Wall clock time and date at job start Mon Mar 30 2020 03:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46448 * 2 1 4 4 C 1.50693 * 109.47151 * 119.99990 * 2 1 3 5 5 H 1.08001 * 120.00075 * 120.00195 * 4 2 1 6 6 C 1.37881 * 120.00225 * 300.28150 * 4 2 1 7 7 N 1.31519 * 119.99652 * 359.71815 * 6 4 2 8 8 Si 1.86802 * 120.00314 * 179.72611 * 6 4 2 9 9 H 1.48503 * 109.46964 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47032 * 119.99462 * 8 6 4 11 11 H 1.48491 * 109.47056 * 239.99659 * 8 6 4 12 12 N 1.46903 * 109.47300 * 240.00279 * 2 1 3 13 13 C 1.46899 * 110.99844 * 152.53475 * 12 2 1 14 14 H 1.09002 * 109.46759 * 33.99778 * 13 12 2 15 15 C 1.52998 * 109.47431 * 273.99658 * 13 12 2 16 16 O 1.42902 * 109.47116 * 295.72359 * 15 13 12 17 17 C 1.50703 * 109.46700 * 153.99407 * 13 12 2 18 18 C 1.38422 * 122.53990 * 219.73955 * 17 13 12 19 19 C 1.33388 * 114.92079 * 179.76962 * 18 17 13 20 20 S 1.75885 * 109.58983 * 0.47006 * 19 18 17 21 21 C 1.33387 * 122.53795 * 40.03157 * 17 13 12 22 22 H 1.09000 * 109.46923 * 180.63284 * 1 2 3 23 23 H 1.08994 * 109.47734 * 300.63650 * 1 2 3 24 24 H 1.09001 * 109.47514 * 60.64010 * 1 2 3 25 25 H 0.97004 * 119.99752 * 180.02562 * 7 6 4 26 26 H 1.00899 * 110.99761 * 28.58337 * 12 2 1 27 27 H 1.08995 * 109.46833 * 55.72533 * 15 13 12 28 28 H 1.09001 * 109.47072 * 175.72427 * 15 13 12 29 29 H 0.96695 * 113.99960 * 179.97438 * 16 15 13 30 30 H 1.07999 * 122.53858 * 359.97438 * 18 17 13 31 31 H 1.07995 * 125.20336 * 180.20967 * 19 18 17 32 32 H 1.07999 * 125.20402 * 359.97340 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6945 -0.2427 2.4827 7 7 0.9383 0.8266 2.6034 8 14 2.3108 -1.1278 4.0079 9 1 3.1365 -2.2940 3.6037 10 1 3.1330 -0.1970 4.8220 11 1 1.1525 -1.5962 4.8104 12 7 2.0197 -0.6924 -1.1995 13 6 3.3425 -0.1900 -1.5942 14 1 3.9097 0.0789 -0.7031 15 6 3.1749 1.0436 -2.4836 16 8 2.5187 0.6704 -3.6970 17 6 4.0802 -1.2614 -2.3550 18 6 5.4342 -1.4953 -2.1874 19 6 5.9305 -2.4833 -2.9337 20 16 4.6519 -3.1727 -3.9254 21 6 3.4791 -2.0525 -3.2450 22 1 -0.3633 -1.0276 0.0114 23 1 -0.3634 0.5236 0.8841 24 1 -0.3634 0.5038 -0.8956 25 1 0.7010 1.1558 3.4844 26 1 1.3604 -0.6104 -1.9588 27 1 2.5760 1.7895 -1.9612 28 1 4.1550 1.4611 -2.7142 29 1 2.3785 1.4048 -4.3102 30 1 6.0420 -0.9235 -1.5019 31 1 6.9607 -2.8073 -2.9325 32 1 2.4323 -2.0116 -3.5074 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336648642.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:11 Heat of formation + Delta-G solvation = -35.520285 kcal Electronic energy + Delta-G solvation = -15446.106614 eV Core-core repulsion = 12918.546195 eV Total energy + Delta-G solvation = -2527.560419 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.99754 -37.57559 -36.78767 -34.37049 -31.85098 -29.56409 -28.02661 -27.23675 -25.15127 -22.66777 -21.80164 -19.45901 -18.79246 -18.16466 -17.80443 -16.77488 -16.57460 -15.86198 -15.53416 -15.02197 -14.69800 -14.04506 -13.80975 -13.58286 -13.44017 -13.22205 -12.86680 -12.65878 -12.57970 -12.42932 -12.25957 -11.98341 -11.88176 -11.53621 -11.12779 -10.86155 -10.49857 -9.50580 -9.14235 -8.92688 -8.07672 -6.18495 0.29946 0.92963 1.20771 1.39739 1.42428 1.54397 1.95684 2.44346 3.18671 3.35894 3.78362 4.07295 4.22368 4.36656 4.50499 4.58710 4.68650 4.77183 4.90929 4.93968 5.02706 5.10078 5.25932 5.46815 5.60579 5.72515 5.78929 5.88705 6.34587 6.52370 6.90651 6.95972 7.01560 7.51142 8.96693 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.007268 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.123836 B = 3851.548534 C = 4484.103746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.218 3.782 3 H -0.022 1.022 4 C -0.506 4.506 5 H 0.047 0.953 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.675 5.675 13 C 0.150 3.850 14 H 0.075 0.925 15 C 0.064 3.936 16 O -0.572 6.572 17 C -0.095 4.095 18 C -0.144 4.144 19 C -0.214 4.214 20 S 0.085 5.915 21 C -0.177 4.177 22 H 0.030 0.970 23 H 0.064 0.936 24 H 0.029 0.971 25 H 0.261 0.739 26 H 0.332 0.668 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.392 0.608 30 H 0.144 0.856 31 H 0.188 0.812 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.512 -1.911 -12.698 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.110 3.890 3 H -0.005 1.005 4 C -0.545 4.545 5 H 0.065 0.935 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.306 5.306 13 C 0.037 3.963 14 H 0.093 0.907 15 C -0.016 4.016 16 O -0.379 6.379 17 C -0.107 4.107 18 C -0.175 4.175 19 C -0.349 4.349 20 S 0.347 5.653 21 C -0.313 4.313 22 H 0.049 0.951 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.150 0.850 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.241 0.759 30 H 0.161 0.839 31 H 0.205 0.795 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.631 -4.099 -13.000 15.621 hybrid contribution -0.178 2.373 1.575 2.854 sum 7.452 -1.726 -11.425 13.749 Atomic orbital electron populations 1.21778 0.97921 0.99398 1.00029 1.18959 0.91743 0.90643 0.87694 1.00470 1.21452 1.30163 1.11780 0.91105 0.93489 1.25654 0.95602 0.95868 1.01633 1.70003 1.38097 1.24297 1.23826 0.85563 0.78116 0.78644 0.79647 1.19756 1.20498 1.20668 1.60550 1.03037 1.59903 1.07093 1.20173 0.91472 0.90207 0.94466 0.90721 1.22642 0.96544 0.96287 0.86140 1.86428 1.81374 1.40060 1.30051 1.18824 0.93774 0.99533 0.98547 1.20242 0.94633 1.00346 1.02304 1.25749 1.03801 1.02157 1.03178 1.83839 1.00234 1.37686 1.43527 1.25282 1.02936 1.00424 1.02644 0.95060 0.91769 0.95186 0.93030 0.85025 0.94521 0.92117 0.75860 0.83856 0.79522 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.93 71.98 0.64 -5.86 16 2 C 0.22 11.03 2.39 44.17 0.11 11.14 16 3 H -0.02 -1.21 7.18 -2.39 -0.02 -1.23 16 4 C -0.51 -28.50 8.63 25.60 0.22 -28.28 16 5 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.84 16 8 Si 0.95 44.61 29.54 68.60 2.03 46.63 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 N -0.68 -29.15 5.60 -477.16 -2.67 -31.82 16 13 C 0.15 5.66 2.53 44.17 0.11 5.77 16 14 H 0.07 3.16 7.66 -2.39 -0.02 3.14 16 15 C 0.06 1.97 6.68 71.98 0.48 2.45 16 16 O -0.57 -15.60 11.73 -148.98 -1.75 -17.34 16 17 C -0.09 -3.23 4.73 -20.92 -0.10 -3.33 16 18 C -0.14 -4.31 9.95 21.22 0.21 -4.10 16 19 C -0.21 -5.41 11.23 66.72 0.75 -4.66 16 20 S 0.08 2.20 23.34 -56.49 -1.32 0.88 16 21 C -0.18 -5.70 9.56 66.72 0.64 -5.06 16 22 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 3.46 6.08 -2.39 -0.01 3.45 16 24 H 0.03 1.27 8.11 -2.39 -0.02 1.25 16 25 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 26 H 0.33 13.47 7.28 -89.69 -0.65 12.81 16 27 H 0.04 1.22 7.50 -2.39 -0.02 1.20 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.39 6.81 9.12 -74.06 -0.68 6.13 16 30 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 31 H 0.19 3.47 8.06 -2.91 -0.02 3.44 16 32 H 0.15 5.09 7.82 -2.91 -0.02 5.07 16 Total: -1.00 -62.87 282.03 -0.15 -63.03 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.20 Total: 22.36 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 3.51 Total: -30.90 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.43 Total: -84.66 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -1.75 Total: -17.34 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.32 Total: 0.88 kcal Total: -62.87 -0.15 -63.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648642.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.508 kcal (2) G-P(sol) polarization free energy of solvation -62.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds