Wall clock time and date at job start Mon Mar 30 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86795 * 119.99690 * 2 1 4 4 H 1.48499 * 109.46951 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47378 * 299.99933 * 3 2 1 6 6 H 1.48493 * 109.47323 * 60.00109 * 3 2 1 7 7 C 1.40160 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99715 * 179.97438 * 7 2 1 9 9 C 1.40782 * 120.00602 * 359.97438 * 7 2 1 10 10 N 1.33730 * 119.88740 * 0.02562 * 9 7 2 11 11 C 1.31882 * 121.53894 * 179.97438 * 10 9 7 12 12 N 1.38643 * 119.43012 * 179.97438 * 11 10 9 13 13 C 1.40070 * 121.14580 * 0.02562 * 11 10 9 14 14 C 1.38050 * 119.65639 * 359.97436 * 13 11 10 15 15 C 1.39865 * 118.56711 * 0.02562 * 14 13 11 16 16 C 1.47788 * 120.56057 * 179.97438 * 15 14 13 17 17 C 1.40109 * 120.93529 * 129.72152 * 16 15 14 18 18 C 1.37909 * 118.97618 * 179.79584 * 17 16 15 19 19 N 1.31955 * 120.91374 * 0.48852 * 18 17 16 20 20 C 1.31955 * 122.09132 * 359.73744 * 19 18 17 21 21 C 1.37908 * 120.91370 * 0.02562 * 20 19 18 22 22 H 0.96997 * 120.00580 * 0.02562 * 1 2 3 23 23 H 0.96998 * 120.00104 * 359.97438 * 12 11 10 24 24 H 0.97004 * 119.99725 * 179.97438 * 12 11 10 25 25 H 1.08002 * 120.17550 * 180.02562 * 13 11 10 26 26 H 1.08004 * 120.71441 * 180.29511 * 14 13 11 27 27 H 1.07993 * 120.51455 * 359.97438 * 17 16 15 28 28 H 1.07996 * 119.54405 * 180.20229 * 18 17 16 29 29 H 1.07998 * 119.54456 * 179.97438 * 20 19 18 30 30 H 1.08002 * 120.51060 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8820 2.3964 1.2124 7 6 2.0076 -1.2138 -0.0005 8 1 3.0876 -1.2138 -0.0010 9 6 1.3038 -2.4331 -0.0005 10 7 -0.0335 -2.4306 -0.0005 11 6 -0.7255 -3.5533 -0.0010 12 7 -2.1108 -3.4997 -0.0005 13 6 -0.0850 -4.7990 -0.0011 14 6 1.2942 -4.8580 -0.0011 15 6 2.0149 -3.6593 -0.0005 16 6 3.4927 -3.6711 0.0000 17 6 4.2194 -2.9086 -0.9239 18 6 5.5974 -2.9464 -0.8844 19 7 6.2300 -3.6938 0.0002 20 6 5.5850 -4.4304 0.8849 21 6 4.2065 -4.4495 0.9207 22 1 -0.4851 0.8400 -0.0004 23 1 -2.5630 -2.6415 0.0006 24 1 -2.6280 -4.3204 -0.0012 25 1 -0.6672 -5.7087 -0.0019 26 1 1.8057 -5.8093 -0.0059 27 1 3.7084 -2.2985 -1.6538 28 1 6.1667 -2.3598 -1.5901 29 1 6.1443 -5.0273 1.5900 30 1 3.6853 -5.0551 1.6473 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309555266.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:24 Heat of formation + Delta-G solvation = 65.424059 kcal Electronic energy + Delta-G solvation = -16327.723244 eV Core-core repulsion = 13701.388900 eV Total energy + Delta-G solvation = -2626.334344 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.39545 -38.10658 -34.47018 -33.39528 -31.64816 -30.69085 -30.20871 -28.00185 -25.73001 -22.82519 -22.54500 -21.45405 -20.26194 -17.77287 -16.39142 -16.21523 -15.51621 -15.20046 -14.85911 -14.73994 -13.72002 -13.42695 -13.10536 -13.00061 -12.81723 -12.56451 -12.04936 -11.37199 -11.20149 -11.12287 -10.83836 -10.59742 -10.18393 -9.91147 -9.36565 -8.83018 -8.61232 -8.40971 -8.14472 -7.68203 -6.63679 -6.51975 -4.65490 1.87106 1.90988 2.75667 3.03964 3.09022 3.11187 3.18771 3.86506 4.57766 4.67956 4.73197 5.06617 5.52669 5.67840 5.83558 5.91770 5.97996 6.05948 6.38404 6.41215 6.50764 6.65484 6.75498 6.91928 7.06959 7.13592 7.36018 7.53336 7.67736 7.77293 8.02803 8.33189 8.51623 8.65010 8.67403 8.92368 10.06010 10.21176 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.011721 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.523504 B = 2388.236702 C = 3967.288962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.070 3.930 3 Si 0.902 3.098 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.420 4.420 8 H 0.094 0.906 9 C 0.310 3.690 10 N -0.533 5.533 11 C 0.423 3.577 12 N -0.865 5.865 13 C -0.365 4.365 14 C 0.004 3.996 15 C -0.289 4.289 16 C 0.080 3.920 17 C -0.167 4.167 18 C 0.085 3.915 19 N -0.516 5.516 20 C 0.088 3.912 21 C -0.191 4.191 22 H 0.273 0.727 23 H 0.394 0.606 24 H 0.391 0.609 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.318 -3.085 -0.217 3.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.157 4.157 3 Si 0.726 3.274 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.451 4.451 8 H 0.112 0.888 9 C 0.184 3.816 10 N -0.255 5.255 11 C 0.178 3.822 12 N -0.409 5.409 13 C -0.390 4.390 14 C -0.021 4.021 15 C -0.294 4.294 16 C 0.072 3.928 17 C -0.187 4.187 18 C -0.070 4.070 19 N -0.227 5.227 20 C -0.068 4.068 21 C -0.211 4.211 22 H 0.084 0.916 23 H 0.222 0.778 24 H 0.218 0.782 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.154 0.846 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.725 -2.156 -0.223 2.770 hybrid contribution -0.705 -0.114 0.074 0.718 sum 1.020 -2.270 -0.150 2.494 Atomic orbital electron populations 1.70122 1.07331 1.27791 1.27189 1.26141 0.94872 1.01251 0.93443 0.86326 0.81249 0.81081 0.78724 1.18018 1.19639 1.19708 1.19858 0.94952 0.89224 1.41046 0.88784 1.18067 0.86580 0.90770 0.86165 1.68298 1.07304 1.24065 1.25865 1.18691 0.85177 0.90137 0.88197 1.42064 1.03501 1.09879 1.85435 1.20534 0.94553 0.95609 1.28321 1.20622 0.93049 0.95570 0.92816 1.19068 0.90109 0.94509 1.25762 1.19041 0.93360 0.90196 0.90242 1.22398 0.94572 1.01305 1.00462 1.22468 0.92046 0.96220 0.96240 1.67507 1.41547 1.08194 1.05416 1.22382 0.91708 0.96519 0.96199 1.22244 0.95015 1.03019 1.00841 0.91615 0.77759 0.78205 0.88838 0.88438 0.84636 0.83901 0.84092 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.77 11.45 55.56 0.64 -17.13 16 2 C 0.07 1.71 5.50 -17.32 -0.10 1.61 16 3 Si 0.90 18.09 29.56 -169.99 -5.03 13.07 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.42 -10.72 8.02 -37.90 -0.30 -11.03 16 8 H 0.09 2.31 5.24 -52.49 -0.27 2.03 16 9 C 0.31 8.11 6.56 -84.74 -0.56 7.55 16 10 N -0.53 -13.98 7.87 -10.15 -0.08 -14.06 16 11 C 0.42 9.79 7.74 -155.46 -1.20 8.59 16 12 N -0.86 -15.91 9.05 31.15 0.28 -15.63 16 13 C -0.36 -7.92 9.92 -38.96 -0.39 -8.31 16 14 C 0.00 0.08 9.69 -39.04 -0.38 -0.29 16 15 C -0.29 -6.83 5.58 -104.04 -0.58 -7.41 16 16 C 0.08 1.71 5.02 -104.59 -0.53 1.18 16 17 C -0.17 -3.36 7.68 -39.00 -0.30 -3.66 16 18 C 0.09 1.56 11.17 -17.62 -0.20 1.36 16 19 N -0.52 -9.66 10.34 -13.36 -0.14 -9.79 16 20 C 0.09 1.54 11.17 -17.62 -0.20 1.35 16 21 C -0.19 -3.60 9.68 -39.00 -0.38 -3.97 16 22 H 0.27 6.22 8.29 -40.82 -0.34 5.88 16 23 H 0.39 7.11 8.95 -40.82 -0.37 6.74 16 24 H 0.39 5.77 8.81 -40.82 -0.36 5.41 16 25 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 26 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 27 H 0.14 2.73 7.32 -52.49 -0.38 2.35 16 28 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 29 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 266.24 15.07 4.01 4.01 Total: -1.00 -28.96 266.24 -8.04 -37.00 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -2.63 Total: 15.56 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -5.10 Total: -13.03 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.70 Total: -56.62 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.96 -8.04 -37.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309555266.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.427 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds