1.02991 0.96008 1.17797 1.21056 0.92499 0.96802 0.91346 1.19101 0.97904 0.96747 1.15694 1.19657 0.94532 0.94062 0.95425 1.21990 1.00625 0.95830 0.93852 1.22363 0.96931 0.97075 1.01194 1.23237 0.92572 0.99744 0.94483 1.67503 1.36975 1.09463 1.08160 1.22701 0.94168 0.92603 0.98489 0.90782 0.77333 0.75223 0.84664 0.85034 0.83630 0.81138 0.80267 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.00 13.65 21.86 0.30 -44.70 16 2 C 0.03 1.67 5.46 85.32 0.47 2.13 16 3 Si 1.15 53.39 26.83 68.60 1.84 55.23 16 4 H -0.26 -11.94 5.91 99.48 0.59 -11.36 16 5 H -0.32 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.51 -28.10 8.42 23.33 0.20 -27.90 16 8 H 0.08 4.42 5.12 -2.91 -0.01 4.40 16 9 C 0.29 14.69 6.19 40.33 0.25 14.94 16 10 N -0.63 -30.51 5.42 -185.99 -1.01 -31.52 16 11 C 0.42 17.13 7.74 133.56 1.03 18.17 16 12 N -0.85 -25.47 9.06 -55.33 -0.50 -25.97 16 13 C -0.35 -12.93 9.92 22.66 0.22 -12.70 16 14 C 0.01 0.27 9.67 22.62 0.22 0.48 16 15 C -0.29 -13.12 5.56 -19.48 -0.11 -13.23 16 16 C -0.03 -1.44 5.08 -19.94 -0.10 -1.54 16 17 C -0.10 -3.28 9.71 22.75 0.22 -3.06 16 18 C -0.16 -4.39 10.10 22.32 0.23 -4.17 16 19 C 0.06 1.78 11.17 84.72 0.95 2.73 16 20 N -0.51 -20.81 10.35 -194.57 -2.01 -22.82 16 21 C 0.08 3.43 8.74 85.07 0.74 4.18 16 22 H 0.28 15.45 8.72 -92.71 -0.81 14.64 16 23 H 0.40 11.57 8.95 -92.71 -0.83 10.74 16 24 H 0.42 9.11 8.81 -92.71 -0.82 8.30 16 25 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 26 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 27 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.13 6.13 7.15 -2.91 -0.02 6.11 16 Total: -1.00 -64.91 262.22 2.33 -62.58 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.61 Total: 27.18 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 4.32 Total: -19.98 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -3.22 Total: -125.02 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 1.84 Total: 55.23 kcal Total: -64.91 2.33 -62.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309534844.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.251 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds