Wall clock time and date at job start Mon Mar 30 2020 03:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 119.99824 * 2 1 4 4 H 1.48499 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47045 * 299.99932 * 3 2 1 6 6 H 1.48503 * 109.47344 * 59.99843 * 3 2 1 7 7 C 1.39919 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00270 * 163.59058 * 7 2 1 9 9 C 1.41061 * 119.99949 * 343.60076 * 7 2 1 10 10 C 1.40769 * 120.64353 * 334.77234 * 9 7 2 11 11 C 1.39186 * 118.17462 * 179.97438 * 10 9 7 12 12 C 1.48313 * 120.31068 * 179.97438 * 11 10 9 13 13 C 1.39802 * 120.90653 * 359.72836 * 12 11 10 14 14 C 1.37952 * 119.01732 * 179.77125 * 13 12 11 15 15 N 1.31940 * 120.88400 * 0.51107 * 14 13 12 16 16 C 1.31935 * 122.01154 * 359.73711 * 15 14 13 17 17 C 1.37957 * 120.88409 * 359.97438 * 16 15 14 18 18 C 1.39809 * 119.37459 * 0.25757 * 11 10 9 19 19 N 1.31774 * 121.27953 * 359.48569 * 18 11 10 20 20 C 1.32333 * 122.00447 * 0.50270 * 19 18 11 21 21 N 1.37935 * 119.76752 * 179.74609 * 20 19 18 22 22 H 0.97002 * 120.00084 * 355.10541 * 1 2 3 23 23 H 1.07997 * 120.91028 * 0.02562 * 10 9 7 24 24 H 1.07997 * 120.49446 * 0.02562 * 13 12 11 25 25 H 1.08004 * 119.55883 * 180.24780 * 14 13 12 26 26 H 1.08002 * 119.56555 * 179.97438 * 16 15 14 27 27 H 1.07994 * 120.49795 * 180.02562 * 17 16 15 28 28 H 1.08002 * 119.35977 * 179.72452 * 18 11 10 29 29 H 0.97007 * 119.99379 * 185.45370 * 21 20 19 30 30 H 0.96996 * 120.00905 * 5.45937 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0085 -1.2117 0.0005 8 1 3.0554 -1.2309 -0.2637 9 6 1.3462 -2.4083 0.3460 10 6 0.2061 -2.3849 1.1713 11 6 -0.4073 -3.5958 1.4792 12 6 -1.6110 -3.6263 2.3451 13 6 -2.1474 -2.4472 2.8709 14 6 -3.2710 -2.5203 3.6679 15 7 -3.8316 -3.6825 3.9432 16 6 -3.3542 -4.8184 3.4715 17 6 -2.2373 -4.8354 2.6619 18 6 0.1256 -4.7836 0.9694 19 7 1.1915 -4.7783 0.1948 20 6 1.8157 -3.6580 -0.1317 21 7 2.9311 -3.7066 -0.9418 22 1 -0.4850 0.8370 0.0717 23 1 -0.1825 -1.4529 1.5542 24 1 -1.6913 -1.4928 2.6530 25 1 -3.6950 -1.6144 4.0754 26 1 -3.8443 -5.7476 3.7224 27 1 -1.8522 -5.7688 2.2789 28 1 -0.3479 -5.7235 1.2122 29 1 3.4374 -2.8983 -1.1188 30 1 3.2091 -4.5487 -1.3345 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309557971.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:43 Heat of formation + Delta-G solvation = 40.664825 kcal Electronic energy + Delta-G solvation = -16117.256055 eV Core-core repulsion = 13489.848070 eV Total energy + Delta-G solvation = -2627.407985 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.10430 -40.06018 -35.99191 -35.68698 -33.60211 -32.32009 -31.86039 -29.49093 -27.41319 -24.67218 -24.57134 -23.05162 -21.94939 -19.24722 -18.34694 -17.99240 -17.48061 -16.81104 -16.56140 -16.31396 -15.20949 -15.04501 -14.93303 -14.53316 -14.47056 -14.31919 -13.77848 -13.34433 -13.19118 -12.85745 -12.37774 -12.12402 -11.90695 -11.74275 -11.14583 -10.53363 -10.42848 -10.02288 -10.01101 -9.80437 -8.68527 -8.29276 -6.19288 -0.05609 0.31867 0.93902 1.38744 1.42114 1.51888 1.55291 2.22182 2.75584 3.07225 3.16263 3.65898 3.77787 3.89606 3.99932 4.20152 4.30286 4.41743 4.60364 4.83961 4.86884 4.96000 5.08401 5.19274 5.26574 5.49527 5.76712 5.85295 5.90033 6.03766 6.38239 6.70413 6.84401 6.96192 7.09965 7.10493 7.85510 8.36696 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022397 B = 0.008140 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.852531 B = 3438.968348 C = 4610.974869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.036 3.964 3 Si 0.977 3.023 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.479 4.479 8 H 0.085 0.915 9 C -0.008 4.008 10 C -0.121 4.121 11 C -0.155 4.155 12 C 0.020 3.980 13 C -0.187 4.187 14 C 0.098 3.902 15 N -0.518 5.518 16 C 0.099 3.901 17 C -0.181 4.181 18 C 0.036 3.964 19 N -0.551 5.551 20 C 0.309 3.691 21 N -0.841 5.841 22 H 0.286 0.714 23 H 0.121 0.879 24 H 0.123 0.877 25 H 0.176 0.824 26 H 0.188 0.812 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.408 0.592 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 -2.401 3.131 4.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.510 4.510 8 H 0.103 0.897 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.160 4.160 12 C 0.012 3.988 13 C -0.207 4.207 14 C -0.058 4.058 15 N -0.228 5.228 16 C -0.057 4.057 17 C -0.201 4.201 18 C -0.119 4.119 19 N -0.269 5.269 20 C 0.068 3.932 21 N -0.388 5.388 22 H 0.097 0.903 23 H 0.138 0.862 24 H 0.141 0.859 25 H 0.193 0.807 26 H 0.205 0.795 27 H 0.170 0.830 28 H 0.173 0.827 29 H 0.240 0.760 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.924 -3.045 3.311 4.893 hybrid contribution 1.062 1.693 -0.653 2.103 sum -0.862 -1.352 2.658 3.104 Atomic orbital electron populations 1.69865 1.08794 1.30603 1.36486 1.26602 0.95412 1.04101 0.91686 0.85221 0.79672 0.76767 0.78472 1.17789 1.19791 1.19454 1.19430 0.97530 0.91509 1.42537 0.89668 1.18251 0.95506 0.92597 0.95152 1.21532 0.98176 0.96420 0.98630 1.19403 0.97867 0.95060 1.03693 1.19387 0.92679 0.94161 0.92599 1.22310 0.98920 0.99012 1.00480 1.22896 0.91893 0.96719 0.94261 1.67683 1.32325 0.99140 1.23645 1.23123 0.92802 0.97156 0.92639 1.22395 0.98065 0.98370 1.01234 1.22073 0.94204 0.96629 0.98965 1.66682 1.11992 1.29324 1.18890 1.18932 0.91155 0.89361 0.93703 1.41514 1.29168 1.13415 1.54743 0.90303 0.86164 0.85858 0.80741 0.79523 0.83008 0.82681 0.76047 0.77353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.42 10.95 21.83 0.24 -41.19 16 2 C 0.04 1.70 5.18 85.24 0.44 2.15 16 3 Si 0.98 36.15 29.59 68.60 2.03 38.18 16 4 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 7 C -0.48 -23.61 8.55 23.37 0.20 -23.41 16 8 H 0.09 3.88 6.62 -2.91 -0.02 3.86 16 9 C -0.01 -0.40 5.59 -21.09 -0.12 -0.52 16 10 C -0.12 -6.14 8.16 23.12 0.19 -5.95 16 11 C -0.16 -7.07 5.88 -19.99 -0.12 -7.19 16 12 C 0.02 0.80 5.91 -19.84 -0.12 0.68 16 13 C -0.19 -6.99 9.51 22.58 0.21 -6.77 16 14 C 0.10 3.12 11.17 84.61 0.95 4.07 16 15 N -0.52 -16.42 10.35 -196.14 -2.03 -18.45 16 16 C 0.10 2.79 11.17 84.61 0.95 3.74 16 17 C -0.18 -5.73 9.51 22.58 0.21 -5.51 16 18 C 0.04 1.59 10.61 85.08 0.90 2.49 16 19 N -0.55 -25.53 10.35 -190.69 -1.97 -27.50 16 20 C 0.31 14.60 7.78 134.11 1.04 15.65 16 21 N -0.84 -32.21 8.95 -54.42 -0.49 -32.69 16 22 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 23 H 0.12 6.26 4.59 -2.91 -0.01 6.25 16 24 H 0.12 4.86 6.39 -2.91 -0.02 4.84 16 25 H 0.18 4.44 8.06 -2.91 -0.02 4.42 16 26 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 27 H 0.15 4.07 6.34 -2.91 -0.02 4.05 16 28 H 0.16 5.62 6.28 -2.91 -0.02 5.60 16 29 H 0.41 14.54 7.00 -92.70 -0.65 13.89 16 30 H 0.40 13.06 8.95 -92.71 -0.83 12.24 16 Total: -1.00 -60.02 261.13 2.26 -57.76 By element: Atomic # 1 Polarization: 44.73 SS G_CDS: -0.26 Total: 44.47 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 4.74 Total: -20.58 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -4.25 Total: -119.83 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -60.02 2.26 -57.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309557971.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.426 kcal (2) G-P(sol) polarization free energy of solvation -60.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds