Wall clock time and date at job start Mon Mar 30 2020 03:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47077 * 2 1 4 4 C 1.50698 * 109.47327 * 240.00350 * 2 1 3 5 5 H 1.07991 * 120.00305 * 245.56517 * 4 2 1 6 6 C 1.37882 * 119.99731 * 65.55947 * 4 2 1 7 7 N 1.31513 * 120.00218 * 9.10257 * 6 4 2 8 8 Si 1.86800 * 119.99911 * 189.09792 * 6 4 2 9 9 H 1.48503 * 109.47169 * 94.98903 * 8 6 4 10 10 H 1.48495 * 109.47279 * 214.99207 * 8 6 4 11 11 H 1.48502 * 109.47190 * 334.99106 * 8 6 4 12 12 N 1.46900 * 109.47327 * 120.00269 * 2 1 3 13 13 C 1.46905 * 110.99831 * 276.18343 * 12 2 1 14 14 H 1.08995 * 109.47189 * 36.70092 * 13 12 2 15 15 C 1.52998 * 109.46927 * 156.70033 * 13 12 2 16 16 O 1.42903 * 109.47269 * 64.74919 * 15 13 12 17 17 C 1.50700 * 109.46899 * 276.69724 * 13 12 2 18 18 C 1.38426 * 122.53641 * 140.00169 * 17 13 12 19 19 C 1.33384 * 114.92059 * 179.97438 * 18 17 13 20 20 S 1.75882 * 109.59311 * 359.97438 * 19 18 17 21 21 C 1.33383 * 122.53850 * 319.71357 * 17 13 12 22 22 H 1.08994 * 109.47197 * 303.88802 * 1 2 3 23 23 H 1.09001 * 109.47208 * 63.88577 * 1 2 3 24 24 H 1.09002 * 109.47235 * 183.88262 * 1 2 3 25 25 H 0.96996 * 119.99929 * 180.02562 * 7 6 4 26 26 H 1.00899 * 110.99785 * 40.13132 * 12 2 1 27 27 H 1.09001 * 109.47123 * 304.75046 * 15 13 12 28 28 H 1.08997 * 109.47073 * 184.75073 * 15 13 12 29 29 H 0.96694 * 113.99977 * 179.97438 * 16 15 13 30 30 H 1.08003 * 122.54095 * 359.95707 * 18 17 13 31 31 H 1.07997 * 125.20554 * 179.97438 * 19 18 17 32 32 H 1.07994 * 125.20828 * 0.02784 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5771 -1.6378 -1.1340 6 6 1.7964 -0.1761 -2.4795 7 7 1.2945 1.0342 -2.5929 8 14 2.1897 -1.1714 -4.0105 9 1 0.9663 -1.8763 -4.4705 10 1 2.6697 -0.2623 -5.0821 11 1 3.2458 -2.1668 -3.6961 12 7 2.0197 -0.6925 1.1994 13 6 2.0559 0.2155 2.3537 14 1 1.2029 0.8925 2.3103 15 6 1.9943 -0.6005 3.6465 16 8 3.1684 -1.4075 3.7569 17 6 3.3334 1.0144 2.3243 18 6 3.3790 2.3579 2.6546 19 6 4.5885 2.9149 2.5772 20 16 5.7613 1.7093 2.0631 21 6 4.5067 0.4792 1.9836 22 1 -0.3633 0.5730 0.8530 23 1 -0.3634 0.4523 -0.9228 24 1 -0.3634 -1.0253 0.0696 25 1 1.1281 1.4098 -3.4716 26 1 1.4612 -1.5088 1.3989 27 1 1.1129 -1.2416 3.6297 28 1 1.9360 0.0750 4.4999 29 1 3.1973 -1.9526 4.5550 30 1 2.5017 2.9131 2.9521 31 1 4.8133 3.9482 2.7966 32 1 4.6622 -0.5514 1.7007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336648640.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:09 Heat of formation + Delta-G solvation = -12.753951 kcal Electronic energy + Delta-G solvation = -15530.043362 eV Core-core repulsion = 13003.470165 eV Total energy + Delta-G solvation = -2526.573197 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.56742 -36.13546 -35.22876 -32.47128 -30.09517 -28.19103 -26.47055 -25.01078 -23.88514 -21.07497 -20.10049 -18.01726 -17.54451 -16.52438 -16.27649 -15.16540 -14.62548 -14.42961 -14.02128 -13.36131 -12.60329 -12.54156 -12.29929 -12.17918 -11.94911 -11.58264 -11.52754 -11.01322 -10.89494 -10.77621 -10.49706 -10.21833 -10.12642 -9.83171 -9.62478 -8.98339 -8.27426 -8.13861 -7.79827 -7.21410 -5.94637 -3.93475 1.67483 2.25097 2.57455 3.34481 3.35823 3.42831 3.47424 4.49161 4.57504 5.13478 5.30797 5.38282 5.45722 5.62031 5.81496 5.90511 5.99359 6.16957 6.34718 6.59768 6.64294 6.75550 7.01775 7.06381 7.16566 7.44190 7.63782 7.89288 7.95991 8.28241 8.61285 8.67696 9.12882 9.69680 11.14757 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022343 B = 0.008101 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.894131 B = 3455.727129 C = 3981.143823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.210 3.790 3 H 0.043 0.957 4 C -0.492 4.492 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.891 3.109 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.667 5.667 13 C 0.147 3.853 14 H 0.054 0.946 15 C 0.084 3.916 16 O -0.550 6.550 17 C -0.097 4.097 18 C -0.121 4.121 19 C -0.229 4.229 20 S 0.045 5.955 21 C -0.125 4.125 22 H 0.008 0.992 23 H 0.071 0.929 24 H 0.029 0.971 25 H 0.258 0.742 26 H 0.326 0.674 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.366 0.634 30 H 0.130 0.870 31 H 0.154 0.846 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.736 0.189 12.969 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.102 3.898 3 H 0.061 0.939 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.719 3.281 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.198 1.198 12 N -0.298 5.298 13 C 0.033 3.967 14 H 0.071 0.929 15 C 0.005 3.995 16 O -0.353 6.353 17 C -0.108 4.108 18 C -0.153 4.153 19 C -0.364 4.364 20 S 0.306 5.694 21 C -0.260 4.260 22 H 0.027 0.973 23 H 0.090 0.910 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.144 0.856 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.211 0.789 30 H 0.148 0.852 31 H 0.172 0.828 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.060 0.737 11.807 12.867 hybrid contribution -2.593 -0.476 -0.028 2.637 sum 2.467 0.260 11.780 12.038 Atomic orbital electron populations 1.22410 1.01403 0.98356 1.00183 1.19226 0.88720 0.95255 0.86563 0.93917 1.21085 1.34348 1.08000 0.89659 0.92045 1.24930 0.95752 0.94732 0.98929 1.69972 1.45835 1.14160 1.23475 0.86592 0.78392 0.80117 0.82969 1.20969 1.21479 1.19847 1.60722 1.58891 1.07711 1.02467 1.20127 0.93059 0.93134 0.90346 0.92880 1.22307 0.87335 0.92804 0.97047 1.86678 1.42040 1.60151 1.46480 1.18646 0.95783 0.92929 1.03488 1.20064 0.97555 0.94795 1.02901 1.25253 0.96577 1.02726 1.11881 1.84016 1.14210 1.02746 1.68382 1.25361 0.93820 1.02445 1.04401 0.97298 0.90987 0.95230 0.93197 0.85599 0.93950 0.94065 0.78927 0.85217 0.82804 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.03 37.16 0.34 -3.51 16 2 C 0.21 5.26 2.25 -68.86 -0.16 5.11 16 3 H 0.04 1.22 7.53 -51.93 -0.39 0.83 16 4 C -0.49 -13.75 8.76 -34.44 -0.30 -14.05 16 5 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 6 C 0.06 1.62 5.18 -17.82 -0.09 1.53 16 7 N -0.90 -26.21 12.15 55.43 0.67 -25.54 16 8 Si 0.89 21.89 29.55 -169.99 -5.02 16.87 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 12 N -0.67 -14.02 5.52 -102.17 -0.56 -14.58 16 13 C 0.15 2.63 2.56 -68.86 -0.18 2.45 16 14 H 0.05 0.97 7.01 -51.93 -0.36 0.61 16 15 C 0.08 1.17 6.60 37.16 0.25 1.42 16 16 O -0.55 -7.77 12.30 -35.23 -0.43 -8.20 16 17 C -0.10 -1.80 4.28 -106.25 -0.46 -2.26 16 18 C -0.12 -2.05 9.95 -41.21 -0.41 -2.46 16 19 C -0.23 -3.60 11.23 29.04 0.33 -3.28 16 20 S 0.04 0.73 23.34 -107.50 -2.51 -1.78 16 21 C -0.12 -2.36 9.54 29.04 0.28 -2.08 16 22 H 0.01 0.17 7.38 -51.93 -0.38 -0.21 16 23 H 0.07 1.88 6.82 -51.93 -0.35 1.53 16 24 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.33 6.48 8.03 -39.29 -0.32 6.17 16 27 H 0.04 0.53 8.03 -51.93 -0.42 0.12 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.37 3.31 9.12 45.56 0.42 3.72 16 30 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.17 3.41 7.99 -52.49 -0.42 2.99 16 LS Contribution 283.92 15.07 4.28 4.28 Total: -1.00 -30.72 283.92 -7.45 -38.17 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.46 Total: 7.92 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -0.41 Total: -17.13 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.11 Total: -40.12 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.43 Total: -8.20 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.72 -7.45 -38.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648640.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.411 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds