Wall clock time and date at job start Mon Mar 30 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99668 * 2 1 4 4 C 1.50704 * 109.47108 * 66.05073 * 3 2 1 5 5 H 1.07995 * 120.00005 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99800 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00411 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99987 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46689 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47537 * 119.99387 * 8 6 4 11 11 H 1.48499 * 109.47084 * 239.99698 * 8 6 4 12 12 C 1.46894 * 110.99962 * 236.04867 * 2 1 3 13 13 C 1.50701 * 109.47254 * 293.95515 * 12 2 1 14 14 N 1.30923 * 126.44719 * 90.01205 * 13 12 2 15 15 C 1.35248 * 105.58016 * 179.97438 * 14 13 12 16 16 C 1.48366 * 126.40786 * 180.02562 * 15 14 13 17 17 O 1.21399 * 120.00418 * 359.97438 * 16 15 14 18 18 O 1.34639 * 119.99781 * 179.97438 * 16 15 14 19 19 N 1.30690 * 107.18043 * 0.02562 * 15 14 13 20 20 O 1.21293 * 110.10281 * 359.97438 * 19 15 14 21 21 H 1.09005 * 109.46925 * 183.95306 * 1 2 3 22 22 H 1.09005 * 109.46794 * 303.94692 * 1 2 3 23 23 H 1.08998 * 109.47401 * 63.94944 * 1 2 3 24 24 H 1.09000 * 109.47341 * 186.04767 * 3 2 1 25 25 H 1.09002 * 109.47281 * 306.04993 * 3 2 1 26 26 H 0.97003 * 120.00470 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.47104 * 173.94961 * 12 2 1 28 28 H 1.09007 * 109.47257 * 53.95296 * 12 2 1 29 29 H 0.96700 * 117.00305 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3494 1.5285 7 7 2.7117 4.0020 0.6150 8 14 1.5830 4.1868 3.1384 9 1 0.8159 3.2440 3.9916 10 1 2.8249 4.5943 3.8432 11 1 0.7550 5.3876 2.8599 12 6 1.9954 -0.7659 -1.1376 13 6 1.6369 -2.2203 -0.9729 14 7 0.5534 -2.8090 -1.4131 15 6 0.6640 -4.1029 -1.0353 16 6 -0.3168 -5.1843 -1.2996 17 8 -1.3377 -4.9421 -1.9102 18 8 -0.0746 -6.4344 -0.8621 19 7 1.7965 -4.2224 -0.3940 20 8 2.3656 -3.1522 -0.3501 21 1 -0.3633 -1.0253 0.0709 22 1 -0.3633 0.5739 0.8526 23 1 -0.3634 0.4513 -0.9232 24 1 3.0797 1.3445 -0.1083 25 1 1.5610 1.9274 -0.8309 26 1 2.9863 4.9181 0.7770 27 1 3.0797 -0.6610 -1.1756 28 1 1.5611 -0.3871 -2.0628 29 1 -0.7426 -7.1054 -1.0585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314312580.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:30 Heat of formation + Delta-G solvation = -3.961959 kcal Electronic energy + Delta-G solvation = -16712.529995 eV Core-core repulsion = 13640.044833 eV Total energy + Delta-G solvation = -3072.485162 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.80407 -40.43520 -37.18701 -36.61805 -35.68230 -33.20259 -32.26103 -28.24871 -27.17068 -26.50516 -24.52681 -23.16807 -21.82670 -20.64681 -18.42827 -18.34140 -18.04461 -16.74993 -16.50167 -15.96305 -15.11114 -14.82140 -14.51323 -14.09973 -13.94656 -13.01357 -12.53964 -12.22276 -12.06544 -11.84780 -11.75447 -11.41269 -11.31920 -11.23808 -10.98373 -10.81023 -10.60854 -10.29155 -9.99451 -9.37157 -8.54033 -7.61814 -6.12842 -4.14556 0.55426 1.39848 1.97238 2.56813 2.67972 3.26966 3.34983 3.39611 3.66663 4.10121 4.35858 4.80929 4.91490 5.23374 5.25823 5.43143 5.67798 5.73703 5.89707 6.00870 6.20417 6.64611 7.01600 7.11628 7.32425 7.60062 7.79581 7.88387 7.96665 8.31560 8.92110 9.50234 10.97977 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.049862 B = 0.004564 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.419748 B = 6133.896493 C = 6238.531135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.535 5.535 3 C 0.194 3.806 4 C -0.510 4.510 5 H 0.066 0.934 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.134 3.866 13 C 0.227 3.773 14 N -0.443 5.443 15 C 0.136 3.864 16 C 0.587 3.413 17 O -0.472 6.472 18 O -0.495 6.495 19 N -0.327 5.327 20 O 0.114 5.886 21 H 0.046 0.954 22 H 0.082 0.918 23 H 0.023 0.977 24 H 0.038 0.962 25 H 0.000 1.000 26 H 0.262 0.738 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.199 -14.850 -4.086 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.262 5.262 3 C 0.070 3.930 4 C -0.549 4.549 5 H 0.084 0.916 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.211 1.211 12 C 0.004 3.996 13 C 0.006 3.994 14 N -0.178 5.178 15 C -0.135 4.135 16 C 0.425 3.575 17 O -0.354 6.354 18 O -0.306 6.306 19 N -0.030 5.030 20 O 0.042 5.958 21 H 0.064 0.936 22 H 0.100 0.900 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.018 0.982 26 H 0.072 0.928 27 H 0.133 0.867 28 H 0.100 0.900 29 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -2.185 -15.416 -3.688 16.000 hybrid contribution -0.850 0.608 0.012 1.045 sum -3.034 -14.808 -3.676 15.556 Atomic orbital electron populations 1.22340 0.87609 1.00199 1.01530 1.62227 1.08208 1.18737 1.37028 1.19840 0.95795 0.79829 0.97522 1.21122 1.35287 0.96968 1.01519 0.91626 1.24965 0.95132 0.97248 0.97105 1.69947 1.38083 1.11535 1.34009 0.86411 0.78209 0.79306 0.83330 1.19638 1.20921 1.21064 1.20782 1.03043 0.79444 0.96342 1.29290 0.84755 0.96889 0.88421 1.72087 1.20737 1.02064 1.22937 1.23932 0.94406 0.92368 1.02801 1.18355 0.82517 0.80817 0.75840 1.90967 1.25344 1.82647 1.36483 1.84541 1.53291 1.18619 1.74149 1.75058 1.08039 1.03907 1.16042 1.85373 1.42090 1.12861 1.55512 0.93563 0.89982 0.95861 0.94409 0.98173 0.92800 0.86694 0.90025 0.71454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.18 60.07 0.55 1.15 15 2 N -0.54 -10.51 4.74 -245.82 -1.17 -11.67 15 3 C 0.19 4.57 4.72 -4.97 -0.02 4.55 15 4 C -0.51 -13.48 8.46 -34.44 -0.29 -13.77 15 5 H 0.07 1.74 7.12 -52.49 -0.37 1.36 15 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 15 7 N -0.90 -25.25 13.29 55.43 0.74 -24.52 15 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 15 9 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 12 C 0.13 2.06 5.59 -4.98 -0.03 2.03 15 13 C 0.23 3.47 7.11 -13.00 -0.09 3.38 15 14 N -0.44 -7.25 10.87 -9.94 -0.11 -7.36 15 15 C 0.14 2.08 8.04 -156.18 -1.26 0.83 15 16 C 0.59 7.78 8.37 34.90 0.29 8.08 15 17 O -0.47 -7.25 17.89 -19.19 -0.34 -7.59 15 18 O -0.49 -4.59 13.44 -40.33 -0.54 -5.14 15 19 N -0.33 -4.98 12.20 30.93 0.38 -4.60 15 20 O 0.11 1.70 11.29 17.97 0.20 1.91 15 21 H 0.05 0.83 6.74 -51.93 -0.35 0.48 15 22 H 0.08 1.65 6.76 -51.93 -0.35 1.30 15 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 24 H 0.04 0.92 7.93 -51.93 -0.41 0.51 15 25 H 0.00 0.01 8.12 -51.93 -0.42 -0.41 15 26 H 0.26 7.00 8.31 -40.82 -0.34 6.67 15 27 H 0.12 1.52 7.93 -51.93 -0.41 1.11 15 28 H 0.08 1.17 8.12 -51.93 -0.42 0.75 15 29 H 0.43 1.45 9.11 45.56 0.42 1.87 15 LS Contribution 269.80 15.07 4.07 4.07 Total: -1.00 -31.24 269.80 -4.63 -35.86 By element: Atomic # 1 Polarization: -2.60 SS G_CDS: -1.88 Total: -4.49 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.94 Total: 7.69 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.16 Total: -48.15 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.68 Total: -10.82 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.24 -4.63 -35.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314312580.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.901 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds