Wall clock time and date at job start Mon Mar 30 2020 03:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 119.99824 * 2 1 4 4 H 1.48499 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47045 * 299.99932 * 3 2 1 6 6 H 1.48503 * 109.47344 * 59.99843 * 3 2 1 7 7 C 1.39919 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00270 * 163.59058 * 7 2 1 9 9 C 1.41061 * 119.99949 * 343.60076 * 7 2 1 10 10 C 1.40769 * 120.64353 * 334.77234 * 9 7 2 11 11 C 1.39186 * 118.17462 * 179.97438 * 10 9 7 12 12 C 1.48313 * 120.31068 * 179.97438 * 11 10 9 13 13 C 1.39802 * 120.90653 * 359.72836 * 12 11 10 14 14 C 1.37952 * 119.01732 * 179.77125 * 13 12 11 15 15 N 1.31940 * 120.88400 * 0.51107 * 14 13 12 16 16 C 1.31935 * 122.01154 * 359.73711 * 15 14 13 17 17 C 1.37957 * 120.88409 * 359.97438 * 16 15 14 18 18 C 1.39809 * 119.37459 * 0.25757 * 11 10 9 19 19 N 1.31774 * 121.27953 * 359.48569 * 18 11 10 20 20 C 1.32333 * 122.00447 * 0.50270 * 19 18 11 21 21 N 1.37935 * 119.76752 * 179.74609 * 20 19 18 22 22 H 0.97002 * 120.00084 * 355.10541 * 1 2 3 23 23 H 1.07997 * 120.91028 * 0.02562 * 10 9 7 24 24 H 1.07997 * 120.49446 * 0.02562 * 13 12 11 25 25 H 1.08004 * 119.55883 * 180.24780 * 14 13 12 26 26 H 1.08002 * 119.56555 * 179.97438 * 16 15 14 27 27 H 1.07994 * 120.49795 * 180.02562 * 17 16 15 28 28 H 1.08002 * 119.35977 * 179.72452 * 18 11 10 29 29 H 0.97007 * 119.99379 * 185.45370 * 21 20 19 30 30 H 0.96996 * 120.00905 * 5.45937 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0085 -1.2117 0.0005 8 1 3.0554 -1.2309 -0.2637 9 6 1.3462 -2.4083 0.3460 10 6 0.2061 -2.3849 1.1713 11 6 -0.4073 -3.5958 1.4792 12 6 -1.6110 -3.6263 2.3451 13 6 -2.1474 -2.4472 2.8709 14 6 -3.2710 -2.5203 3.6679 15 7 -3.8316 -3.6825 3.9432 16 6 -3.3542 -4.8184 3.4715 17 6 -2.2373 -4.8354 2.6619 18 6 0.1256 -4.7836 0.9694 19 7 1.1915 -4.7783 0.1948 20 6 1.8157 -3.6580 -0.1317 21 7 2.9311 -3.7066 -0.9418 22 1 -0.4850 0.8370 0.0717 23 1 -0.1825 -1.4529 1.5542 24 1 -1.6913 -1.4928 2.6530 25 1 -3.6950 -1.6144 4.0754 26 1 -3.8443 -5.7476 3.7224 27 1 -1.8522 -5.7688 2.2789 28 1 -0.3479 -5.7235 1.2122 29 1 3.4374 -2.8983 -1.1188 30 1 3.2091 -4.5487 -1.3345 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309557971.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:44 Heat of formation + Delta-G solvation = 57.583649 kcal Electronic energy + Delta-G solvation = -16116.522400 eV Core-core repulsion = 13489.848070 eV Total energy + Delta-G solvation = -2626.674330 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65756 -38.42306 -34.31976 -34.00026 -32.04856 -30.87512 -30.23478 -27.85771 -25.66566 -23.18769 -23.06231 -21.40708 -20.33630 -17.55788 -16.70109 -16.35459 -15.97128 -15.31427 -15.09940 -14.81862 -13.58922 -13.48507 -13.45640 -13.14138 -12.83912 -12.76201 -12.07438 -11.69275 -11.50252 -11.34387 -10.83372 -10.58748 -10.32879 -10.05555 -9.40491 -9.05091 -8.95575 -8.70095 -8.26943 -8.03302 -6.94486 -6.60525 -4.37965 1.45501 1.63949 2.65447 3.01308 3.04515 3.07548 3.10387 3.84444 4.34161 4.61779 4.76859 4.86586 5.27731 5.37995 5.56918 5.60146 5.70049 5.94726 6.11119 6.20805 6.47726 6.53552 6.56719 6.74192 6.99837 7.12055 7.20541 7.52039 7.58196 7.79650 8.13359 8.41429 8.42769 8.55538 8.65052 8.80360 9.57069 10.08974 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022397 B = 0.008140 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.852531 B = 3438.968348 C = 4610.974869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.455 4.455 8 H 0.077 0.923 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.150 4.150 12 C 0.049 3.951 13 C -0.174 4.174 14 C 0.094 3.906 15 N -0.510 5.510 16 C 0.093 3.907 17 C -0.185 4.185 18 C 0.043 3.957 19 N -0.540 5.540 20 C 0.322 3.678 21 N -0.855 5.855 22 H 0.281 0.719 23 H 0.133 0.867 24 H 0.137 0.863 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.402 0.598 30 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -1.843 2.592 3.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.095 0.905 9 C 0.016 3.984 10 C -0.124 4.124 11 C -0.155 4.155 12 C 0.040 3.960 13 C -0.194 4.194 14 C -0.062 4.062 15 N -0.221 5.221 16 C -0.064 4.064 17 C -0.205 4.205 18 C -0.113 4.113 19 N -0.257 5.257 20 C 0.083 3.917 21 N -0.401 5.401 22 H 0.092 0.908 23 H 0.151 0.849 24 H 0.155 0.845 25 H 0.165 0.835 26 H 0.165 0.835 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.233 0.767 30 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.531 -2.469 2.785 4.025 hybrid contribution 1.027 1.622 -0.526 1.991 sum -0.504 -0.847 2.259 2.464 Atomic orbital electron populations 1.69798 1.07386 1.29516 1.35779 1.25789 0.94751 1.01092 0.92481 0.86293 0.80850 0.81185 0.78628 1.18492 1.20045 1.19694 1.19153 0.97006 0.90930 1.41540 0.90508 1.17884 0.94692 0.91508 0.94322 1.21489 0.97338 0.95917 0.97607 1.19165 0.97078 0.95619 1.03656 1.19318 0.92656 0.92425 0.91587 1.22305 0.97924 0.99676 0.99456 1.22527 0.92851 0.95572 0.95221 1.67560 1.32259 0.98684 1.23567 1.22486 0.93581 0.96109 0.94178 1.22160 0.98076 0.98741 1.01536 1.21548 0.94513 0.95513 0.99679 1.66585 1.11363 1.29529 1.18240 1.18695 0.90221 0.89588 0.93212 1.41620 1.30371 1.12397 1.55713 0.90778 0.84936 0.84492 0.83473 0.83546 0.85073 0.85691 0.76737 0.78841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.38 10.95 55.55 0.61 -18.77 16 2 C 0.08 1.77 5.18 -17.33 -0.09 1.68 16 3 Si 0.91 17.55 29.59 -169.99 -5.03 12.52 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.45 -11.01 8.55 -37.88 -0.32 -11.33 16 8 H 0.08 1.73 6.62 -52.49 -0.35 1.39 16 9 C 0.02 0.58 5.59 -106.52 -0.60 -0.02 16 10 C -0.10 -2.38 8.16 -38.27 -0.31 -2.69 16 11 C -0.15 -3.38 5.88 -104.81 -0.62 -3.99 16 12 C 0.05 0.96 5.91 -104.58 -0.62 0.35 16 13 C -0.17 -3.22 9.51 -39.10 -0.37 -3.60 16 14 C 0.09 1.57 11.17 -17.61 -0.20 1.37 16 15 N -0.51 -8.76 10.35 -13.35 -0.14 -8.90 16 16 C 0.09 1.46 11.17 -17.61 -0.20 1.26 16 17 C -0.19 -3.14 9.51 -39.10 -0.37 -3.51 16 18 C 0.04 0.96 10.61 -16.99 -0.18 0.78 16 19 N -0.54 -12.59 10.35 -11.63 -0.12 -12.71 16 20 C 0.32 7.56 7.78 -155.09 -1.21 6.35 16 21 N -0.86 -16.50 8.95 31.45 0.28 -16.22 16 22 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 23 H 0.13 3.27 4.59 -52.49 -0.24 3.03 16 24 H 0.14 2.57 6.39 -52.49 -0.34 2.23 16 25 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 26 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.13 1.96 6.34 -52.49 -0.33 1.63 16 28 H 0.13 2.39 6.28 -52.49 -0.33 2.06 16 29 H 0.40 7.22 7.00 -40.82 -0.29 6.93 16 30 H 0.38 6.48 8.95 -40.82 -0.37 6.12 16 LS Contribution 261.13 15.07 3.94 3.94 Total: -1.00 -27.83 261.13 -7.76 -35.59 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -2.22 Total: 17.90 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -5.08 Total: -13.35 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.63 Total: -56.59 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.83 -7.76 -35.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309557971.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.170 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds