Wall clock time and date at job start Mon Mar 30 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40268 * 119.83283 * 158.67600 * 3 2 1 5 5 C 1.36214 * 120.37077 * 180.02562 * 4 3 2 6 6 C 1.39891 * 119.96885 * 0.04087 * 5 4 3 7 7 C 1.46310 * 133.82097 * 179.97438 * 6 5 4 8 8 C 1.34413 * 107.03340 * 179.74492 * 7 6 5 9 9 C 1.50702 * 125.01692 * 180.21433 * 8 7 6 10 10 H 1.09008 * 109.46996 * 155.18385 * 9 8 7 11 11 N 1.46897 * 109.46756 * 35.18688 * 9 8 7 12 12 C 1.50694 * 109.47040 * 275.18415 * 9 8 7 13 13 H 1.08000 * 120.00334 * 0.02562 * 12 9 8 14 14 C 1.37883 * 119.99813 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00018 * 179.97438 * 14 12 9 16 16 Si 1.86795 * 119.99998 * 0.02562 * 14 12 9 17 17 H 1.48495 * 109.47316 * 89.99441 * 16 14 12 18 18 H 1.48497 * 109.47019 * 209.99818 * 16 14 12 19 19 H 1.48509 * 109.46875 * 329.99294 * 16 14 12 20 20 N 1.36639 * 109.97088 * 0.37930 * 8 7 6 21 21 H 0.97001 * 125.07680 * 179.88233 * 20 8 7 22 22 C 1.37815 * 109.85141 * 359.60649 * 20 8 7 23 23 C 1.38716 * 133.36408 * 180.22635 * 22 20 8 24 24 H 1.08004 * 119.81808 * 0.02562 * 4 3 2 25 25 H 1.08007 * 120.01339 * 180.02562 * 5 4 3 26 26 H 1.07997 * 126.48147 * 359.97438 * 7 6 5 27 27 H 1.00900 * 110.99774 * 299.99679 * 11 9 8 28 28 H 1.00896 * 111.00251 * 63.95617 * 11 9 8 29 29 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 30 30 H 1.08007 * 120.17124 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2653 1.1344 -0.4425 5 6 4.6274 1.1468 -0.4476 6 6 5.3380 0.0238 -0.0106 7 6 6.7619 -0.2899 0.1106 8 6 6.8497 -1.5376 0.6028 9 6 8.1377 -2.2644 0.8922 10 1 7.9631 -3.0235 1.6548 11 7 9.1421 -1.3073 1.3750 12 6 8.6366 -2.9235 -0.3678 13 1 8.0772 -2.8256 -1.2864 14 6 9.8079 -3.6508 -0.3480 15 7 10.2431 -4.2265 -1.4475 16 14 10.7758 -3.8196 1.2406 17 1 10.3091 -5.0202 1.9794 18 1 12.2204 -3.9616 0.9274 19 1 10.5673 -2.6110 2.0780 20 7 5.5987 -2.0511 0.7984 21 1 5.4076 -2.9369 1.1447 22 6 4.6488 -1.1206 0.4362 23 6 3.2617 -1.1248 0.4389 24 1 2.7192 2.0026 -0.7810 25 1 5.1584 2.0231 -0.7891 26 1 7.5864 0.3597 -0.1434 27 1 9.3216 -0.5930 0.6854 28 1 8.8598 -0.8992 2.2535 29 1 11.0669 -4.7384 -1.4335 30 1 2.7222 -1.9963 0.7795 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309560113.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:33 Heat of formation + Delta-G solvation = 69.356174 kcal Electronic energy + Delta-G solvation = -15753.903427 eV Core-core repulsion = 13127.739593 eV Total energy + Delta-G solvation = -2626.163835 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.23769 -38.90549 -37.22031 -36.07192 -33.89453 -32.86981 -30.56422 -29.72086 -28.35604 -25.06954 -23.44672 -22.78766 -20.96548 -19.73307 -18.94473 -17.96358 -17.09242 -16.53312 -15.88389 -15.71751 -15.51329 -15.13420 -14.83454 -14.68111 -14.62408 -14.29474 -13.80198 -13.70891 -13.35775 -12.90422 -12.65936 -12.56918 -12.12707 -11.91904 -11.81344 -11.40650 -10.73446 -10.62922 -9.13973 -9.00353 -8.57466 -8.21632 -6.37579 -0.24434 0.55204 1.55822 1.59375 1.64766 1.67889 1.98667 2.15378 2.23768 2.63175 2.97369 3.03022 3.17746 3.79144 3.92669 4.18071 4.25109 4.34006 4.42075 4.62557 4.71247 4.88000 5.03778 5.13477 5.34910 5.46240 5.52432 5.78322 5.91974 6.12292 6.18870 6.45905 6.48203 6.68021 6.79337 7.04678 7.41008 8.91061 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.049123 B = 0.005123 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.860036 B = 5464.405016 C = 5588.664012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.289 3.711 3 C -0.031 4.031 4 C -0.096 4.096 5 C -0.076 4.076 6 C -0.089 4.089 7 C -0.234 4.234 8 C 0.101 3.899 9 C 0.249 3.751 10 H 0.052 0.948 11 N -0.826 5.826 12 C -0.519 4.519 13 H 0.025 0.975 14 C 0.029 3.971 15 N -0.950 5.950 16 Si 0.930 3.070 17 H -0.301 1.301 18 H -0.318 1.318 19 H -0.151 1.151 20 N -0.583 5.583 21 H 0.423 0.577 22 C 0.067 3.933 23 C -0.064 4.064 24 H 0.155 0.845 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.342 0.658 28 H 0.335 0.665 29 H 0.263 0.737 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.075 10.149 7.204 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.025 4.025 3 C -0.036 4.036 4 C -0.118 4.118 5 C -0.094 4.094 6 C -0.095 4.095 7 C -0.258 4.258 8 C -0.012 4.012 9 C 0.137 3.863 10 H 0.070 0.930 11 N -0.356 5.356 12 C -0.557 4.557 13 H 0.043 0.957 14 C -0.170 4.170 15 N -0.589 5.589 16 Si 0.755 3.245 17 H -0.229 1.229 18 H -0.247 1.247 19 H -0.071 1.071 20 N -0.186 5.186 21 H 0.261 0.739 22 C -0.040 4.040 23 C -0.087 4.087 24 H 0.172 0.828 25 H 0.170 0.830 26 H 0.167 0.833 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.071 0.929 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.224 9.336 7.218 15.614 hybrid contribution 0.287 -0.562 -0.099 0.639 sum -9.937 8.774 7.119 15.047 Atomic orbital electron populations 1.81253 1.13079 1.09171 1.10984 1.25695 0.92448 0.92254 0.92082 1.15523 0.83167 0.96625 1.08282 1.20733 0.93671 0.97241 1.00105 1.20387 0.93232 0.97132 0.98682 1.19709 0.93304 0.94660 1.01797 1.21505 0.94868 0.97250 1.12205 1.22032 0.87018 0.94281 0.97847 1.17962 0.82566 0.90919 0.94823 0.93028 1.59790 1.45345 1.22398 1.08115 1.20852 1.08266 1.31889 0.94697 0.95703 1.25903 0.97932 0.93084 1.00112 1.70102 1.23111 1.34873 1.30798 0.86319 0.74851 0.81492 0.81860 1.22870 1.24672 1.07123 1.41852 1.03987 1.15830 1.56910 0.73869 1.18182 0.90694 0.90918 1.04184 1.20041 0.89666 0.98476 1.00529 0.82774 0.82994 0.83266 0.84383 0.85126 0.92862 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.87 18.54 19.00 0.35 -12.51 16 2 C 0.29 6.74 15.30 88.33 1.35 8.09 16 3 C -0.03 -0.67 5.74 -21.28 -0.12 -0.79 16 4 C -0.10 -1.82 9.67 22.29 0.22 -1.60 16 5 C -0.08 -1.63 10.03 22.20 0.22 -1.40 16 6 C -0.09 -2.48 6.37 -20.14 -0.13 -2.61 16 7 C -0.23 -7.40 10.33 23.50 0.24 -7.16 16 8 C 0.10 3.44 6.07 40.94 0.25 3.69 16 9 C 0.25 9.65 2.63 43.42 0.11 9.77 16 10 H 0.05 1.97 7.57 -2.38 -0.02 1.95 16 11 N -0.83 -27.55 5.67 -174.96 -0.99 -28.54 16 12 C -0.52 -26.91 9.29 25.60 0.24 -26.67 16 13 H 0.02 1.49 7.98 -2.91 -0.02 1.47 16 14 C 0.03 1.58 5.47 84.66 0.46 2.04 16 15 N -0.95 -57.72 13.96 21.45 0.30 -57.42 16 16 Si 0.93 41.14 26.94 68.60 1.85 42.99 16 17 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.32 -14.92 7.11 99.48 0.71 -14.21 16 19 H -0.15 -5.68 5.17 99.48 0.51 -5.16 16 20 N -0.58 -17.19 6.07 -175.98 -1.07 -18.26 16 21 H 0.42 10.68 8.96 -92.71 -0.83 9.85 16 22 C 0.07 1.85 7.26 38.96 0.28 2.13 16 23 C -0.06 -1.44 9.77 22.64 0.22 -1.22 16 24 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 25 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 26 H 0.15 4.39 7.39 -2.91 -0.02 4.37 16 27 H 0.34 11.16 7.94 -89.69 -0.71 10.45 16 28 H 0.34 9.01 9.06 -89.70 -0.81 8.19 16 29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -66.21 269.87 2.46 -63.75 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -1.33 Total: 25.73 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 3.35 Total: -15.74 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -1.41 Total: -116.74 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.85 Total: 42.99 kcal Total: -66.21 2.46 -63.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309560113.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.111 kcal (2) G-P(sol) polarization free energy of solvation -66.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds