Wall clock time and date at job start Mon Mar 30 2020 03:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46448 * 2 1 4 4 C 1.50693 * 109.47151 * 119.99990 * 2 1 3 5 5 H 1.08001 * 120.00075 * 120.00195 * 4 2 1 6 6 C 1.37881 * 120.00225 * 300.28150 * 4 2 1 7 7 N 1.31519 * 119.99652 * 359.71815 * 6 4 2 8 8 Si 1.86802 * 120.00314 * 179.72611 * 6 4 2 9 9 H 1.48503 * 109.46964 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47032 * 119.99462 * 8 6 4 11 11 H 1.48491 * 109.47056 * 239.99659 * 8 6 4 12 12 N 1.46903 * 109.47300 * 240.00279 * 2 1 3 13 13 C 1.46899 * 110.99844 * 152.53475 * 12 2 1 14 14 H 1.09002 * 109.46759 * 33.99778 * 13 12 2 15 15 C 1.52998 * 109.47431 * 273.99658 * 13 12 2 16 16 O 1.42902 * 109.47116 * 295.72359 * 15 13 12 17 17 C 1.50703 * 109.46700 * 153.99407 * 13 12 2 18 18 C 1.38422 * 122.53990 * 219.73955 * 17 13 12 19 19 C 1.33388 * 114.92079 * 179.76962 * 18 17 13 20 20 S 1.75885 * 109.58983 * 0.47006 * 19 18 17 21 21 C 1.33387 * 122.53795 * 40.03157 * 17 13 12 22 22 H 1.09000 * 109.46923 * 180.63284 * 1 2 3 23 23 H 1.08994 * 109.47734 * 300.63650 * 1 2 3 24 24 H 1.09001 * 109.47514 * 60.64010 * 1 2 3 25 25 H 0.97004 * 119.99752 * 180.02562 * 7 6 4 26 26 H 1.00899 * 110.99761 * 28.58337 * 12 2 1 27 27 H 1.08995 * 109.46833 * 55.72533 * 15 13 12 28 28 H 1.09001 * 109.47072 * 175.72427 * 15 13 12 29 29 H 0.96695 * 113.99960 * 179.97438 * 16 15 13 30 30 H 1.07999 * 122.53858 * 359.97438 * 18 17 13 31 31 H 1.07995 * 125.20336 * 180.20967 * 19 18 17 32 32 H 1.07999 * 125.20402 * 359.97340 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6945 -0.2427 2.4827 7 7 0.9383 0.8266 2.6034 8 14 2.3108 -1.1278 4.0079 9 1 3.1365 -2.2940 3.6037 10 1 3.1330 -0.1970 4.8220 11 1 1.1525 -1.5962 4.8104 12 7 2.0197 -0.6924 -1.1995 13 6 3.3425 -0.1900 -1.5942 14 1 3.9097 0.0789 -0.7031 15 6 3.1749 1.0436 -2.4836 16 8 2.5187 0.6704 -3.6970 17 6 4.0802 -1.2614 -2.3550 18 6 5.4342 -1.4953 -2.1874 19 6 5.9305 -2.4833 -2.9337 20 16 4.6519 -3.1727 -3.9254 21 6 3.4791 -2.0525 -3.2450 22 1 -0.3633 -1.0276 0.0114 23 1 -0.3634 0.5236 0.8841 24 1 -0.3634 0.5038 -0.8956 25 1 0.7010 1.1558 3.4844 26 1 1.3604 -0.6104 -1.9588 27 1 2.5760 1.7895 -1.9612 28 1 4.1550 1.4611 -2.7142 29 1 2.3785 1.4048 -4.3102 30 1 6.0420 -0.9235 -1.5019 31 1 6.9607 -2.8073 -2.9325 32 1 2.4323 -2.0116 -3.5074 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336648642.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:11 Heat of formation + Delta-G solvation = -14.380363 kcal Electronic energy + Delta-G solvation = -15445.189918 eV Core-core repulsion = 12918.546195 eV Total energy + Delta-G solvation = -2526.643723 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.64909 -36.30186 -35.14540 -32.49093 -30.17038 -28.23774 -26.41475 -25.12254 -23.91137 -21.11311 -20.07530 -18.18147 -17.52528 -16.65054 -16.07829 -15.32152 -14.69444 -14.44265 -14.11968 -13.41889 -12.83760 -12.69293 -12.44251 -12.24737 -12.17825 -11.34187 -11.27236 -11.12574 -10.90632 -10.62350 -10.39717 -10.33644 -10.00072 -9.91157 -9.64256 -9.10060 -8.38070 -8.31856 -7.94111 -7.19585 -5.96298 -3.99388 1.49049 2.08063 2.39747 3.21187 3.32161 3.40258 3.46587 4.45722 4.57310 5.14836 5.33436 5.41935 5.52063 5.60276 5.75109 5.85266 5.97793 6.17385 6.31960 6.48897 6.76820 6.83620 6.96221 7.06542 7.08112 7.45399 7.76780 7.83668 7.96330 8.31811 8.40072 8.79087 9.09881 9.66156 11.09994 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.007268 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.123836 B = 3851.548534 C = 4484.103746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.211 3.789 3 H 0.001 0.999 4 C -0.490 4.490 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.673 5.673 13 C 0.154 3.846 14 H 0.100 0.900 15 C 0.051 3.949 16 O -0.565 6.565 17 C -0.081 4.081 18 C -0.120 4.120 19 C -0.225 4.225 20 S 0.045 5.955 21 C -0.156 4.156 22 H 0.034 0.966 23 H 0.088 0.912 24 H 0.005 0.995 25 H 0.258 0.742 26 H 0.326 0.674 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.370 0.630 30 H 0.135 0.865 31 H 0.156 0.844 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -1.130 -11.855 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.529 4.529 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.304 5.304 13 C 0.040 3.960 14 H 0.118 0.882 15 C -0.029 4.029 16 O -0.369 6.369 17 C -0.093 4.093 18 C -0.151 4.151 19 C -0.360 4.360 20 S 0.307 5.693 21 C -0.292 4.292 22 H 0.054 0.946 23 H 0.107 0.893 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.144 0.856 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.216 0.784 30 H 0.153 0.847 31 H 0.174 0.826 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.532 -3.328 -12.124 14.168 hybrid contribution 0.138 2.155 1.406 2.577 sum 6.670 -1.173 -10.717 12.678 Atomic orbital electron populations 1.21948 0.98306 0.99836 1.00055 1.19196 0.91531 0.92007 0.86908 0.98099 1.21269 1.30045 1.12037 0.89549 0.91919 1.24961 0.95444 0.95185 0.99023 1.69896 1.37500 1.23382 1.23142 0.86500 0.78566 0.79731 0.82998 1.19730 1.21265 1.21159 1.60669 1.01823 1.60038 1.07833 1.20233 0.93193 0.88191 0.94394 0.88162 1.22956 0.95596 0.98324 0.86030 1.86481 1.81541 1.38579 1.30298 1.18839 0.92896 0.99443 0.98109 1.20130 0.95118 0.98958 1.00912 1.25324 1.02395 1.03549 1.04732 1.83992 1.01511 1.39299 1.44546 1.25239 1.02470 0.99381 1.02085 0.94639 0.89313 0.97615 0.93203 0.85629 0.93220 0.94151 0.78414 0.84696 0.82618 0.82045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.93 37.16 0.33 -3.14 16 2 C 0.21 5.23 2.39 -68.87 -0.16 5.07 16 3 H 0.00 0.04 7.18 -51.93 -0.37 -0.34 16 4 C -0.49 -13.55 8.63 -34.44 -0.30 -13.85 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.61 11.32 55.43 0.63 -24.98 16 8 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 N -0.67 -14.36 5.60 -102.17 -0.57 -14.94 16 13 C 0.15 2.87 2.53 -68.86 -0.17 2.70 16 14 H 0.10 2.05 7.66 -51.93 -0.40 1.65 16 15 C 0.05 0.80 6.68 37.16 0.25 1.04 16 16 O -0.56 -8.08 11.73 -35.23 -0.41 -8.49 16 17 C -0.08 -1.41 4.73 -106.25 -0.50 -1.91 16 18 C -0.12 -1.87 9.95 -41.21 -0.41 -2.28 16 19 C -0.23 -3.16 11.23 29.04 0.33 -2.83 16 20 S 0.04 0.63 23.34 -107.50 -2.51 -1.88 16 21 C -0.16 -2.60 9.56 29.04 0.28 -2.32 16 22 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.09 2.36 6.08 -51.93 -0.32 2.05 16 24 H 0.00 0.11 8.11 -51.93 -0.42 -0.32 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.33 6.62 7.28 -39.29 -0.29 6.33 16 27 H 0.05 0.82 7.50 -51.93 -0.39 0.43 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.37 3.58 9.12 45.56 0.42 3.99 16 30 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.16 2.71 7.82 -52.49 -0.41 2.30 16 LS Contribution 282.03 15.07 4.25 4.25 Total: -1.00 -29.62 282.03 -7.51 -37.13 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -3.41 Total: 8.40 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -0.46 Total: -16.12 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.06 Total: -39.92 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.41 Total: -8.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.51 Total: -1.88 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.62 -7.51 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648642.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.752 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds