Wall clock time and date at job start Mon Mar 30 2020 03:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.47436 * 126.75212 * 73.78525 * 3 2 1 5 5 C 1.39293 * 133.98042 * 0.02562 * 4 3 2 6 6 C 1.37746 * 119.66869 * 180.26917 * 5 4 3 7 7 C 1.38763 * 120.30987 * 0.02562 * 6 5 4 8 8 C 1.37756 * 120.63770 * 0.02562 * 7 6 5 9 9 C 1.39129 * 119.92792 * 359.96909 * 8 7 6 10 10 N 1.37936 * 133.18227 * 180.02562 * 9 8 7 11 11 H 0.97005 * 124.80849 * 359.97438 * 10 9 8 12 12 C 1.35739 * 110.38445 * 179.97438 * 10 9 8 13 13 C 1.50698 * 125.13114 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46875 * 220.02068 * 13 12 10 15 15 N 1.46895 * 109.47244 * 340.02018 * 13 12 10 16 16 C 1.50697 * 109.46993 * 100.02390 * 13 12 10 17 17 H 1.07991 * 120.00449 * 359.72131 * 16 13 12 18 18 C 1.37885 * 119.99686 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00035 * 179.72339 * 18 16 13 20 20 Si 1.86803 * 119.99853 * 359.72191 * 18 16 13 21 21 H 1.48500 * 109.46986 * 90.00256 * 20 18 16 22 22 H 1.48496 * 109.47029 * 210.00273 * 20 18 16 23 23 H 1.48499 * 109.47352 * 330.00102 * 20 18 16 24 24 H 1.07994 * 120.16634 * 0.29205 * 5 4 3 25 25 H 1.08006 * 119.84269 * 179.97438 * 6 5 4 26 26 H 1.07996 * 119.68106 * 179.97438 * 7 6 5 27 27 H 1.07999 * 120.03869 * 180.02562 * 8 7 6 28 28 H 1.00904 * 110.99999 * 59.99756 * 15 13 12 29 29 H 1.00895 * 111.00220 * 183.95559 * 15 13 12 30 30 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4503 -0.3288 -1.1343 5 6 3.2262 -0.7124 -2.4545 6 6 4.2977 -0.9592 -3.2841 7 6 5.5952 -0.8278 -2.8101 8 6 5.8315 -0.4503 -1.5065 9 6 4.7627 -0.1963 -0.6528 10 7 4.6814 0.1887 0.6692 11 1 5.4439 0.3523 1.2462 12 6 3.3834 0.3064 1.0485 13 6 2.9146 0.7094 2.4228 14 1 2.0502 0.1074 2.7029 15 7 3.9968 0.4931 3.3923 16 6 2.5307 2.1666 2.4153 17 1 2.6217 2.7444 1.5074 18 6 2.0681 2.7636 3.5689 19 7 1.7382 4.0367 3.5637 20 14 1.9100 1.7641 5.1391 21 1 3.1802 1.8408 5.9046 22 1 0.8016 2.3092 5.9633 23 1 1.6226 0.3478 4.7975 24 1 2.2173 -0.8154 -2.8259 25 1 4.1271 -1.2571 -4.3082 26 1 6.4278 -1.0242 -3.4692 27 1 6.8453 -0.3506 -1.1478 28 1 4.8102 1.0407 3.1544 29 1 3.6869 0.6949 4.3311 30 1 1.4124 4.4566 4.3752 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309575508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:40 Heat of formation + Delta-G solvation = 63.865088 kcal Electronic energy + Delta-G solvation = -16187.126889 eV Core-core repulsion = 13560.724943 eV Total energy + Delta-G solvation = -2626.401946 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.41167 -38.40489 -37.32325 -36.41288 -33.94818 -33.04255 -30.37400 -30.19019 -28.11109 -25.07955 -23.81562 -22.96904 -21.61316 -19.37090 -19.04794 -17.56177 -17.33017 -17.21230 -16.37090 -15.74497 -15.64706 -15.08207 -14.86076 -14.69255 -14.26279 -14.18541 -13.88775 -13.78844 -13.54377 -12.98372 -12.89411 -12.48279 -12.36757 -12.18559 -11.80682 -11.73666 -10.98767 -10.58285 -9.75057 -9.08183 -8.65355 -8.47404 -6.60034 0.09418 0.66822 1.08517 1.18262 1.30722 1.37116 1.75338 2.06017 2.14542 2.56582 2.83879 3.06357 3.31368 3.46075 3.84214 4.04152 4.30757 4.41809 4.48300 4.59831 4.63686 4.76265 5.01776 5.15977 5.20523 5.53899 5.64599 5.68283 5.75735 5.89614 6.11897 6.22155 6.40184 6.55175 6.60315 6.69653 7.06727 8.67927 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.032164 B = 0.007305 C = 0.006542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.334771 B = 3832.123566 C = 4278.927406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.314 3.686 3 C -0.187 4.187 4 C -0.085 4.085 5 C -0.103 4.103 6 C -0.129 4.129 7 C -0.101 4.101 8 C -0.115 4.115 9 C 0.079 3.921 10 N -0.553 5.553 11 H 0.434 0.566 12 C 0.226 3.774 13 C 0.230 3.770 14 H 0.056 0.944 15 N -0.834 5.834 16 C -0.554 4.554 17 H 0.037 0.963 18 C 0.025 3.975 19 N -0.928 5.928 20 Si 0.929 3.071 21 H -0.238 1.238 22 H -0.293 1.293 23 H -0.249 1.249 24 H 0.117 0.883 25 H 0.152 0.848 26 H 0.164 0.836 27 H 0.154 0.846 28 H 0.344 0.656 29 H 0.329 0.671 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.856 -10.502 -7.853 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C 0.002 3.998 3 C -0.198 4.198 4 C -0.090 4.090 5 C -0.122 4.122 6 C -0.147 4.147 7 C -0.120 4.120 8 C -0.136 4.136 9 C -0.026 4.026 10 N -0.155 5.155 11 H 0.275 0.725 12 C 0.105 3.895 13 C 0.119 3.881 14 H 0.073 0.927 15 N -0.368 5.368 16 C -0.594 4.594 17 H 0.055 0.945 18 C -0.176 4.176 19 N -0.566 5.566 20 Si 0.753 3.247 21 H -0.162 1.162 22 H -0.221 1.221 23 H -0.173 1.173 24 H 0.135 0.865 25 H 0.170 0.830 26 H 0.182 0.818 27 H 0.171 0.829 28 H 0.156 0.844 29 H 0.145 0.855 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.160 -11.104 -7.922 17.624 hybrid contribution -0.290 1.486 1.414 2.072 sum 10.870 -9.618 -6.508 15.907 Atomic orbital electron populations 1.81086 1.12757 1.13815 1.09364 1.24880 0.91918 0.91031 0.92007 1.15659 0.84045 1.23876 0.96238 1.18889 0.91266 1.05066 0.93828 1.20627 1.00296 1.00133 0.91096 1.21259 0.91905 1.01132 1.00434 1.21244 0.97695 0.98517 0.94500 1.20462 0.96915 1.03058 0.93123 1.18515 0.95480 1.03978 0.84606 1.41327 1.06506 1.57544 1.10107 0.72482 1.20343 0.83550 0.91023 0.94627 1.18110 0.91496 0.93817 0.84677 0.92655 1.59590 1.08821 1.63170 1.05240 1.21556 1.46110 0.94294 0.97447 0.94476 1.25833 0.93397 0.95750 1.02578 1.70017 1.43782 1.12689 1.30139 0.86089 0.79470 0.79783 0.79313 1.16231 1.22056 1.17310 0.86453 0.83021 0.81835 0.82879 0.84356 0.85459 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -23.41 18.54 19.00 0.35 -23.06 16 2 C 0.31 14.14 15.48 88.33 1.37 15.50 16 3 C -0.19 -7.55 6.12 -20.06 -0.12 -7.68 16 4 C -0.09 -2.86 6.34 -20.07 -0.13 -2.99 16 5 C -0.10 -2.87 10.09 22.41 0.23 -2.64 16 6 C -0.13 -2.59 10.03 22.28 0.22 -2.37 16 7 C -0.10 -1.74 10.01 22.28 0.22 -1.52 16 8 C -0.12 -2.35 10.07 22.37 0.23 -2.12 16 9 C 0.08 2.26 7.26 38.93 0.28 2.54 16 10 N -0.55 -16.72 5.83 -175.24 -1.02 -17.74 16 11 H 0.43 10.40 7.94 -92.70 -0.74 9.67 16 12 C 0.23 8.81 6.05 41.50 0.25 9.06 16 13 C 0.23 10.02 2.37 43.42 0.10 10.13 16 14 H 0.06 2.61 7.13 -2.39 -0.02 2.60 16 15 N -0.83 -30.09 8.93 -174.97 -1.56 -31.65 16 16 C -0.55 -29.66 9.29 25.60 0.24 -29.43 16 17 H 0.04 2.27 7.98 -2.92 -0.02 2.25 16 18 C 0.03 1.39 5.47 84.66 0.46 1.85 16 19 N -0.93 -55.34 13.96 21.45 0.30 -55.04 16 20 Si 0.93 40.38 24.63 68.60 1.69 42.06 16 21 H -0.24 -9.04 7.00 99.48 0.70 -8.34 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 24 H 0.12 3.20 8.06 -2.91 -0.02 3.17 16 25 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 26 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 27 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 28 H 0.34 10.91 8.09 -89.69 -0.73 10.18 16 29 H 0.33 12.15 4.32 -89.70 -0.39 11.77 16 30 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -68.35 267.11 2.41 -65.94 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -0.70 Total: 29.14 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 3.35 Total: -9.65 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -1.93 Total: -127.49 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.69 Total: 42.06 kcal Total: -68.35 2.41 -65.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309575508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.802 kcal (2) G-P(sol) polarization free energy of solvation -68.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds