Wall clock time and date at job start Mon Mar 30 2020 03:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40268 * 119.83283 * 158.67600 * 3 2 1 5 5 C 1.36214 * 120.37077 * 180.02562 * 4 3 2 6 6 C 1.39891 * 119.96885 * 0.04087 * 5 4 3 7 7 C 1.46310 * 133.82097 * 179.97438 * 6 5 4 8 8 C 1.34413 * 107.03340 * 179.74492 * 7 6 5 9 9 C 1.50702 * 125.01692 * 180.21433 * 8 7 6 10 10 H 1.09008 * 109.46996 * 155.18385 * 9 8 7 11 11 N 1.46897 * 109.46756 * 35.18688 * 9 8 7 12 12 C 1.50694 * 109.47040 * 275.18415 * 9 8 7 13 13 H 1.08000 * 120.00334 * 0.02562 * 12 9 8 14 14 C 1.37883 * 119.99813 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00018 * 179.97438 * 14 12 9 16 16 Si 1.86795 * 119.99998 * 0.02562 * 14 12 9 17 17 H 1.48495 * 109.47316 * 89.99441 * 16 14 12 18 18 H 1.48497 * 109.47019 * 209.99818 * 16 14 12 19 19 H 1.48509 * 109.46875 * 329.99294 * 16 14 12 20 20 N 1.36639 * 109.97088 * 0.37930 * 8 7 6 21 21 H 0.97001 * 125.07680 * 179.88233 * 20 8 7 22 22 C 1.37815 * 109.85141 * 359.60649 * 20 8 7 23 23 C 1.38716 * 133.36408 * 180.22635 * 22 20 8 24 24 H 1.08004 * 119.81808 * 0.02562 * 4 3 2 25 25 H 1.08007 * 120.01339 * 180.02562 * 5 4 3 26 26 H 1.07997 * 126.48147 * 359.97438 * 7 6 5 27 27 H 1.00900 * 110.99774 * 299.99679 * 11 9 8 28 28 H 1.00896 * 111.00251 * 63.95617 * 11 9 8 29 29 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 30 30 H 1.08007 * 120.17124 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2653 1.1344 -0.4425 5 6 4.6274 1.1468 -0.4476 6 6 5.3380 0.0238 -0.0106 7 6 6.7619 -0.2899 0.1106 8 6 6.8497 -1.5376 0.6028 9 6 8.1377 -2.2644 0.8922 10 1 7.9631 -3.0235 1.6548 11 7 9.1421 -1.3073 1.3750 12 6 8.6366 -2.9235 -0.3678 13 1 8.0772 -2.8256 -1.2864 14 6 9.8079 -3.6508 -0.3480 15 7 10.2431 -4.2265 -1.4475 16 14 10.7758 -3.8196 1.2406 17 1 10.3091 -5.0202 1.9794 18 1 12.2204 -3.9616 0.9274 19 1 10.5673 -2.6110 2.0780 20 7 5.5987 -2.0511 0.7984 21 1 5.4076 -2.9369 1.1447 22 6 4.6488 -1.1206 0.4362 23 6 3.2617 -1.1248 0.4389 24 1 2.7192 2.0026 -0.7810 25 1 5.1584 2.0231 -0.7891 26 1 7.5864 0.3597 -0.1434 27 1 9.3216 -0.5930 0.6854 28 1 8.8598 -0.8992 2.2535 29 1 11.0669 -4.7384 -1.4335 30 1 2.7222 -1.9963 0.7795 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309560113.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:34 Heat of formation + Delta-G solvation = 89.529945 kcal Electronic energy + Delta-G solvation = -15753.028627 eV Core-core repulsion = 13127.739593 eV Total energy + Delta-G solvation = -2625.289034 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.10380 -37.80298 -36.03665 -34.59907 -32.06730 -31.68888 -29.47936 -28.54072 -26.60641 -23.63618 -22.40593 -21.47807 -19.66193 -18.66357 -17.09030 -16.63947 -16.00681 -14.87843 -14.66873 -14.41336 -14.26347 -13.81617 -13.74329 -13.50514 -13.36161 -12.70821 -12.64233 -12.37464 -12.01017 -11.45831 -11.41109 -10.95047 -10.87951 -10.46944 -10.17070 -9.56929 -9.40771 -8.70016 -8.02256 -7.56651 -7.35578 -6.15195 -4.28792 0.81321 1.54485 2.64585 2.86494 3.27797 3.35092 3.39440 3.51945 3.80269 4.03184 4.05322 4.55957 4.78510 4.99727 5.13727 5.21100 5.39297 5.47212 5.71621 5.74188 5.83558 6.05878 6.17577 6.33410 6.45791 6.53772 6.83308 7.05703 7.28230 7.40548 7.49606 7.79339 7.96733 8.14125 8.49547 8.84075 9.46062 10.93805 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.049123 B = 0.005123 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.860036 B = 5464.405016 C = 5588.664012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.269 3.731 3 C -0.037 4.037 4 C -0.105 4.105 5 C -0.079 4.079 6 C -0.066 4.066 7 C -0.234 4.234 8 C 0.129 3.871 9 C 0.239 3.761 10 H 0.047 0.953 11 N -0.824 5.824 12 C -0.528 4.528 13 H 0.073 0.927 14 C 0.089 3.911 15 N -0.892 5.892 16 Si 0.866 3.134 17 H -0.297 1.297 18 H -0.301 1.301 19 H -0.192 1.192 20 N -0.583 5.583 21 H 0.416 0.584 22 C 0.077 3.923 23 C -0.065 4.065 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.145 0.855 27 H 0.337 0.663 28 H 0.312 0.688 29 H 0.266 0.734 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 8.329 5.605 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.046 4.046 3 C -0.042 4.042 4 C -0.127 4.127 5 C -0.097 4.097 6 C -0.073 4.073 7 C -0.257 4.257 8 C 0.016 3.984 9 C 0.128 3.872 10 H 0.065 0.935 11 N -0.353 5.353 12 C -0.566 4.566 13 H 0.091 0.909 14 C -0.117 4.117 15 N -0.528 5.528 16 Si 0.693 3.307 17 H -0.224 1.224 18 H -0.228 1.228 19 H -0.114 1.114 20 N -0.185 5.185 21 H 0.253 0.747 22 C -0.030 4.030 23 C -0.088 4.088 24 H 0.144 0.856 25 H 0.146 0.854 26 H 0.162 0.838 27 H 0.151 0.849 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.072 7.496 5.596 13.031 hybrid contribution 0.115 -0.087 0.489 0.510 sum -8.956 7.409 6.085 13.120 Atomic orbital electron populations 1.81215 1.12179 1.08174 1.09994 1.25737 0.92625 0.93194 0.92999 1.15434 0.83653 0.96362 1.08764 1.20421 0.93936 0.96795 1.01558 1.20113 0.92845 0.97221 0.99540 1.19479 0.93879 0.93345 1.00551 1.21311 0.93652 0.97501 1.13279 1.22483 0.87018 0.93680 0.95201 1.18391 0.81065 0.90293 0.97466 0.93528 1.60134 1.46089 1.22205 1.06893 1.20629 1.09449 1.32460 0.94072 0.90907 1.24972 0.96524 0.93137 0.97044 1.69939 1.22213 1.32522 1.28129 0.87201 0.77766 0.80358 0.85391 1.22409 1.22843 1.11358 1.41936 1.04466 1.15323 1.56796 0.74663 1.17970 0.90062 0.91097 1.03911 1.19869 0.90397 0.97607 1.00952 0.85628 0.85352 0.83765 0.84894 0.87660 0.92488 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.50 18.54 41.84 0.78 -5.73 16 2 C 0.27 3.50 15.30 -22.47 -0.34 3.15 16 3 C -0.04 -0.46 5.74 -106.81 -0.61 -1.07 16 4 C -0.11 -1.19 9.67 -39.55 -0.38 -1.58 16 5 C -0.08 -0.97 10.03 -39.69 -0.40 -1.37 16 6 C -0.07 -0.99 6.37 -105.04 -0.67 -1.66 16 7 C -0.23 -3.84 10.33 -37.69 -0.39 -4.23 16 8 C 0.13 2.25 6.07 -81.80 -0.50 1.75 16 9 C 0.24 4.74 2.63 -70.02 -0.18 4.55 16 10 H 0.05 0.93 7.57 -51.92 -0.39 0.53 16 11 N -0.82 -14.70 5.67 -6.65 -0.04 -14.74 16 12 C -0.53 -13.40 9.29 -34.44 -0.32 -13.72 16 13 H 0.07 2.09 7.98 -52.49 -0.42 1.67 16 14 C 0.09 2.38 5.47 -17.82 -0.10 2.28 16 15 N -0.89 -26.06 13.96 55.43 0.77 -25.28 16 16 Si 0.87 19.87 26.94 -169.99 -4.58 15.29 16 17 H -0.30 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.19 -3.99 5.17 56.52 0.29 -3.70 16 20 N -0.58 -8.88 6.07 -6.98 -0.04 -8.92 16 21 H 0.42 5.41 8.96 -40.82 -0.37 5.04 16 22 C 0.08 1.12 7.26 -84.00 -0.61 0.51 16 23 C -0.06 -0.81 9.77 -39.01 -0.38 -1.19 16 24 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 25 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 26 H 0.14 2.21 7.39 -52.49 -0.39 1.82 16 27 H 0.34 5.81 7.94 -39.29 -0.31 5.50 16 28 H 0.31 4.71 9.06 -39.29 -0.36 4.35 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 269.87 15.07 4.07 4.07 Total: -1.00 -29.85 269.87 -6.67 -36.53 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -2.75 Total: 11.34 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -4.88 Total: -12.56 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 1.47 Total: -54.67 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.58 Total: 15.29 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.85 -6.67 -36.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309560113.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.059 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds